npm - @kitelev/exocortex-cli - Versions diffs - 16.248.0 → 16.248.1 - Mend

@kitelev/exocortex-cli 16.248.0 → 16.248.1

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Files changed (2) hide show

package/dist/index.js +3 -3
package/package.json +1 -1

package/dist/index.js CHANGED Viewed

@@ -1,5 +1,5 @@
 #!/usr/bin/env node
-// @kitelev/exocortex-cli v16.248.0
+// @kitelev/exocortex-cli v16.248.1
 // CLI tool for Exocortex knowledge management system - SPARQL queries, task management, and more
 // License: MIT
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uw{static{a(this,"PathScurryPosix")}sep="/";constructor(e=process.cwd(),t={}){let{nocase:n=!1}=t;super(e,qd.posix,"/",{...t,nocase:n}),this.nocase=n}parseRootPath(e){return"/"}newRoot(e){return new lw(this.rootPath,No,void 0,this.roots,this.nocase,this.childrenCache(),{fs:e})}isAbsolute(e){return e.startsWith("/")}},Zm=class extends zd{static{a(this,"PathScurryDarwin")}constructor(e=process.cwd(),t={}){let{nocase:n=!0}=t;super(e,{...t,nocase:n})}},Q3e=process.platform==="win32"?cw:lw,UB=process.platform==="win32"?Wd:process.platform==="darwin"?Zm:zd});var Ame,Ime,Hd,Zx=Ve(()=>{qc();Ame=a(r=>r.length>=1,"isPatternList"),Ime=a(r=>r.length>=1,"isGlobList"),Hd=class r{static{a(this,"Pattern")}#t;#r;#n;length;#e;#i;#a;#p;#u;#c;#f=!0;constructor(e,t,n,i){if(!Ame(e))throw new TypeError("empty pattern list");if(!Ime(t))throw new TypeError("empty glob list");if(t.length!==e.length)throw new TypeError("mismatched pattern list and glob list 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l,u,f=!1;for(;typeof(l=s.pattern())=="string"&&(u=s.rest());)i=i.resolve(l),s=u,f=!0;if(l=s.pattern(),u=s.rest(),f){if(this.hasWalkedCache.hasWalked(i,s))continue;this.hasWalkedCache.storeWalked(i,s)}if(typeof l=="string"){let d=l===".."||l===""||l===".";this.matches.add(i.resolve(l),c,d);continue}else if(l===vr){(!i.isSymbolicLink()||this.follow||s.checkFollowGlobstar())&&this.subwalks.add(i,s);let d=u?.pattern(),p=u?.rest();if(!u||(d===""||d===".")&&!p)this.matches.add(i,c,d===""||d===".");else if(d===".."){let h=i.parent||i;p?this.hasWalkedCache.hasWalked(h,p)||this.subwalks.add(h,p):this.matches.add(h,c,!0)}}else l instanceof RegExp&&this.subwalks.add(i,s)}return this}subwalkTargets(){return this.subwalks.keys()}child(){return new r(this.opts,this.hasWalkedCache)}filterEntries(e,t){let n=this.subwalks.get(e),i=this.child();for(let s of t)for(let o of n){let c=o.isAbsolute(),l=o.pattern(),u=o.rest();l===vr?i.testGlobstar(s,o,u,c):l instanceof 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Set;paused=!1;aborted=!1;#t=[];#r;#n;signal;maxDepth;includeChildMatches;constructor(e,t,n){if(this.patterns=e,this.path=t,this.opts=n,this.#n=!n.posix&&n.platform==="win32"?"\\":"/",this.includeChildMatches=n.includeChildMatches!==!1,(n.ignore||!this.includeChildMatches)&&(this.#r=Cme(n.ignore??[],n),!this.includeChildMatches&&typeof this.#r.add!="function")){let i="cannot ignore child matches, ignore lacks add() method.";throw new Error(i)}this.maxDepth=n.maxDepth||1/0,n.signal&&(this.signal=n.signal,this.signal.addEventListener("abort",()=>{this.#t.length=0}))}#e(e){return this.seen.has(e)||!!this.#r?.ignored?.(e)}#i(e){return!!this.#r?.childrenIgnored?.(e)}pause(){this.paused=!0}resume(){if(this.signal?.aborted)return;this.paused=!1;let e;for(;!this.paused&&(e=this.#t.shift());)e()}onResume(e){this.signal?.aborted||(this.paused?this.#t.push(e):e())}async matchCheck(e,t){if(t&&this.opts.nodir)return;let n;if(this.opts.realpath){if(n=e.realpathCached()||await 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e=="string"&&(e=[e]),this.windowsPathsNoEscape=!!t.windowsPathsNoEscape||t.allowWindowsEscape===!1,this.windowsPathsNoEscape&&(e=e.map(l=>l.replace(/\\/g,"/"))),this.matchBase){if(t.noglobstar)throw new TypeError("base matching requires globstar");e=e.map(l=>l.includes("/")?l:`./**/${l}`)}if(this.pattern=e,this.platform=t.platform||xme,this.opts={...t,platform:this.platform},t.scurry){if(this.scurry=t.scurry,t.nocase!==void 0&&t.nocase!==t.scurry.nocase)throw new Error("nocase option contradicts provided scurry option")}else{let l=t.platform==="win32"?Wd:t.platform==="darwin"?Zm:t.platform?zd:UB;this.scurry=new l(this.cwd,{nocase:t.nocase,fs:t.fs})}this.nocase=this.scurry.nocase;let n=this.platform==="darwin"||this.platform==="win32",i={...t,dot:this.dot,matchBase:this.matchBase,nobrace:this.nobrace,nocase:this.nocase,nocaseMagicOnly:n,nocomment:!0,noext:this.noext,nonegate:!0,optimizationLevel:2,platform:this.platform,windowsPathsNoEscape:this.windowsPathsNoEscape,debug:!!this.opts.debug},s=this.pattern.map(l=>new Yi(l,i)),[o,c]=s.reduce((l,u)=>(l[0].push(...u.set),l[1].push(...u.globParts),l),[[],[]]);this.patterns=o.map((l,u)=>{let f=c[u];if(!f)throw new Error("invalid pattern object");return new Hd(l,f,0,this.platform)})}async walk(){return[...await new tg(this.patterns,this.scurry.cwd,{...this.opts,maxDepth:this.maxDepth!==1/0?this.maxDepth+this.scurry.cwd.depth():1/0,platform:this.platform,nocase:this.nocase,includeChildMatches:this.includeChildMatches}).walk()]}walkSync(){return[...new 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n=/(?<!!)\[\[([^\[\]\n|#^]+)((?:[#^][^\[\]\n|]*)?)(?:\|[^\[\]\n]*)?\]\]/g,i=0;return{updated:r.replace(n,(o,c,l)=>c.trim()!==e?o:(i+=1,`[[${t}${l}]]`)),replacements:i}}var cO,_u,QB=Ve(()=>{"use strict";cO=te(Ba()),_u=te(require("path"));aO();a(XB,"rewriteInboundWikilinks");a(Nme,"rewriteContent");a(kme,"rewriteProseSegment");a(Mme,"replaceWikilinks")});var Nr,fr,hw,jme,er,Mo=Ve(()=>{"use strict";Nr=te(Ba()),fr=te(require("path"));jm();hw=te(Me());QB();jme=/^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i,er=class r{constructor(e){this.rootPath=e;this.uuidIndex=null;this.basenameIndex=null;this.aliasIndex=null}static{a(this,"FileSystemVaultAdapter")}async read(e){let t=this.resolvePath(e.path);if(!await Nr.default.pathExists(t))throw new Error(`File not found: ${e.path}`);return Nr.default.readFile(t,"utf-8")}async create(e,t){let n=this.resolvePath(e);if(await Nr.default.pathExists(n))throw new Error(`File already exists: ${e}`);return await Nr.default.ensureDir(fr.default.dirname(n)),await Nr.default.writeFile(n,t,"utf-8"),this.createFileObject(e)}async modify(e,t){let n=this.resolvePath(e.path);if(!await Nr.default.pathExists(n))throw new Error(`File not found: ${e.path}`);await Nr.default.writeFile(n,t,"utf-8")}async delete(e){let t=this.resolvePath(e.path);if(!await Nr.default.pathExists(t))throw new Error(`File not found: ${e.path}`);await Nr.default.remove(t)}async exists(e){let t=this.resolvePath(e);return Nr.default.pathExists(t)}getAbstractFileByPath(e){let t=this.resolvePath(e);try{let n=Nr.default.statSync(t);if(n.isFile())return this.createFileObject(e);if(n.isDirectory())return this.createFolderObject(e)}catch{return null}return null}getAllFiles(){let e=[];return this.walkDirectory(this.rootPath,t=>{if(t.endsWith(".md")){let n=fr.default.relative(this.rootPath,t);e.push(this.createFileObject(n))}}),e}getFrontmatter(e){try{let t=Nr.default.readFileSync(this.resolvePath(e.path),"utf-8");return this.extractFrontmatter(t)}catch{return null}}async updateFrontmatter(e,t){let n=await this.read(e),i=this.extractFrontmatter(n),s=r.FRONTMATTER_BLOCK.exec(n)?.