@kitelev/exocortex-cli 16.31.4 → 16.31.5

package/dist/index.js

@@ -1,5 +1,5 @@
 #!/usr/bin/env node
-// @kitelev/exocortex-cli v16.31.4
+// @kitelev/exocortex-cli v16.31.5
 // CLI tool for Exocortex knowledge management system - SPARQL queries, task management, and more
 // License: MIT
 
@@ -762,7 +762,7 @@ ${r}`}o(NJ,"serializeFile");function IN(n,e,t={}){let r=my.default.dirname(n),i=
 `).map(s=>s.trim()).filter(Boolean)){let s=LJ.exec(i);if(s){r.push({sessionName:i,uuid:s[1],type:"full"});continue}let a=kJ.exec(i);a&&r.push({sessionName:i,uuid:a[1],type:"short"})}return r}o(MJ,"listClaudeChildSessions");function $J(n,e,t){let r=null,i=e.toLowerCase();function s(a){if(r)return;let c;try{c=(0,yy.readdirSync)(a,{withFileTypes:!0})}catch{return}for(let l of c){if(r)return;if(l.name.startsWith(".")||l.name==="node_modules")continue;let u=(0,xN.join)(a,l.name);if(l.isDirectory())s(u);else if(l.name.endsWith(".md")){let f=l.name.slice(0,-3).toLowerCase();(t==="full"&&f===i||t==="short"&&f.startsWith(i))&&(r=u)}}}return o(s,"walk"),s(n),r}o($J,"findVaultFile");function UJ(n,e){try{let i=(e??(s=>(0,yy.readFileSync)(s,"utf8")))(n).match(/ems__Effort_status\s*:.*\[\[([^\]]+)\]\]/);return i?i[1].includes(jJ):!1}catch{return!1}}o(UJ,"isTaskDoing");async function RN(n,e=gy.exec,t){let r=await MJ(e),i=[];for(let s of r){let a=$J(n,s.uuid,s.type);if(!a){i.push({sessionName:s.sessionName,taskUuid:s.uuid,taskFilePath:null,reason:"vault task not found"});continue}UJ(a,t)||i.push({sessionName:s.sessionName,taskUuid:s.uuid,taskFilePath:a,reason:"vault task status != Doing"})}return i}o(RN,"detectOrphans");async function ON(n,e,t=gy.exec,r=IN){let i=CN(t);if(e)return{ok:!0};let s=new Date().toISOString();if(n.taskFilePath)try{r(n.taskFilePath,{ems__Effort_status:"[[ems__EffortStatusFailed]]",aiTask__Task_lastError:`orphan recovery: ${n.reason}`,exo__Asset_updatedAt:s})}catch(a){return{ok:!1,error:`vault update failed: ${a.message}`}}try{await i(`tmux kill-session -t ${JSON.stringify(n.sessionName)}`)}catch{}return{ok:!0}}o(ON,"recoverOrphan");function VJ(){return process.env.EXOCORTEX_VAULT??(0,_y.join)((0,DN.homedir)(),"vault-2025")}o(VJ,"defaultVault");function FN(){return new we("recover").description("Detect and recover orphaned claude-child tmux sessions. A session is orphaned when the corresponding vault task is not in Doing status. Default mode: dry-run (no changes). Use --apply to perform recovery.").option("--vault <path>","Path to Obsidian vault",VJ()).option("--dry-run","List orphans without applying changes (default)",!1).option("--apply","Apply orphan recovery: set Failed + kill tmux session",!1).action(async n=>{let e=(0,_y.resolve)(n.vault);if(!(0,PN.existsSync)(e)){console.error(`[recover] vault not found: ${e}`),process.exitCode=1;return}let t=!n.apply;console.log(`[recover] vault=${e} mode=${t?"dry-run":"apply"}`);let r=await RN(e);if(r.length===0){console.log("[recover] No orphaned claude-child sessions found.");return}console.log(`[recover] Found ${r.length} orphan(s):`);for(let a of r){let c=a.taskFilePath??"(not found in vault)";console.log(`  session=${a.sessionName}  uuid=${a.taskUuid}  reason=${a.reason}`),console.log(`    file=${c}`)}if(t){console.log("[recover] Dry-run mode: no changes applied. Use --apply to recover.");return}let i=0,s=0;for(let a of r){let c=await ON(a,!1);c.ok?