[1];if(i===null&&s!==void 0&&s.trim()!=="")throw new Error(`updateFrontmatter: frontmatter of ${e.path} is not parseable \u2014 refusing to patch (would drop keys)`);let o=i??{},c=t({...o});hw.FrontmatterService.applyPatch(o,c);let l=this.replaceFrontmatter(n,o);await this.modify(e,l)}async rename(e,t){let n=this.resolvePath(e.path),i=this.resolvePath(t);if(!await Nr.default.pathExists(n))throw new Error(`File not found: ${e.path}`);await Nr.default.ensureDir(fr.default.dirname(i)),await Nr.default.move(n,i)}async createFolder(e){let t=this.resolvePath(e);await Nr.default.ensureDir(t)}getFirstLinkpathDest(e,t,n){let i=e.split("|")[0].trim();if(!i)return null;if(jme.test(i)){this.uuidIndex===null&&this.buildUuidIndex();let u=i.toLowerCase(),f=this.uuidIndex.get(u);return f?this.createFileObject(f):null}let s=fr.default.dirname(this.resolvePath(t)),o;if(fr.default.isAbsolute(i)?o=this.resolvePath(i):o=fr.default.resolve(s,i),i.endsWith(".md")||(o+=".md"),Nr.default.existsSync(o)){let u=fr.default.relative(this.rootPath,o);return this.createFileObject(u)}(this.basenameIndex===null||this.aliasIndex===null)&&this.buildLinkpathIndex();let c=i.toLowerCase(),l=this.basenameIndex.get(c);if(l)return this.createFileObject(l);if(n?.allowAliasFallback!==!1){let u=this.aliasIndex.get(c);if(u)return this.createFileObject(u)}return null}buildLinkpathIndex(){this.basenameIndex=new Map,this.aliasIndex=new Map,this.walkDirectory(this.rootPath,e=>{if(!e.endsWith(".md"))return;let t=fr.default.relative(this.rootPath,e),n=fr.default.basename(e,".md").toLowerCase();this.basenameIndex.has(n)||this.basenameIndex.set(n,t);let i;try{i=Nr.default.readFileSync(e,"utf-8")}catch{return}let s=this.extractFrontmatter(i);if(!s)return;let o=s.aliases,c=Array.isArray(o)?o:typeof o=="string"?[o]:[];for(let l of c){if(typeof l!="string")continue;let u=l.trim().toLowerCase();u&&(this.aliasIndex.has(u)||this.aliasIndex.set(u,t))}})}buildUuidIndex(){this.uuidIndex=new Map,this.walkDirectory(this.rootPath,e=>{if(e.endsWith(".md")){let n=fr.default.basename(e,".md").match(/^([0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12})/i);if(n){let i=n[1].toLowerCase(),s=fr.default.relative(this.rootPath,e);this.uuidIndex.set(i,s)}}})}async process(e,t){let n=await this.read(e),i=t(n);return await this.modify(e,i),i}getDefaultNewFileParent(){return{path:"",name:""}}async updateLinks(e,t,n){let i=fr.default.basename(t,".md");await XB(this.rootPath,n,i,{excludeRelPath:e})}resolvePath(e){if(fr.default.isAbsolute(e))return e;let t=this.rootPath.replace(/[/\\]+$/,""),n=fr.default.sep+e;return n===t||n.startsWith(t+fr.default.sep)?n:fr.default.join(this.rootPath,e)}createFileObject(e){let t=fr.default.basename(e),n=fr.default.basename(e,fr.default.extname(e)),i=fr.default.dirname(e);return{path:e,basename:n,name:t,parent:i!=="."?this.createFolderObject(i):null}}createFolderObject(e){return{path:e,name:fr.default.basename(e)}}static{this.FRONTMATTER_BLOCK=/^---\n([\s\S]*?)\n---/}extractFrontmatter(e){let t=e.match(r.FRONTMATTER_BLOCK);return t?(0,hw.parseYamlFrontmatterTolerant)(t[1]):null}replaceFrontmatter(e,t){let i=`---
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Qi,lO=Ve(()=>{"use strict";Qi=te(Me());a(za,"serializeNode");a(ng,"deserializeNode")});function JB(r){let e=za(r.subject),t=za(r.predicate),n=za(r.object);return`${e.type}:${e.value}|${t.type}:${t.value}|${n.type}:${n.value}|${n.datatype??""}|${n.language??""}`}async function ig(r){let e=new jo.InMemoryTripleStore;await e.addAll(r);let n=await new jo.RDFSInferenceEngine().materialize(e),i=new jo.NonInheritablePropertyRegistry;await i.initialize(e);let s=new jo.PropertyCardinalityRegistry;await s.initialize(e);let o=new jo.PrototypeChainMaterializer(i,s);if(n+=await o.materialize(e),n<=0)return{inferred:[],inferredCount:0};let c=new Set;for(let f of r)c.add(JB(f));let l=await e.match(),u=[];for(let f of l)c.has(JB(f))||u.push(f);return{inferred:u,inferredCount:n}}var jo,uO=Ve(()=>{"use strict";jo=te(Me());lO();a(JB,"tripleKey");a(ig,"materializeInferredTriples")});var f6={};Vu(f6,{CACHE_FORMAT_VERSION:()=>mO,CacheManager:()=>Su,DELTA_REBUILD_RATIO:()=>gO,STALE_TMP_MAX_AGE_MS:()=>s6,deserializeNode:()=>ng,diffManifest:()=>mw,inferenceInputsChanged:()=>u6,isSafeRelativePath:()=>l6,serializeNode:()=>za});function fO(r){return r.added.length===0&&r.modified.length===0&&r.removed.length===0}function mw(r,e){let t=[],n=[],i=[],s=new Map;for(let o of r)s.set(o.path,{mtimeMs:o.mtimeMs,size:o.size});for(let[o,c]of e){let l=s.get(o);l===void 0?t.push(o):(l.mtimeMs!==c.mtimeMs||l.size!==c.size)&&n.push(o)}for(let o of s.keys())e.has(o)||i.push(o);return{added:t,modified:n,removed:i}}function dO(r){return typeof r.basename=="string"}function ZB(r){return Xd.test(mi.default.basename(r,mi.default.extname(r)))}function pO(r){if(r.tboxLabel)return!0;let e=(0,ln.vaultPathToIRI)(r.path);for(let t of r.triples)if(t.subject.type==="IRI"&&t.subject.value===e&&t.predicate.type==="IRI"&&t.predicate.value.endsWith(o6)&&(t.object.type==="IRI"||t.object.type==="Literal"&&Xd.test(t.object.value)))return!0;return!1}function Ume(r,e,t){for(let n of r.triples)if(n.object.type==="IRI"){if(e.has(n.object.value))return!0}else if(n.object.type==="Literal"&&t.size>0&&t.has(Bme(n.object.value)))return!0;return!1}function Bme(r){let e=r.trim();e.startsWith("[[")&&e.endsWith("]]")&&(e=e.slice(2,-2));let t=e.indexOf("|");return t>=0&&(e=e.slice(0,t)),e=e.trim().toLowerCase(),e.endsWith(".md")?e.slice(0,-3):e}function e6(r){let e=(0,ln.vaultPathToIRI)(r.path),t=new Set;for(let n of r.triples)n.subject.type==="IRI"&&n.subject.value===e&&n.predicate.type==="IRI"&&n.predicate.value.endsWith(bO)&&n.object.type==="Literal"&&t.add(n.object.value.trim().toLowerCase());return t}function Vme(r){let e=new Set;for(let t of c6(r))e.add(t.toLowerCase());return e}function c6(r){let e=r?.aliases,t=Array.isArray(e)?e:e==null?[]:[e],n=[];for(let i of t)typeof i=="string"&&i.trim()!==""&&n.push(i.trim());return n}function Gme(r){return c6(r).some(e=>Xd.test(e))}function qme(r){let e=(0,ln.vaultPathToIRI)(r.path);for(let t of r.triples)if(t.subject.type==="IRI"&&t.subject.value===e&&t.predicate.type==="IRI"&&t.predicate.value.endsWith(bO)&&(t.object.type==="IRI"||t.object.type==="Literal"&&Xd.test(t.object.value.trim())))return!0;return!1}function Wme(r,e){if(r.size!==e.size)return!1;for(let t of r)if(!e.has(t))return!1;return!0}function hO(r,e){if(r.length!==e.length)return!1;for(let t=0;t<r.length;t++)if(r[t]!