(i++,console.log(`[recover] RECOVERED: ${a.sessionName}`)):(s++,console.error(`[recover] ERROR recovering ${a.sessionName}: ${c.error}`))}console.log(`[recover] Done: recovered=${i} errors=${s}`),s>0&&(process.exitCode=1)})}o(FN,"recoverCommand");var JE=require("fs"),by=require("path"),Kn=oe(ir());function BJ(n,e){return e.concat([n])}o(BJ,"collectAlso");var qJ="https://exocortex.my/ontology/find#Alias_sparql",GJ="https://exocortex.my/ontology/exo#Asset_label";function uu(n){if(n&&typeof n=="object"&&"value"in n){let e=n.value;return typeof e=="string"?e:String(e)}return String(n)}o(uu,"nodeValue");async function WJ(n,e){let t=await n.match(void 0,void 0,void 0),r=[];for(let s of t)uu(s.predicate)!==GJ||uu(s.object)!==e||r.push(uu(s.subject));if(r.length===0)return null;let i=[];for(let s of r)for(let a of t)uu(a.predicate)===qJ&&uu(a.subject)===s&&i.push(uu(a.object));if(i.length===0)return null;if(i.length>1)throw new Bt(`Ambiguous find__Alias "${e}" \u2014 ${i.length} instances define a sparql fragment`,`Ensure exactly one find__Alias asset has exo:Asset_label "${e}"`);return i[0]}o(WJ,"resolveAliasFragment");var zJ=/^([a-z][a-zA-Z0-9]*)__([A-Za-z0-9_]+)$/,HJ="https://exocortex.my/ontology/";function QJ(n,e){let t=zJ.exec(e);if(t){let i=`<${HJ}${t[1]}#${t[2]}>`;return n.replace(/\?value\b/g,i)}let r=e.replace(/\\/g,"\\\\").replace(/"/g,'\\"');return n.replace(/\?value\b/g,`"${r}"`)}o(QJ,"bindValueLiteral");function NN(){return new we("find").description("Find vault assets via SPARQL \u2014 outputs file paths one per line (RFC 8e83442b T1.1)").option("--vault <path>","Path to Obsidian vault",process.cwd()).option("--also <path>","Additional vault to include (repeatable)",BJ,[]).option("--sparql <query>","SPARQL SELECT query (must bind ?path)").option("--class <value>","Filter by class label via find__Alias 'class' (e.g. ems__Task)").action(async n=>{se.setFormat("text");try{if(n.sparql&&n.class)throw new Bt("--sparql and --class are mutually exclusive","Pass either a raw --sparql query or a find__Alias-backed flag like --class");if(!n.sparql&&!n.class)throw new Bt("one of --sparql <query> or --class <value> is required",'exocortex find --class ems__Task   OR   exocortex find --sparql "SELECT ?path WHERE { ... }"');let e=(0,by.resolve)(n.vault);if(!(0,JE.existsSync)(e))throw new Re(e);let t=new jt(e),i=await new Kn.NoteToRDFConverter(t).convertVault(),s=n.also||[];for(let v of s){let E=(0,by.resolve)(v);if(!(0,JE.existsSync)(E))throw new Re(E);let I=new jt(E),U=await new Kn.NoteToRDFConverter(I).convertVault();i=i.concat(U)}let a=new Kn.InMemoryTripleStore;await a.addAll(i);let c;if(n.class){let v=await WJ(a,"class");if(v===null)throw new Bt('No find__Alias with exo:Asset_label "class" was found in the vault',"Seed a find__Alias asset (label=class) or fall back to exocortex find --sparql");c=`SELECT ?path WHERE { ${QJ(v,n.class)} }`}else c=n.sparql;let l=ru(c);l=co(l);let u=new Kn.ExoQLParser,f=lo(oo(e));for(let v of s){let E=lo(oo((0,by.resolve)(v)));for(let[I,F]of E)f.has(I)||f.set(I,F)}f.size>0&&u.setVaultPrefixes(f);let d=u.parse(l),p=new Kn.ExoQLAlgebraTranslator().translate(d);p.type!=="construct"&&(p=new Kn.AlgebraOptimizer().optimize(p));let b=await new Kn.ExoQLQueryExecutor(a).executeAll(p),w="obsidian://vault/";for(let v of b){let I=v.toJSON().path;if(typeof I!="string"||!I.startsWith(w))continue;let F=I.slice(w.length),U;try{U=decodeURIComponent(F)}catch{U=F}process.stdout.write(U+`