==e[t])return!1;return!0}function yO(r,e){return r.newLabel?`TBox-form asset changed: ${e}`:r.hadLabel?`asset lost its TBox-form label: ${e}`:`TBox-form alias: ${e}`}function t6(r,e){let t=(0,ln.vaultPathToIRI)(r),n=[],i=[],s=[];for(let o of e){if(o.subject.type!=="IRI"||o.subject.value!==t||o.predicate.type!=="IRI")continue;let c=o.predicate.value;c.endsWith(o6)?o.object.type==="IRI"&&n.push(o.object.value):c.endsWith(bO)?o.object.type==="IRI"&&i.push(o.object.value):c.endsWith(a6)&&s.push(`${o.object.type}:${o.object.value}|${o.object.datatype??""}|${o.object.language??""}`)}return i.sort(),{label:n,tboxAliases:i,instanceClass:s}}function zme(r,e,t,n){let i=t6(r,e),s=t6(r,t);return hO(i.label,s.label)?hO(i.tboxAliases,s.tboxAliases)?hO(i.instanceClass,s.instanceClass)?null:`TBox-form asset class changed: ${r}`:`TBox-form alias: ${r}`:yO(n,r)}function Hme(r){if((0,ln.frontmatterDeclaresFileSpace)(r))return!0;let e=r.exo__Instance_class;return(Array.isArray(e)?e:[e]).some(n=>typeof n=="string"&&/\bexo__FileSpace\b/.test(n))}function l6(r){return r.length===0||mi.default.isAbsolute(r)||/^[a-zA-Z]:/.test(r)||/^[\\/]/.test(r)?!1:!r.split(/[\\/]/).some(e=>e==="..")}function r6(r){return r.predicate.type==="IRI"&&$me.some(e=>r.predicate.value.endsWith(e))}function n6(r){return!!r&&r.triples.some(e=>e.predicate.type==="IRI"&&e.predicate.value.endsWith(_O))}function u6(r,e,t){let n=new Map;for(let s of r.files)n.set(s.path,s);let i=new Set;for(let s of r.files)for(let o of s.triples)o.object.type==="IRI"&&o.predicate.type==="IRI"&&o.predicate.value.endsWith(_O)&&i.add(o.object.value);for(let s of t){let o=n.get(s),c=e.get(s);if(n6(o)||n6(c)||i.has((0,ln.vaultPathToIRI)(s)))return!0;let l=a(d=>`${d.subject.type}:${d.subject.value}|${d.predicate.value}|${d.object.type}:${d.object.value}`,"key"),u=(o?.triples??[]).filter(r6).map(l).sort(),f=(c?.triples??[]).filter(r6).map(l).sort();if(u.length!==f.length)return!0;for(let d=0;d<u.length;d++)if(u[d]!==f[d])return!0}return!1}var mi,i6,Wr,ln,mO,gO,s6,Xd,o6,bO,_O,a6,$me,Su,gw=Ve(()=>{"use strict";mi=te(require("path")),i6=te(require("crypto")),Wr=te(Ba()),ln=te(Me());Mo();lO();uO();mO=3,gO=.5,s6=600*1e3,Xd=/^[a-z][a-zA-Z0-9]*__\S+$/,o6="#Asset_label",bO="#Asset_aliases",_O="#Asset_prototype",a6="#Instance_class",$me=[a6,"#Class_superClass","#type",_O],Su=class r{constructor(e){this.cliVersion="1.0.0";this.loaded=null;this.loadedStamp=null;this.vaultPath=mi.default.resolve(e),this.cachePath=mi.default.join(this.vaultPath,".exocortex","cache","triples.json")}static{a(this,"CacheManager")}getCachePath(){return this.cachePath}async isCacheValid(){let e=await this.computeManifestDiff();return e!==null&&fO(e)}async computeManifestDiff(){let e=await this.readCacheData();if(!e)return null;let t=this.computeFileManifest();return t?mw(e.files,t):null}async loadOrBuild(){let e=Date.now(),t=await this.readCacheData();if(!t)return this.rebuild(e,"cache absent, corrupt or legacy format",null);let n=this.computeFileManifest();if(!n)return this.rebuild(e,"vault could not be walked",t);let i=mw(t.files,n);if(fO(i))return{triples:this.materializeTriples(t),explicitCount:r.explicitCountOf(t),zeroTriplePaths:r.zeroTriplePathsOf(t),cacheHit:!0,durationMs:Date.now()-e,mode:"hit",reparsedFiles:0};let s=new er(this.vaultPath),o=await this.planDelta(t,n,i,s);if(o.rebuildReason)return this.rebuild(e,o.rebuildReason,t);let c=await this.applyDelta(t,n,i,o.reparse,s);return{triples:c.triples,explicitCount:r.explicitCountOf(c.data),zeroTriplePaths:r.zeroTriplePathsOf(c.data),cacheHit:!0,durationMs:Date.now()-e,mode:"delta",reparsedFiles:o.reparse.length,inferredRecomputed:c.inferredRecomputed}}static explicitCountOf(e){let t=0;for(let n of e.files)t+=n.triples.length;return t}static zeroTriplePathsOf(e){let t=[];for(let n of e.files)n.triples.length===0&&t.push(n.path);return t}async refreshAfterWrite(){let e=await this.loadedIsCurrent()?this.loaded:await this.readCacheData();if(!e)return{mode:"skipped",reparsedFiles:0,reason:"no cache to refresh"};let t=new er(this.vaultPath),n=this.computeFileManifest(t);if(!n)return{mode:"skipped",reparsedFiles:0,reason:"vault could not be walked"};let i=mw(e.files,n);if(fO(i))return{mode:"noop",reparsedFiles:0};let s=await this.planDelta(e,n,i,t);return s.rebuildReason?{mode:"skipped",reparsedFiles:0,reason:`rebuild needed (${s.rebuildReason}) \u2014 left to the next reader`}:(await this.applyDelta(e,n,i,s.reparse,t,{needTriples:!1}),{mode:"delta",reparsedFiles:s.reparse.length})}async rebuild(e,t,n){let i=await this.buildInternal({strict:!1,materializeInference:n?.metadata.inferenceEnabled===!0});return{triples:i.triples.concat(i.inferred),explicitCount:i.triples.length,zeroTriplePaths:r.zeroTriplePathsOf(i.data),cacheHit:!1,durationMs:Date.now()-e,mode:"rebuild",reparsedFiles:i.data.files.length,rebuildReason:t}}materializeTriples(e){let t=[];for(let n of e.files)for(let i of n.triples)t.push(this.deserializeTriple(i));for(let n of e.inferred)t.push(this.deserializeTriple(n));return t}async readCacheData(){try{if(!await Wr.default.pathExists(this.cachePath))return null;let e=await this.statCache(),t=await Wr.default.readJson(this.cachePath);if(!t.metadata||t.metadata.formatVersion!==mO||typeof t.metadata.tripleCount!="number"||!Array.isArray(t.files)||!Array.isArray(t.inferred))return null;for(let i of t.files)if(typeof i?.path!="string"||!l6(i.path)||typeof i.mtimeMs!="number"||typeof i.size!="number"||!Array.isArray(i.triples))return null;let n={metadata:{...t.metadata,fileSpacePrefixes:Array.isArray(t.metadata.fileSpacePrefixes)?t.metadata.fileSpacePrefixes:[],fileSpaceDeclarations:Array.isArray(t.metadata.fileSpaceDeclarations)?t.metadata.fileSpaceDeclarations:[],inferenceEnabled:typeof t.metadata.inferenceEnabled=="boolean"?t.metadata.inferenceEnabled:t.inferred.length>0},files:t.files,inferred:t.inferred};return this.loaded=n,this.loadedStamp=e,n}catch{return null}}async statCache(){try{let e=await Wr.default.stat(this.cachePath);return{mtimeMs:e.mtimeMs,size:e.size}}catch{return null}}async loadedIsCurrent(){if(!this.loaded||!this.loadedStamp)return!1;let e=await this.statCache();return e!==null&&e.mtimeMs===this.loadedStamp.mtimeMs&&e.size===this.loadedStamp.size}computeFileManifest(e){try{let t=e??new er(this.vaultPath),n=new Map;for(let i of t.getAllFiles())try{let s=Wr.default.statSync(mi.default.join(this.vaultPath,i.path));n.set(i.path,{mtimeMs:s.mtimeMs,size:s.size})}catch{}return n}catch{return null}}async planDelta(e,t,n,i){let s=n.added.length+n.modified.length+n.removed.length,o=Math.max(e.files.length,t.size,1);if(s>o*gO)return{reparse:[],rebuildReason:`${s} of ${o} files changed (> ${gO*100}%)`};let c=new Map;for(let m of e.files)c.set(m.path,m);let l=new Set(e.metadata.fileSpaceDeclarations),u=new Set,f=new Set;for(let m of n.removed){if(l.has(m))return{reparse:[],rebuildReason:`FileSpace declaration removed: ${m}`};if(ZB(m))return{reparse:[],rebuildReason:`TBox-form file removed: ${m}`};let b=c.get(m);if(b&&pO(b))return{reparse:[],rebuildReason:`TBox-form asset removed: ${m}`};u.add((0,ln.vaultPathToIRI)(m))}let d=new Map;for(let m of[...n.added,...n.modified]){if(l.has(m))return{reparse:[],rebuildReason:`FileSpace declaration changed: ${m}`};if(ZB(m))return{reparse:[],rebuildReason:`TBox-form file changed: ${m}`};let b=i.getAbstractFileByPath(m),_=b&&dO(b)?b:null,w=_?i.getFrontmatter(_):null;if(w&&Hme(w))return{reparse:[],rebuildReason:`FileSpace declaration changed: ${m}`};d.set(m,{file:_,frontmatter:w})}let p=null;for(let[m,{file:b,frontmatter:_}]of d){let w=c.get(m),I=_?.exo__Asset_label,E={newLabel:typeof I=="string"&&Xd.test(I),hadLabel:w!==void 0&&pO(w),newAlias:Gme(_),hadAlias:w!==void 0&&qme(w)},S;if(E.newLabel||E.hadLabel||E.newAlias||E.hadAlias){if(!w||w.triples.length===0||!b)return{reparse:[],rebuildReason:yO(E,m)};p??=new ln.NoteToRDFConverter(i);let O;try{O=(await p.convertNote(b)).map(this.serializeTriple)}catch{return{reparse:[],rebuildReason:yO(E,m)}}let x=zme(m,w.triples,O,E);if(x)return{reparse:[],rebuildReason:x};S=e6({path:m,mtimeMs:0,size:0,triples:O})}else S=Vme(_);let R=w?e6(w):new Set;if(w&&!Wme(R,S)){let O=!1;for(let x of R)S.has(x)||(f.add(x),O=!0);for(let x of S)R.has(x)||f.add(x);O&&u.add((0,ln.vaultPathToIRI)(m))}if(!w)for(let O of S)f.add(O)}for(let m of n.added){let b=mi.default.basename(m);u.add((0,ln.vaultPathToIRI)(b)),f.add(mi.default.basename(m,mi.default.extname(m)).toLowerCase())}let h=new Set([...n.added,...n.modified]),g=new Set(n.removed);if(u.size>0||f.size>0)for(let m of e.files)h.has(m.path)||g.has(m.path)||Ume(m,u,f)&&h.add(m.path);return{reparse:[...h]}}async applyDelta(e,t,n,i,s,o={needTriples:!0}){let c=[];for(let R of i){let O=s.getAbstractFileByPath(R);O&&dO(O)&&c.push(O)}let l=new Map;await new ln.NoteToRDFConverter(s).convertVaultWithValidation({strict:!1,files:c,fileSpacePrefixes:e.metadata.fileSpacePrefixes,onFileTriples:a((R,O)=>{l.set(R.path,O)},"onFileTriples")});let f=new Set(i),d=new Set(n.removed),p=a(R=>this.makeEntry(R,t,l.get(R)??[],s),"makeEntry"),h=[];for(let R of e.files)d.has(R.path)||h.push(f.has(R.path)?p(R.path):R);let g=new Set(h.map(R=>R.path));for(let R of t.keys())g.has(R)||h.push(p(R));let m=null,b=a(()=>{if(m===null){m=[];for(let R of h)for(let O of R.triples)m.push(this.deserializeTriple(O))}return m},"explicitTriples"),_=[],w=[],I=!1;if(e.metadata.inferenceEnabled){let R=new Map;for(let O of h)R.set(O.path,O);u6(e,R,[...f,...d])?(w=(await ig(b())).inferred,_=w.map(this.serializeTriple),I=!0):(_=e.inferred,o.needTriples&&(w=e.inferred.map(this.deserializeTriple)))}let E=this.assembleCacheData(h,_,{fileSpacePrefixes:e.metadata.fileSpacePrefixes,fileSpaceDeclarations:e.metadata.fileSpaceDeclarations,inferenceEnabled:e.metadata.inferenceEnabled});await this.writeCacheData(E);let S=o.needTriples?b().concat(w):[];return{data:E,triples:S,inferredRecomputed:I}}makeEntry(e,t,n,i){let s=t.get(e),o={path:e,mtimeMs:s?.mtimeMs??0,size:s?.size??0,triples:n.map(this.serializeTriple)},c=pO(o);if(!c&&n.length===0){let l=i.getAbstractFileByPath(e),f=(l&&dO(l)?i.getFrontmatter(l):null)?.exo__Asset_label;c=typeof f=="string"&&Xd.test(f)}return c&&(o.tboxLabel=!0),o}async buildCache(){let e=await this.buildCacheWithValidation({strict:!1});return{tripleCount:e.tripleCount,durationMs:e.durationMs}}async buildCacheWithValidation(e={}){return(await this.buildInternal(e)).result}async buildInternal(e){let t=Date.now(),n=new er(this.vaultPath),i=n.getAllFiles(),s=new Map;for(let h of i)try{let g=Wr.default.statSync(mi.default.join(this.vaultPath,h.path));s.set(h.path,{mtimeMs:g.mtimeMs,size:g.size})}catch{}let o=new Map,l=await new ln.NoteToRDFConverter(n).convertVaultWithValidation({strict:e.strict??!1,files:i,onFileTriples:a((h,g)=>{o.set(h.path,g)},"onFileTriples")}),u=[];for(let h of i)s.has(h.path)&&u.push(this.makeEntry(h.path,s,o.get(h.path)??[],n));let f=[];for(let h of i){if(!s.has(h.path))continue;let g=o.get(h.path);g&&f.push(...g)}let d=[];e.materializeInference&&(d=(await ig(f)).inferred);let p=this.assembleCacheData(u,d.map(this.serializeTriple),{fileSpacePrefixes:l.fileSpaces?.prefixes??[],fileSpaceDeclarations:l.fileSpaces?.declarationPaths??[],inferenceEnabled:e.materializeInference===!0});return await this.writeCacheData(p),{result:{tripleCount:l.triples.length,durationMs:Date.now()-t,skippedFiles:l.skippedFiles,summary:l.summary},data:p,triples:f,inferred:d}}async validateVault(){let e=new er(this.vaultPath);return new ln.NoteToRDFConverter(e).validateVault()}async invalidate(){await Wr.default.pathExists(this.cachePath)&&await Wr.default.remove(this.cachePath),await this.removeStaleTempFiles()}async removeStaleTempFiles(){let e=mi.default.dirname(this.cachePath),t=`${mi.default.basename(this.cachePath)}.`,n;try{n=await Wr.default.readdir(e)}catch{return}let i=Date.now()-s6;for(let s of n){if(!s.startsWith(t)||!s.endsWith(".tmp"))continue;let o=mi.default.join(e,s);try{(await Wr.default.stat(o)).mtimeMs<i&&await Wr.default.remove(o)}catch{}}}async getCacheStats(){try{if(!await Wr.default.pathExists(this.cachePath))return null;let e=await this.readCacheData();if(!e){let i=await Wr.default.stat(this.cachePath);return{tripleCount:0,createdAt:new Date(i.mtimeMs),isValid:!1,sizeBytes:i.size}}let t=await Wr.default.stat(this.cachePath),n=await this.isCacheValid();return{tripleCount:e.metadata.tripleCount,createdAt:new Date(e.metadata.timestamp),isValid:n,sizeBytes:t.size}}catch{return null}}async saveInferredTriples(e){let t=await this.readCacheData();if(!t)throw new Error(`Cannot save inferred triples: no valid cache at ${this.cachePath} (build the cache first)`);let n=this.assembleCacheData(t.files,e.map(this.serializeTriple),{fileSpacePrefixes:t.metadata.fileSpacePrefixes,fileSpaceDeclarations:t.metadata.fileSpaceDeclarations,inferenceEnabled:!0});await this.writeCacheData(n)}assembleCacheData(e,t,n){let i=0;for(let s of e)i+=s.triples.length;return{metadata:{version:this.cliVersion,timestamp:Date.now(),vaultPath:this.vaultPath,tripleCount:i+t.length,formatVersion:mO,fileCount:e.length,inferredCount:t.length,fileSpacePrefixes:n.fileSpacePrefixes,fileSpaceDeclarations:n.fileSpaceDeclarations,inferenceEnabled:n.inferenceEnabled},files:e,inferred:t}}async writeCacheData(e){await Wr.default.ensureDir(mi.default.dirname(this.cachePath)),await this.removeStaleTempFiles();let t=`${this.cachePath}.${process.pid}.