 `)}}catch(e){se.handle(e),process.exit(5)}})}o(NN,"findCommand");var t2=require("fs"),r2=require("path"),Oe=oe(ir());var UN=oe(ir()),Ft=oe(jN());var MN="obsidian://vault/";function oZ(n){let e=/^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i;return{async resolveTargetPath(t){if(!t)throw new Error("Cannot resolve empty targetIRI to a vault path");let r=t;if(r.startsWith(MN))r=decodeURI(r.slice(MN.length));else if(e.test(r)){let i=await n.findFileByUID(r);if(!i)throw new Error(`No vault file found for UID: ${r}`);r=i}if(r.endsWith(".md")||(r=`${r}.md`),!await n.fileExists(r))throw new Error(`Cannot resolve target file for IRI "${t}" (tried "${r}")`);return r}}}o(oZ,"createCliPathResolver");var cZ=["openFile","sparqlSelect","getActiveFileIRI","getActiveFilePath","trashFile","duplicateFile"],e2=class extends Error{constructor(t){super(`Service "${t}" is not implemented in the CLI (no-op stub). dyncommand exec on this service_call grounding cannot change vault state. See CLI parity issues #2865-#2868 for port status.`);this.serviceId=t;this.name="CliServiceNotImplementedError"}static{o(this,"CliServiceNotImplementedError")}};function $N(n){return{async execute(){throw new e2(n)}}}o($N,"notImplementedService");function lZ(n){return e=>{let t=n.getFirstLinkpathDest(e,"");if(!t||!("basename"in t))return null;let i=n.getFrontmatter(t)?.exo__Asset_label;return typeof i=="string"&&i.length>0?i:null}}o(lZ,"createCliClassResolver");function VN(n,e){for(let t of cZ)n.register(t,$N(t));for(let t of["updateProperty","removeProperty","setStatus","createAsset"])n.register(t,$N(t));if(e){if(e.fsAdapter){let t=new UN.FrontmatterService,r=oZ(e.fsAdapter);n.register("updateProperty",(0,Ft.createUpdatePropertyService)(e.fsAdapter,t,r)),n.register("removeProperty",(0,Ft.createRemovePropertyService)(e.fsAdapter,t,r)),n.register("setStatus",(0,Ft.createSetStatusService)(e.fsAdapter,t,r)),n.register("createAsset",(0,Ft.createCreateAssetService)(e.vaultAdapter,e.fsAdapter,lZ(e.vaultAdapter)))}n.register("createRelatedTask",(0,Ft.createCreateRelatedTaskService)(e.vaultAdapter,e.genericAssetCreationService)),n.register("createRelatedProject",(0,Ft.createCreateRelatedProjectService)(e.vaultAdapter,e.genericAssetCreationService)),n.register("archiveAsset",(0,Ft.createArchiveAssetService)(e.vaultAdapter,e.archiveAssetService)),n.register("planForEvening",(0,Ft.createPlanForEveningService)(e.vaultAdapter,e.taskStatusService)),n.register("cleanProperties",(0,Ft.createCleanPropertiesService)(e.vaultAdapter,e.propertyCleanupService)),n.register("renameToUid",(0,Ft.createRenameToUidService)(e.vaultAdapter,e.renameToUidService)),n.register("repairFolder",(0,Ft.createRepairFolderService)(e.vaultAdapter,e.folderRepairService)),n.register("fixMissingLabel",(0,Ft.createFixMissingLabelService)(e.vaultAdapter,e.fixMissingLabelService))}}o(VN,"populateCliServiceRegistry");var uZ=/^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i;async function fZ(){if(process.stdin.isTTY)return[];let n=[];for await(let t of process.stdin)n.push(t);return Buffer.concat(n).toString("utf-8").split(`
 `).map(t=>t.trim()).filter(t=>t.length>0)}o(fZ,"readStdinLines");function vy(n){if(n&&typeof n=="object"&&"value"in n){let e=n.value;return typeof e=="string"?e:String(e)}return String(n)}o(vy,"nodeValue");async function dZ(n,e){let t=new Oe.IRI("https://exocortex.my/ontology/exocmd#Command_cliName"),r=await n.match(void 0,t,void 0),i=[];for(let s of r)if(vy(s.object)===e){let l=vy(s.subject).match(/([0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12})\.md$/i);l&&i.push(l[1])}if(i.length===0)return null;if(i.length>1)throw new Bt(`Ambiguous cliName "${e}" \u2014 resolves to ${i.length} commands: ${i.join(", ")}`,"Use the UUID directly: exocortex apply <uuid> <path>");return i[0]}o(dZ,"resolveSlugToUuid");async function hZ(n,e){let t=new Oe.IRI("https://exocortex.my/ontology/exocmd#Command_destructive"),r=await n.match(void 0,t,void 0);for(let i of r)if(vy(i.subject).includes(e)){let a=vy(i.object);if(a==="true"||a==="True")return!0}return!1}o(hZ,"isDestructive");async function pZ(n,e,t,r,i,s,a){let c=(0,r2.resolve)(n,r);if(!