${i6.default.randomBytes(6).toString("hex")}.tmp`;try{await Wr.default.writeJson(t,e,{spaces:0});let n=await Wr.default.stat(t);await Wr.default.rename(t,this.cachePath),this.loaded=e,this.loadedStamp={mtimeMs:n.mtimeMs,size:n.size}}catch(n){throw await Wr.default.remove(t).catch(()=>{}),n}}serializeTriple(e){return{subject:za(e.subject),predicate:za(e.predicate),object:za(e.object)}}deserializeTriple(e){return new ln.Triple(ng(e.subject),ng(e.predicate),ng(e.object))}};a(fO,"isEmptyDiff");a(mw,"diffManifest");a(dO,"isFile");a(ZB,"isTBoxBasename");a(pO,"entryHasTBoxLabel");a(Ume,"entryRefersTo");a(Bme,"linkpathOf");a(e6,"entryAliases");a(Vme,"frontmatterAliases");a(c6,"rawFrontmatterAliases");a(Gme,"frontmatterHasTBoxFormAlias");a(qme,"entryHasTBoxFormAlias");a(Wme,"sameSet");a(hO,"sameList");a(yO,"tboxRebuildReason");a(t6,"tboxProjection");a(zme,"tboxProjectionChanged");a(Hme,"frontmatterDeclaresFileSpaceAnyForm");a(l6,"isSafeRelativePath");a(r6,"isInferenceRelevant");a(n6,"hasPrototype");a(u6,"inferenceInputsChanged")});var p6={};Vu(p6,{cacheLoadNotice:()=>wu,loadVaultTriples:()=>gi,writeThroughCache:()=>wO,writeThroughNotice:()=>EO});async function gi(r,e){if(e.useCache){let l=e.cacheManager??new Su(r),u=SO.default.join(SO.default.resolve(r),".exocortex","cache","triples.json");if(l.getCachePath()!==u)throw new Error(`loadVaultTriples: the given CacheManager belongs to ${l.getCachePath()}, not to vault ${r}`);let f=await l.loadOrBuild();return{triples:f.triples,cacheHit:f.cacheHit,mode:f.mode,reparsedFiles:f.reparsedFiles,cacheManager:l,explicitCount:f.explicitCount,zeroTriplePaths:f.zeroTriplePaths}}let t=e.vaultAdapter??new er(r),n=new d6.NoteToRDFConverter(t),i=t.getAllFiles(),s=new Map,o=await n.convertVault({onFileTriples:a((l,u)=>{s.set(l.path,u.length)},"onFileTriples")}),c=i.filter(l=>(s.get(l.path)??0)===0).map(l=>l.path);return{triples:o,cacheHit:!1,mode:"full-parse",explicitCount:o.length,zeroTriplePaths:c}}function wu(r){switch(r.mode){case"hit":return"\u26A1 triple cache: hit";case"delta":return`\u267B\uFE0F  triple cache: delta (${r.reparsedFiles??0} file(s) re-parsed)`;case"rebuild":{let e=r.triples.length-r.explicitCount,t=e>0?` + inferred layer (${e})`:"";return`\u{1F528} triple cache: rebuild (${r.reparsedFiles??0} file(s) parsed, cache written${t})`}default:return"triple cache: not used (full parse)"}}async function wO(r){try{return await r.refreshAfterWrite()}catch(e){return{mode:"failed",reparsedFiles:0,reason:e instanceof Error?e.message:String(e)}}}function EO(r){switch(r.mode){case"delta":return`\u{1F4BE} triple cache: write-through persisted (${r.reparsedFiles} file(s) re-parsed)`;case"noop":return"\u{1F4BE} triple cache: write-through \u2014 nothing changed";case"skipped":return`\u{1F4BE} triple cache: write-through skipped (${r.reason??"unknown"})`;default:return`\u26A0 triple cache: write-through failed (${r.reason}) \u2014 command result unaffected; the next --use-cache run refreshes the cache itself`}}var SO,d6,Ha=Ve(()=>{"use strict";SO=te(require("path")),d6=te(Me());Mo();gw();a(gi,"loadVaultTriples");a(wu,"cacheLoadNotice");a(wO,"writeThroughCache");a(EO,"writeThroughNotice")});function tp(r){let e=new Set,t=/PREFIX\s+(\w+)\s*:/gi,n;for(;(n=t.exec(r))!==null;)e.add(n[1].toLowerCase());let i=q6.SPARQL_PREFIXES.split(`
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f6={};Vu(f6,{CACHE_FORMAT_VERSION:()=>mO,CacheManager:()=>Su,DELTA_REBUILD_RATIO:()=>gO,STALE_TMP_MAX_AGE_MS:()=>s6,deserializeNode:()=>ng,diffManifest:()=>mw,inferenceInputsChanged:()=>u6,isSafeRelativePath:()=>l6,serializeNode:()=>za});function fO(r){return r.added.length===0&&r.modified.length===0&&r.removed.length===0}function mw(r,e){let t=[],n=[],i=[],s=new Map;for(let o of r)s.set(o.path,{mtimeMs:o.mtimeMs,size:o.size});for(let[o,c]of e){let l=s.get(o);l===void 0?t.push(o):(l.mtimeMs!==c.mtimeMs||l.size!==c.size)&&n.push(o)}for(let o of s.keys())e.has(o)||i.push(o);return{added:t,modified:n,removed:i}}function dO(r){return typeof r.basename=="string"}function ZB(r){return Xd.test(mi.default.basename(r,mi.default.extname(r)))}function pO(r){if(r.tboxLabel)return!0;let e=(0,ln.vaultPathToIRI)(r.path);for(let t of r.triples)if(t.subject.type==="IRI"&&t.subject.value===e&&t.predicate.type==="IRI"&&t.predicate.value.endsWith(o6)&&(t.object.type==="IRI"||t.object.type==="Literal"&&Xd.test(t.object.value)))return!0;return!1}function Ume(r,e,t){for(let n of r.triples)if(n.object.type==="IRI"){if(e.has(n.object.value))return!0}else if(n.object.type==="Literal"&&t.size>0&&t.has(Bme(n.object.value)))return!0;return!1}function Bme(r){let e=r.trim();e.startsWith("[[")&&e.endsWith("]]")&&(e=e.slice(2,-2));let t=e.indexOf("|");return t>=0&&(e=e.slice(0,t)),e=e.trim().toLowerCase(),e.endsWith(".md")?e.slice(0,-3):e}function e6(r){let e=(0,ln.vaultPathToIRI)(r.path),t=new Set;for(let n of r.triples)n.subject.type==="IRI"&&n.subject.value===e&&n.predicate.type==="IRI"&&n.predicate.value.endsWith(bO)&&n.object.type==="Literal"&&t.add(n.object.value.trim().toLowerCase());return t}function Vme(r){let e=new Set;for(let t of c6(r))e.add(t.toLowerCase());return e}function c6(r){let e=r?.aliases,t=Array.isArray(e)?e:e==null?[]:[e],n=[];for(let i of t)typeof i=="string"&&i.trim()!==""&&n.push(i.trim());return n}function Gme(r){return c6(r).some(e=>Xd.test(e))}function qme(r){let e=(0,ln.vaultPathToIRI)(r.path);for(let t of r.triples)if(t.subject.type==="IRI"&&t.subject.value===e&&t.predicate.type==="IRI"&&t.predicate.value.endsWith(bO)&&(t.object.type==="IRI"||t.object.type==="Literal"&&Xd.test(t.object.value.trim())))return!0;return!1}function Wme(r,e){if(r.size!==e.size)return!1;for(let t of r)if(!e.has(t))return!1;return!0}function hO(r,e){if(r.length!==e.length)return!1;for(let t=0;t<r.length;t++)if(r[t]!==e[t])return!1;return!0}function yO(r,e){return r.newLabel?`TBox-form asset changed: ${e}`:r.hadLabel?`asset lost its TBox-form label: ${e}`:`TBox-form alias: ${e}`}function t6(r,e){let t=(0,ln.vaultPathToIRI)(r),n=[],i=[],s=[];for(let o of e){if(o.subject.type!=="IRI"||o.subject.value!==t||o.predicate.type!=="IRI")continue;let c=o.predicate.value;c.endsWith(o6)?o.object.type==="IRI"&&n.push(o.object.value):c.endsWith(bO)?o.object.type==="IRI"&&i.push(o.object.value):c.endsWith(a6)&&s.push(`${o.object.type}:${o.object.value}|${o.object.datatype??""}|${o.object.language??""}`)}return i.sort(),{label:n,tboxAliases:i,instanceClass:s}}function zme(r,e,t,n){let i=t6(r,e),s=t6(r,t);return hO(i.label,s.label)?hO(i.tboxAliases,s.tboxAliases)?hO(i.instanceClass,s.instanceClass)?null:`TBox-form asset class changed: ${r}`:`TBox-form alias: ${r}`:yO(n,r)}function Hme(r){if((0,ln.frontmatterDeclaresFileSpace)(r))return!0;let e=r.exo__Instance_class;return(Array.isArray(e)?e:[e]).some(n=>typeof n=="string"&&/\bexo__FileSpace\b/.test(n))}function l6(r){return r.length===0||mi.default.isAbsolute(r)||/^[a-zA-Z]:/.test(r)||/^[\\/]/.test(r)?!1:!r.split(/[\\/]/).some(e=>e==="..")}function r6(r){return r.predicate.type==="IRI"&&$me.some(e=>r.predicate.value.endsWith(e))}function n6(r){return!!r&&r.triples.some(e=>e.predicate.type==="IRI"&&e.predicate.value.endsWith(_O))}function u6(r,e,t){let n=new Map;for(let s of r.files)n.set(s.path,s);let i=new Set;for(let s of r.files)for(let o of s.triples)o.object.type==="IRI"&&o.predicate.type==="IRI"&&o.predicate.value.endsWith(_O)&&i.add(o.object.value);for(let s of t){let o=n.get(s),c=e.get(s);if(n6(o)||n6(c)||i.has((0,ln.vaultPathToIRI)(s)))return!0;let l=a(d=>`${d.subject.type}:${d.subject.value}|${d.predicate.value}|${d.object.type}:${d.object.value}`,"key"),u=(o?.triples??[]).filter(r6).map(l).sort(),f=(c?.triples??[]).filter(r6).map(l).sort();if(u.length!==f.length)return!0;for(let d=0;d<u.length;d++)if(u[d]!==f[d])return!0}return!1}var mi,i6,Wr,ln,mO,gO,s6,Xd,o6,bO,_O,a6,$me,Su,gw=Ve(()=>{"use strict";mi=te(require("path")),i6=te(require("crypto")),Wr=te(Ba()),ln=te(Me());Mo();lO();uO();mO=3,gO=.5,s6=600*1e3,Xd=/^[a-z][a-zA-Z0-9]*__\S+$/,o6="#Asset_label",bO="#Asset_aliases",_O="#Asset_prototype",a6="#Instance_class",$me=[a6,"#Class_superClass","#type",_O],Su=class r{constructor(e){this.cliVersion="1.0.0";this.loaded=null;this.loadedStamp=null;this.vaultPath=mi.default.resolve(e),this.cachePath=mi.default.join(this.vaultPath,".exocortex","cache","triples.json")}static{a(this,"CacheManager")}getCachePath(){return this.cachePath}async isCacheValid(){let e=await this.computeManifestDiff();return e!==null&&fO(e)}async computeManifestDiff(){let e=await this.readCacheData();if(!e)return null;let t=this.computeFileManifest();return t?mw(e.files,t):null}async loadOrBuild(){let e=Date.now(),t=await this.readCacheData();if(!t)return this.rebuild(e,"cache absent, corrupt or legacy format",null);let n=this.computeFileManifest();if(!n)return this.rebuild(e,"vault could not be walked",t);let i=mw(t.files,n);if(fO(i))return{triples:this.materializeTriples(t),explicitCount:r.explicitCountOf(t),zeroTriplePaths:r.zeroTriplePathsOf(t),cacheHit:!0,durationMs:Date.now()-e,mode:"hit",reparsedFiles:0};let s=new er(this.vaultPath),o=await this.planDelta(t,n,i,s);if(o.rebuildReason)return this.rebuild(e,o.rebuildReason,t);let c=await this.applyDelta(t,n,i,o.reparse,s);return{triples:c.triples,explicitCount:r.explicitCountOf(c.data),zeroTriplePaths:r.zeroTriplePathsOf(c.data),cacheHit:!0,durationMs:Date.now()-e,mode:"delta",reparsedFiles:o.reparse.length,inferredRecomputed:c.inferredRecomputed}}static explicitCountOf(e){let t=0;for(let n of e.files)t+=n.triples.length;return t}static zeroTriplePathsOf(e){let t=[];for(let n of e.files)n.triples.length===0&&t.push(n.path);return t}async refreshAfterWrite(){let e=await this.loadedIsCurrent()?this.loaded:await this.readCacheData();if(!e)return{mode:"skipped",reparsedFiles:0,reason:"no cache to refresh"};let t=new er(this.vaultPath),n=this.computeFileManifest(t);if(!n)return{mode:"skipped",reparsedFiles:0,reason:"vault could not be walked"};let i=mw(e.files,n);if(fO(i))return{mode:"noop",reparsedFiles:0};let s=await this.planDelta(e,n,i,t);return s.rebuildReason?{mode:"skipped",reparsedFiles:0,reason:`rebuild needed (${s.rebuildReason}) \u2014 left to the next reader`}:(await this.applyDelta(e,n,i,s.reparse,t,{needTriples:!1}),{mode:"delta",reparsedFiles:s.reparse.length})}async rebuild(e,t,n){let i=await this.buildInternal({strict:!1,materializeInference:n?.metadata.inferenceEnabled===!0});return{triples:i.triples.concat(i.inferred),explicitCount:i.triples.length,zeroTriplePaths:r.zeroTriplePathsOf(i.data),cacheHit:!1,durationMs:Date.now()-e,mode:"rebuild",reparsedFiles:i.data.files.length,rebuildReason:t}}materializeTriples(e){let t=[];for(let n of e.files)for(let i of n.triples)t.push(this.deserializeTriple(i));for(let n of e.inferred)t.push(this.deserializeTriple(n));return t}async readCacheData(){try{if(!await Wr.default.pathExists(this.cachePath))return null;let e=await this.statCache(),t=await Wr.default.readJson(this.cachePath);if(!t.metadata||t.metadata.formatVersion!==mO||typeof t.metadata.tripleCount!="number"||!Array.isArray(t.files)||!Array.isArray(t.inferred))return null;for(let i of t.files)if(typeof i?.path!="string"||!l6(i.path)||typeof i.mtimeMs!="number"||typeof i.size!="number"||!Array.isArray(i.triples))return null;let n={metadata:{...t.metadata,fileSpacePrefixes:Array.isArray(t.metadata.fileSpacePrefixes)?t.metadata.fileSpacePrefixes:[],fileSpaceDeclarations:Array.isArray(t.metadata.fileSpaceDeclarations)?t.metadata.fileSpaceDeclarations:[],inferenceEnabled:typeof t.metadata.inferenceEnabled=="boolean"?t.metadata.inferenceEnabled:t.inferred.length>0},files:t.files,inferred:t.inferred};return this.loaded=n,this.loadedStamp=e,n}catch{return null}}async statCache(){try{let e=await Wr.default.stat(this.cachePath);return{mtimeMs:e.mtimeMs,size:e.size}}catch{return null}}async loadedIsCurrent(){if(!this.loaded||!this.loadedStamp)return!1;let e=await this.statCache();return e!==null&&e.mtimeMs===this.loadedStamp.mtimeMs&&e.size===this.loadedStamp.size}computeFileManifest(e){try{let t=e??new er(this.vaultPath),n=new Map;for(let i of t.getAllFiles())try{let s=Wr.default.statSync(mi.default.join(this.vaultPath,i.path));n.set(i.path,{mtimeMs:s.mtimeMs,size:s.size})}catch{}return n}catch{return null}}async planDelta(e,t,n,i){let s=n.added.length+n.modified.length+n.removed.length,o=Math.max(e.files.length,t.size,1);if(s>o*gO)return{reparse:[],rebuildReason:`${s} of ${o} files changed (> ${gO*100}%)`};let c=new Map;for(let m of e.files)c.set(m.path,m);let l=new Set(e.metadata.fileSpaceDeclarations),u=new Set,f=new Set;for(let m of n.removed){if(l.has(m))return{reparse:[],rebuildReason:`FileSpace declaration removed: ${m}`};if(ZB(m))return{reparse:[],rebuildReason:`TBox-form file removed: ${m}`};let b=c.get(m);if(b&&pO(b))return{reparse:[],rebuildReason:`TBox-form asset removed: ${m}`};u.add((0,ln.vaultPathToIRI)(m))}let d=new Map;for(let m of[...n.added,...n.modified]){if(l.has(m))return{reparse:[],rebuildReason:`FileSpace declaration changed: ${m}`};if(ZB(m))return{reparse:[],rebuildReason:`TBox-form file changed: ${m}`};let b=i.getAbstractFileByPath(m),_=b&&dO(b)?b:null,w=_?i.getFrontmatter(_):null;if(w&&Hme(w))return{reparse:[],rebuildReason:`FileSpace declaration changed: ${m}`};d.set(m,{file:_,frontmatter:w})}let p=null;for(let[m,{file:b,frontmatter:_}]of d){let w=c.get(m),I=_?.exo__Asset_label,E={newLabel:typeof I=="string"&&Xd.test(I),hadLabel:w!==void 0&&pO(w),newAlias:Gme(_),hadAlias:w!==void 0&&qme(w)},S;if(E.newLabel||E.hadLabel||E.newAlias||E.hadAlias){if(!w||w.triples.length===0||!b)return{reparse:[],rebuildReason:yO(E,m)};p??