(0,t2.existsSync)(c))return console.error(`\u274C Target file not found: ${r}`),!1;let u=await new Oe.CommandResolver(e).loadCommand(t);if(!u)return console.error(`\u274C Command with UID "${t}" not found.`),!1;if(await hZ(e,t)&&!i.dryRun&&!i.yes)return console.error(`\u274C Command "${u.name}" is marked destructive. Add --dry-run to preview, or --yes to apply.`),!1;let d=(0,Oe.vaultPathToIRI)(r);if(!await new Oe.PreconditionEvaluator(e,void 0,{clock:s}).evaluate(u.precondition,d))return console.error(`\u274C Precondition not satisfied for "${u.name}" on "${r}".`),!1;if(i.dryRun)return console.log(`\u{1F50D} Dry-run: would apply "${u.name}" to "${r}" (precondition passed).`),!0;let y=new Oe.ServiceRegistry,b=new jt(n),w=new Oe.GenericAssetCreationService(b).withDeterminism({clock:s,uidGenerator:a}),v=new Oe.ArchiveAssetService(b),E=new Oe.PropertyCleanupService(b),I=new Oe.FixMissingLabelService(b),F=new Oe.RenameToUidService(b),U=new Oe.FolderRepairService(b),ee=new Oe.TaskStatusService(b,new Oe.EffortStatusWorkflow,new Oe.StatusTimestampService(b)),V=new yr(n);VN(y,{vaultAdapter:b,fsAdapter:V,genericAssetCreationService:w,archiveAssetService:v,taskStatusService:ee,propertyCleanupService:E,fixMissingLabelService:I,renameToUidService:F,folderRepairService:U});let W=new Oe.GroundingExecutor(V,V,y,(0,Oe.createVaultFrontmatterClassLabelResolver)(V),{clock:s,uidGenerator:a}),D;if(i.input)try{let G=JSON.parse(i.input);if(typeof G!="object"||G===null||Array.isArray(G))throw new Error("must be a JSON object");D=G}catch(G){let Fe=G instanceof Error?G.message:String(G);return console.error(`\u274C --input: invalid JSON object (${Fe})`),!1}let N=await W.execute(u.grounding,d,r,D);if(N.success){let G=u.successMessage??`Applied "${u.name}" to "${r}".`;return console.log(`\u2705 ${G}`),!0}else return console.error(`\u274C "${u.name}" failed on "${r}": ${N.error}`),!1}o(pZ,"executeOnTarget");function BN(){return new we("apply").description("Apply an exocmd__Command to one or more vault assets (RFC 8e83442b T1.2). Pass a path arg or pipe paths via stdin.").argument("<cmd>","Command UUID or cliName slug").argument("[path]","Vault-relative path to target asset (omit to read paths from stdin)").option("--vault <path>","Path to Obsidian vault",process.cwd()).option("--dry-run","Preview without writing").option("--yes","Skip destructive-command confirmation").option("--input <json>","JSON userInput for service_call groundings").option("--seed <uuid>","Deterministic UID seed for test/replay (uses seededUidGenerator)").option("--frozen-clock <iso>","Freeze clock to ISO timestamp for test/replay (uses frozenClock)").action(async(n,e,t)=>{se.setFormat("text");try{let r=(0,r2.resolve)(t.vault);if(!(0,t2.existsSync)(r))throw new Re(r);sy(r);let i=t.frozenClock?(0,Oe.frozenClock)(t.frozenClock):(0,Oe.liveClock)(),s=t.seed?(0,Oe.seededUidGenerator)(t.seed):(0,Oe.liveUidGenerator)(),a=new jt(r),l=await new Oe.NoteToRDFConverter(a).convertVault(),u=new Oe.InMemoryTripleStore;await u.addAll(l);let f;if(uZ.test(n))f=n;else{let y=await dZ(u,n);y||(console.error(`\u274C No command found with UUID or cliName "${n}".`),process.exit(3)),f=y}let d;if(e)d=[e];else if(d=await fZ(),d.length===0)throw new Bt("No target path provided and stdin is empty.","exocortex apply <uuid> <path>  OR  exocortex find ... | exocortex apply <uuid>");let h=0,p=0;for(let y of d)await pZ(r,u,f,y,t,i,s)?h++:p++;d.length>1&&console.log(`