=new ln.NoteToRDFConverter(i);let O;try{O=(await p.convertNote(b)).map(this.serializeTriple)}catch{return{reparse:[],rebuildReason:yO(E,m)}}let x=zme(m,w.triples,O,E);if(x)return{reparse:[],rebuildReason:x};S=e6({path:m,mtimeMs:0,size:0,triples:O})}else S=Vme(_);let R=w?e6(w):new Set;if(w&&!Wme(R,S)){let O=!1;for(let x of R)S.has(x)||(f.add(x),O=!0);for(let x of S)R.has(x)||f.add(x);O&&u.add((0,ln.vaultPathToIRI)(m))}if(!w)for(let O of S)f.add(O)}for(let m of n.added){let b=mi.default.basename(m);u.add((0,ln.vaultPathToIRI)(b)),f.add(mi.default.basename(m,mi.default.extname(m)).toLowerCase())}let h=new Set([...n.added,...n.modified]),g=new Set(n.removed);if(u.size>0||f.size>0)for(let m of e.files)h.has(m.path)||g.has(m.path)||Ume(m,u,f)&&h.add(m.path);return{reparse:[...h]}}async applyDelta(e,t,n,i,s,o={needTriples:!0}){let c=[];for(let R of i){let O=s.getAbstractFileByPath(R);O&&dO(O)&&c.push(O)}let l=new Map;await new ln.NoteToRDFConverter(s).convertVaultWithValidation({strict:!1,files:c,fileSpacePrefixes:e.metadata.fileSpacePrefixes,onFileTriples:a((R,O)=>{l.set(R.path,O)},"onFileTriples")});let f=new Set(i),d=new Set(n.removed),p=a(R=>this.makeEntry(R,t,l.get(R)??[],s),"makeEntry"),h=[];for(let R of e.files)d.has(R.path)||h.push(f.has(R.path)?p(R.path):R);let g=new Set(h.map(R=>R.path));for(let R of t.keys())g.has(R)||h.push(p(R));let m=null,b=a(()=>{if(m===null){m=[];for(let R of h)for(let O of R.triples)m.push(this.deserializeTriple(O))}return m},"explicitTriples"),_=[],w=[],I=!1;if(e.metadata.inferenceEnabled){let R=new Map;for(let O of h)R.set(O.path,O);u6(e,R,[...f,...d])?(w=(await ig(b())).inferred,_=w.map(this.serializeTriple),I=!0):(_=e.inferred,o.needTriples&&(w=e.inferred.map(this.deserializeTriple)))}let E=this.assembleCacheData(h,_,{fileSpacePrefixes:e.metadata.fileSpacePrefixes,fileSpaceDeclarations:e.metadata.fileSpaceDeclarations,inferenceEnabled:e.metadata.inferenceEnabled});await this.writeCacheData(E);let S=o.needTriples?b().concat(w):[];return{data:E,triples:S,inferredRecomputed:I}}makeEntry(e,t,n,i){let s=t.get(e),o={path:e,mtimeMs:s?.mtimeMs??0,size:s?.size??0,triples:n.map(this.serializeTriple)},c=pO(o);if(!c&&n.length===0){let l=i.getAbstractFileByPath(e),f=(l&&dO(l)?i.getFrontmatter(l):null)?.exo__Asset_label;c=typeof f=="string"&&Xd.test(f)}return c&&(o.tboxLabel=!0),o}async buildCache(){let e=await this.buildCacheWithValidation({strict:!1});return{tripleCount:e.tripleCount,durationMs:e.durationMs}}async buildCacheWithValidation(e={}){return(await this.buildInternal(e)).result}async buildInternal(e){let t=Date.now(),n=new er(this.vaultPath),i=n.getAllFiles(),s=new Map;for(let h of i)try{let g=Wr.default.statSync(mi.default.join(this.vaultPath,h.path));s.set(h.path,{mtimeMs:g.mtimeMs,size:g.size})}catch{}let o=new Map,l=await new ln.NoteToRDFConverter(n).convertVaultWithValidation({strict:e.strict??!1,files:i,onFileTriples:a((h,g)=>{o.set(h.path,g)},"onFileTriples")}),u=[];for(let h of i)s.has(h.path)&&u.push(this.makeEntry(h.path,s,o.get(h.path)??[],n));let f=[];for(let h of i){if(!s.has(h.path))continue;let g=o.get(h.path);g&&f.push(...g)}let d=[];e.materializeInference&&(d=(await ig(f)).inferred);let p=this.assembleCacheData(u,d.map(this.serializeTriple),{fileSpacePrefixes:l.fileSpaces?.prefixes??[],fileSpaceDeclarations:l.fileSpaces?.declarationPaths??[],inferenceEnabled:e.materializeInference===!0});return await this.writeCacheData(p),{result:{tripleCount:l.triples.length,durationMs:Date.now()-t,skippedFiles:l.skippedFiles,summary:l.summary},data:p,triples:f,inferred:d}}async validateVault(){let e=new er(this.vaultPath);return new ln.NoteToRDFConverter(e).validateVault()}async invalidate(){await Wr.default.pathExists(this.cachePath)&&await Wr.default.remove(this.cachePath),await this.removeStaleTempFiles()}async removeStaleTempFiles(){let e=mi.default.dirname(this.cachePath),t=`${mi.default.basename(this.cachePath)}.`,n;try{n=await Wr.default.readdir(e)}catch{return}let i=Date.now()-s6;for(let s of n){if(!s.startsWith(t)||!s.endsWith(".tmp"))continue;let o=mi.default.join(e,s);try{(await Wr.default.stat(o)).mtimeMs<i&&await Wr.default.remove(o)}catch{}}}async getCacheStats(){try{if(!await Wr.default.pathExists(this.cachePath))return null;let e=await this.readCacheData();if(!e){let i=await Wr.default.stat(this.cachePath);return{tripleCount:0,createdAt:new Date(i.mtimeMs),isValid:!1,sizeBytes:i.size}}let t=await Wr.default.stat(this.cachePath),n=await this.isCacheValid();return{tripleCount:e.metadata.tripleCount,createdAt:new Date(e.metadata.timestamp),isValid:n,sizeBytes:t.size}}catch{return null}}async saveInferredTriples(e){let t=await this.readCacheData();if(!t)throw new Error(`Cannot save inferred triples: no valid cache at ${this.cachePath} (build the cache first)`);let n=this.assembleCacheData(t.files,e.map(this.serializeTriple),{fileSpacePrefixes:t.metadata.fileSpacePrefixes,fileSpaceDeclarations:t.metadata.fileSpaceDeclarations,inferenceEnabled:!0});await this.writeCacheData(n)}assembleCacheData(e,t,n){let i=0;for(let s of e)i+=s.triples.length;return{metadata:{version:this.cliVersion,timestamp:Date.now(),vaultPath:this.vaultPath,tripleCount:i+t.length,formatVersion:mO,fileCount:e.length,inferredCount:t.length,fileSpacePrefixes:n.fileSpacePrefixes,fileSpaceDeclarations:n.fileSpaceDeclarations,inferenceEnabled:n.inferenceEnabled},files:e,inferred:t}}async writeCacheData(e){await Wr.default.ensureDir(mi.default.dirname(this.cachePath)),await this.removeStaleTempFiles();let t=`${this.cachePath}.${process.pid}.${i6.default.randomBytes(6).toString("hex")}.tmp`;try{await Wr.default.writeJson(t,e,{spaces:0});let n=await Wr.default.stat(t);await Wr.default.rename(t,this.cachePath),this.loaded=e,this.loadedStamp={mtimeMs:n.mtimeMs,size:n.size}}catch(n){throw await Wr.default.remove(t).catch(()=>{}),n}}serializeTriple(e){return{subject:za(e.subject),predicate:za(e.predicate),object:za(e.object)}}deserializeTriple(e){return new ln.Triple(ng(e.subject),ng(e.predicate),ng(e.object))}};a(fO,"isEmptyDiff");a(mw,"diffManifest");a(dO,"isFile");a(ZB,"isTBoxBasename");a(pO,"entryHasTBoxLabel");a(Ume,"entryRefersTo");a(Bme,"linkpathOf");a(e6,"entryAliases");a(Vme,"frontmatterAliases");a(c6,"rawFrontmatterAliases");a(Gme,"frontmatterHasTBoxFormAlias");a(qme,"entryHasTBoxFormAlias");a(Wme,"sameSet");a(hO,"sameList");a(yO,"tboxRebuildReason");a(t6,"tboxProjection");a(zme,"tboxProjectionChanged");a(Hme,"frontmatterDeclaresFileSpaceAnyForm");a(l6,"isSafeRelativePath");a(r6,"isInferenceRelevant");a(n6,"hasPrototype");a(u6,"inferenceInputsChanged")});var p6={};Vu(p6,{cacheLoadNotice:()=>wu,loadVaultTriples:()=>gi,writeThroughCache:()=>wO,writeThroughNotice:()=>EO});async function gi(r,e){if(e.useCache){let l=e.cacheManager??new Su(r),u=SO.default.join(SO.default.resolve(r),".exocortex","cache","triples.json");if(l.getCachePath()!==u)throw new Error(`loadVaultTriples: the given CacheManager belongs to ${l.getCachePath()}, not to vault ${r}`);let f=await l.loadOrBuild();return{triples:f.triples,cacheHit:f.cacheHit,mode:f.mode,reparsedFiles:f.reparsedFiles,cacheManager:l,explicitCount:f.explicitCount,zeroTriplePaths:f.zeroTriplePaths}}let t=e.vaultAdapter??new er(r),n=new d6.NoteToRDFConverter(t),i=t.getAllFiles(),s=new Map,o=await n.convertVault({onFileTriples:a((l,u)=>{s.set(l.path,u.length)},"onFileTriples")}),c=i.filter(l=>(s.get(l.path)??0)===0).map(l=>l.path);return{triples:o,cacheHit:!1,mode:"full-parse",explicitCount:o.length,zeroTriplePaths:c}}function wu(r){switch(r.mode){case"hit":return"\u26A1 triple cache: hit";case"delta":return`\u267B\uFE0F  triple cache: delta (${r.reparsedFiles??0} file(s) re-parsed)`;case"rebuild":{let e=r.triples.length-r.explicitCount,t=e>0?