-\u{1F4CA} Applied to ${h}/${d.length} target(s) (${p} failed).`),p>0&&process.exit(5)}catch(r){se.handle(r),process.exit(5)}})}o(BN,"applyCommand");var fo=require("fs"),fu=require("path");var qN=/^---\s*$/,mZ=/^exocmd__Grounding_type:\s*(.+?)\s*$/,gZ=/^"?\[\[[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}(?:\|[^\]]*)?\]\]"?$/i,yZ=new Set(["node_modules"]);function _Z(n){return n.startsWith(".")||yZ.has(n)}o(_Z,"shouldSkipDir");function*GN(n){let e;try{e=(0,fo.readdirSync)(n,{withFileTypes:!0})}catch(t){let r=t;if(r.code==="EPERM"||r.code==="EACCES"||r.code==="ENOENT")return;throw t}for(let t of e){let r=(0,fu.join)(n,t.name);if(t.isDirectory()){if(_Z(t.name))continue;yield*GN(r)}else t.isFile()&&t.name.endsWith(".md")&&(yield r)}}o(GN,"walkMarkdownFiles");function bZ(n){let e=n.split(/\r?\n/);if(e.length<2||!qN.test(e[0]))return null;for(let t=1;t<e.length;t++)if(qN.test(e[t]))return{lines:e.slice(1,t),startLine:2};return null}o(bZ,"extractFrontmatter");function SZ(n){let e=n.trim();return e===""||e==="null"||e==="~"?!1:!gZ.test(e)}o(SZ,"isLiteralForm");function vZ(n){let e=[];for(let t of GN(n)){let r;try{r=(0,fo.readFileSync)(t,"utf-8")}catch{continue}let i=bZ(r);if(i)for(let s=0;s<i.lines.length;s++){let a=i.lines[s].match(mZ);if(!a)continue;let c=a[1];SZ(c)&&e.push({path:(0,fu.relative)(n,t),line:i.startLine+s,value:c})}}return e}o(vZ,"scanVaultForLiteralForm");function WN(){return new we("grounding-type-literal-form").description("Detect post-Phase-4+1 regressions: any exocmd__Grounding_type literal-string form (not wikilink) in vault frontmatter").requiredOption("--vault <path>","Vault root directory").option("--output <type>","Response format: text|json","text").action(n=>{let e=n.output??"text";se.setFormat(e);try{let t=(0,fu.resolve)(n.vault);if(!(0,fo.existsSync)(t)||!(0,fo.statSync)(t).isDirectory())throw new Re(t);let r=vZ(t);if(e==="json")console.log(JSON.stringify({vaultPath:t,violationCount:r.length,violations:r,clean:r.length===0},null,2));else if(r.length===0)console.log(`OK ${t}: 0 exocmd__Grounding_type literal-form violations`);else{console.error(`FAIL ${t}: ${r.length} exocmd__Grounding_type literal-form violation(s):`);for(let i of r)console.error(`  ${i.path}:${i.line} \u2014 value: ${i.value}`);console.error("\nRFC 9d20c91f Phase 3 migrated all values to wikilink form `[[<uid>]]`. Re-run the Phase 3 migration script or hand-edit offending files.")}r.length>0&&(process.exitCode=1)}catch(t){se.handle(t)}})}o(WN,"auditGroundingTypeLiteralFormCommand");function zN(){let n=new we("audit").description("Audit vault for regression patterns (RFC cutover detectors)");return n.addCommand(WN()),n}o(zN,"auditCommand");function HN(n){let e=new we;return e.name("exocortex").description("CLI tool for Exocortex knowledge management system").version(n??"16.31.4"),e.addCommand(NN()),e.addCommand(BN()),e.addCommand(cF()),e.addCommand(dF()),e.addCommand(MF()),e.addCommand(mF()),e.addCommand(gF()),e.addCommand(vF()),e.addCommand(VF()),e.addCommand(JF()),e.addCommand(tN()),e.addCommand(rN()),e.addCommand(iN()),e.addCommand(mN()),e.addCommand(gN()),e.addCommand(EN()),e.addCommand(FN()),e.addCommand(zN()),e}o(HN,"createProgram");HN().parse();0&&(module.exports={createProgram});
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 /*! Bundled license information:
 
 reflect-metadata/Reflect.js:

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@kitelev/exocortex-cli",
-  "version": "16.31.4",
+  "version": "16.31.5",
   "description": "CLI tool for Exocortex knowledge management system - SPARQL queries, task management, and more",
   "main": "dist/index.js",
   "bin": {