` + inferred layer (${e})`:"";return`\u{1F528} triple cache: rebuild (${r.reparsedFiles??0} file(s) parsed, cache written${t})`}default:return"triple cache: not used (full parse)"}}async function wO(r){try{return await r.refreshAfterWrite()}catch(e){return{mode:"failed",reparsedFiles:0,reason:e instanceof Error?e.message:String(e)}}}function EO(r){switch(r.mode){case"delta":return`\u{1F4BE} triple cache: write-through persisted (${r.reparsedFiles} file(s) re-parsed)`;case"noop":return"\u{1F4BE} triple cache: write-through \u2014 nothing changed";case"skipped":return`\u{1F4BE} triple cache: write-through skipped (${r.reason??"unknown"})`;default:return`\u26A0 triple cache: write-through failed (${r.reason}) \u2014 command result unaffected; the next --use-cache run refreshes the cache itself`}}var SO,d6,Ha=Ve(()=>{"use strict";SO=te(require("path")),d6=te(Me());Mo();gw();a(gi,"loadVaultTriples");a(wu,"cacheLoadNotice");a(wO,"writeThroughCache");a(EO,"writeThroughNotice")});function tp(r){let e=new Set,t=/PREFIX\s+(\w+)\s*:/gi,n;for(;(n=t.exec(r))!==null;)e.add(n[1].toLowerCase());let i=q6.SPARQL_PREFIXES.split(`
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 `)+`
 `+r}function Dw(r){return r.replace(Qge,(e,t,n,i,s)=>W6.has(n.toLowerCase())?`${n}:${i}`:e)}function Lw(r){let e=new Map(r);for(let t of W6)e.delete(t);return e}var q6,Yge,Xge,W6,Qge,Nw=Ve(()=>{"use strict";q6=te(Me()),Yge="https://exocortex.my/ontology/",Xge=/^[a-z][a-zA-Z0-9]*$/,W6=new Set(["exo","ems","ims","gtd","period","lit","inbox","rdf","rdfs","owl","xsd"]),Qge=/(<)([a-zA-Z][a-zA-Z0-9]*)__([a-zA-Z][a-zA-Z0-9_]*)(>)/g;a(tp,"injectExocortexPrefixes");a(Dw,"transformShorthandNotation");a(Lw,"filterOntologyPrefixes")});function a8(r){let e=rp.Namespace.EXO.term("Asset_label").value,t=new Map;for(let i of r){if(i.predicate.value!==e||!(i.object instanceof rp.DomainIRI)||rp.Namespace.fromTermIRI(i.object.value)===null)continue;let s=i.object.value,o=t.get(s);o||(o=new Set,t.set(s,o));let c=i.subject;o.add(c instanceof rp.DomainIRI?c.value:String(c))}let n=[];for(let[i,s]of t){if(s.size<2)continue;let o=[...s].sort();for(let c of o){if(c.startsWith("_:")||c.startsWith("<<"))continue;let l=o.filter(u=>u!==c);n.push({focusNode:c,propertyPath:e,severity:"sh:Warning",message:`term-IRI collision: <${i}> is emitted by ${o.length} assets \u2014 a join from a predicate to its definition resolves to all of them. Also emitted by: ${l.join(", ")}`,constraint:"term-iri-collision",actualValue:i})}}return n}var rp,c8=Ve(()=>{"use strict";rp=te(Me());a(a8,"detectTermIriCollisions")});function Rye(r,e){if(!r)return!1;let t=r.exo__Instance_class;if(t==null)return!1;let n=Array.isArray(t)?t:[t];for(let i of n){if(typeof i!="string")continue;let s=i.match(/\[\[([^|\]]+)/),o=s?s[1]:i;if(o===e||o.includes(e))return!0}return!1}async function u8(r,e){let t=await gi(r,{useCache:e});return{triples:t.triples,cacheHit:t.cacheHit}}function f8(r){let e=r.match(/^---\r?\n([\s\S]*?)\r?\n---/);if(!e)return r.match(/^---\r?\n---/)?{}:null;let t=e[1].split(`
@@ -685,7 +685,7 @@ Next steps:
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 ${c}`,!0)}let o=H_e(s.stdout);return bp(o===void 0?s.stdout.trim():JSON.stringify(o))}};var SV=require("child_process");var K_e=32*1024*1024;function wV(r){return e=>new Promise(t=>{(0,SV.execFile)(process.execPath,[r,...e],{maxBuffer:K_e},(n,i,s)=>{let o=0;if(n){let c=n.code;o=typeof c=="number"?c:1}t({stdout:i,stderr:s,exitCode:o})})})}a(wV,"createSelfCliRunner");async function Y_e(r,e,t){let n=(0,EV.createInterface)({input:e,crlfDelay:1/0});for await(let i of n){let s=i.trim();if(s.length===0)continue;let o;try{o=JSON.parse(s)}catch{t(JSON.stringify({jsonrpc:"2.0",id:null,error:{code:bV,message:"Parse error: invalid JSON"}})+`
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-`)}}a(Y_e,"runStdioServer");function vV(r){return new he("mcp").description("Run an MCP (Model Context Protocol) stdio server exposing create_asset / create_effort tools backed by this CLI").option("--entry <path>","Path to the CLI entry script the tools invoke (defaults to this process's script)").action(async e=>{let t=e.entry??process.argv[1],n=new IE({runCli:wV(t),version:r??"unknown"});await Y_e(n,process.stdin,i=>process.stdout.write(i))})}a(vV,"mcpCommand");function RE(r){let e=new he;return e.name("exocortex").description("CLI tool for Exocortex knowledge management system - SPARQL queries, task management, and more").version(r??"16.248.0"),e.addCommand(r7()),e.addCommand(f7()),e.addCommand(K6()),e.addCommand(J6()),e.addCommand(S8()),e.addCommand(Z6()),e.addCommand(s8()),e.addCommand(o8()),e.addCommand(C8()),e.addCommand(D8()),e.addCommand(z8()),e.addCommand(Y8()),e.addCommand(X8()),e.addCommand(J8()),e.addCommand(Z8()),e.addCommand(k7()),e.addCommand($7()),e.addCommand(eV()),e.addCommand(rV()),e.addCommand(sV()),e.addCommand(oV()),e.addCommand(lV()),e.addCommand(W7()),e.addCommand(Q7()),e.addCommand(uV()),e.addCommand(vV(r??"16.248.0")),e}a(RE,"createProgram");RE().parse();0&&(module.exports={createProgram});
+`)}}a(Y_e,"runStdioServer");function vV(r){return new he("mcp").description("Run an MCP (Model Context Protocol) stdio server exposing create_asset / create_effort tools backed by this CLI").option("--entry <path>","Path to the CLI entry script the tools invoke (defaults to this process's script)").action(async e=>{let t=e.entry??process.argv[1],n=new IE({runCli:wV(t),version:r??"unknown"});await Y_e(n,process.stdin,i=>process.stdout.write(i))})}a(vV,"mcpCommand");function RE(r){let e=new he;return e.name("exocortex").description("CLI tool for Exocortex knowledge management system - SPARQL queries, task management, and more").version(r??"16.248.1"),e.addCommand(r7()),e.addCommand(f7()),e.addCommand(K6()),e.addCommand(J6()),e.addCommand(S8()),e.addCommand(Z6()),e.addCommand(s8()),e.addCommand(o8()),e.addCommand(C8()),e.addCommand(D8()),e.addCommand(z8()),e.addCommand(Y8()),e.addCommand(X8()),e.addCommand(J8()),e.addCommand(Z8()),e.addCommand(k7()),e.addCommand($7()),e.addCommand(eV()),e.addCommand(rV()),e.addCommand(sV()),e.addCommand(oV()),e.addCommand(lV()),e.addCommand(W7()),e.addCommand(Q7()),e.addCommand(uV()),e.addCommand(vV(r??"16.248.1")),e}a(RE,"createProgram");RE().parse();0&&(module.exports={createProgram});
 /*! Bundled license information:
 reflect-metadata/Reflect.js:

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@kitelev/exocortex-cli",
-  "version": "16.248.0",
+  "version": "16.248.1",
   "description": "CLI tool for Exocortex knowledge management system - SPARQL queries, task management, and more",
   "main": "dist/index.js",
   "bin": {