@js4cytoscape/ndex-client 0.6.0-alpha.5 → 0.6.0-alpha.6

package/dist/index.global.js

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Ie=class{constructor(e=1234,t){this._port=e,this.cyRestBaseURL=t?.cyRestBaseURL||"http://127.0.0.1",this.ndexBaseURL=t?.ndexBaseURL||"https://www.ndexbio.org",this.axiosInstance=H.create({baseURL:this.cyRestURL(),timeout:3e4,headers:{"Content-Type":"application/json"}});}get port(){return this._port}static get cyRestBaseURL(){return "http://127.0.0.1"}setNDExBaseURL(e){e?.trim()&&(this.ndexBaseURL=e.trim());}getNDExBaseURL(){return this.ndexBaseURL}setBasicAuth(e,t){e?.trim()&&t&&(this.authConfig={type:k.BASIC,username:e.trim(),password:t});}setAuthToken(e){e?.trim()&&(this.authConfig={type:k.OAUTH,idToken:e.trim()});}clearAuth(){delete this.authConfig;}cyRestURL(){return `${this.cyRestBaseURL}:${this._port}`}getAuthFields(){if(!this.authConfig)return {};switch(this.authConfig.type){case k.BASIC:return {username:this.authConfig.username,password:this.authConfig.password};case k.OAUTH:return {idToken:this.authConfig.idToken};default:return {}}}async _httpGet(e){return (await this.axiosInstance.get(e)).data}async _httpPost(e,t,r){return (await this.axiosInstance.post(e,r,{params:t})).data}async _httpPut(e,t,r){return (await this.axiosInstance.put(e,r,{params:t})).data}async getCyNDExStatus(){return this._httpGet("/cyndex2/v1")}async getCytoscapeNetworkSummary(e="current"){return this._httpGet(`/cyndex2/v1/networks/${e}`)}async postNDExNetworkToCytoscape(e,t,r){let n={serverUrl:`${this.ndexBaseURL}/v2`,uuid:e,...this.getAuthFields()};return t!==void 0&&(n.accessKey=t),r!==void 0&&(n.createView=r),this._httpPost("/cyndex2/v1/networks",void 0,n)}async postCXNetworkToCytoscape(e){return this._httpPost("/cyndex2/v1/networks/cx",void 0,e)}async postCX2NetworkToCytoscape(e,t,r){let n={format:"cx2",collection:r,title:t};return this._httpPost("/v1/networks",n,e)}async postCytoscapeNetworkToNDEx(e="current"){let t={serverUrl:`${this.ndexBaseURL}/v2`,...this.getAuthFields()};return this._httpPost(`/cyndex2/v1/networks/${e}`,void 0,t)}async putCytoscapeNetworkInNDEx(e="current",t){let r={serverUrl:`${this.ndexBaseURL}/v2`,uuid:t,...this.getAuthFields()};return this._httpPut(`/cyndex2/v1/networks/${e}`,void 0,r)}};var Fe="0.6.0-alpha.5";var Le=class{constructor(e={}){this.config={baseURL:"https://www.ndexbio.org",timeout:3e4,retries:3,retryDelay:1e3,debug:false,...e};let t={...this.config.headers,...this.getAuthHeaders()};typeof window>"u"&&(t["User-Agent"]=`NDEx-JS-Client/${Fe}`);let r={headers:t};this.config.baseURL&&(r.baseURL=this.config.baseURL),this.config.timeout&&(r.timeout=this.config.timeout),this.axiosInstance=H.create(r),this.setupInterceptors();}getAuthHeaders(){if(!this.config.auth)return {};if(this.config.auth.type===k.BASIC){let e=`${this.config.auth.username}:${this.config.auth.password}`;return {Authorization:`Basic ${typeof window<"u"&&typeof btoa<"u"?btoa(e):Buffer.from(e,"utf-8").toString("base64")}`}}else if(this.config.auth.type===k.OAUTH)return {Authorization:`Bearer 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globalThis.File)d.append("file",t,t.name);else if(p&&t instanceof globalThis.Blob)d.append("file",t,"file.cx2");else if(typeof t=="string"){let l=new Blob([t],{type:o||"application/json"});d.append("file",l,"file.cx2");}else if(typeof globalThis.Buffer<"u"&&globalThis.Buffer.isBuffer(t)){let l=new Blob([t],{type:o||"application/octet-stream"});d.append("file",l,"file.cx2");}else {let l=new Blob([String(t)],{type:o||"application/octet-stream"});d.append("file",l,"file.cx2");}try{let l={};i&&(l.onUploadProgress=b=>{let f=Math.round(b.loaded*100/(b.total||1));i(f);});let y=await this.axiosInstance.post(c,d,l);return this.handleResponse(y)}catch(l){this.handleError(l);}}setupInterceptors(){this.axiosInstance.interceptors.request.use(e=>(this.config.debug&&console.log("NDEx API Request:",{method:e.method?.toUpperCase(),url:e.url,headers:e.headers}),e),e=>(this.config.debug&&console.error("NDEx API Request Error:",e),Promise.reject(e))),this.axiosInstance.interceptors.response.use(e=>(this.config.debug&&console.log("NDEx API Response:",{status:e.status,url:e.config.url,data:e.data}),e),e=>(this.config.debug&&console.error("NDEx API Response Error:",e.response?.data||e.message),Promise.reject(e)));}handleResponse(e){return e.data&&typeof e.data=="object"&&"errorCode"in e.data&&this.throwNDExError(e.data.message||"Unknown error occurred",e.status,e.data.errorCode||"UNKNOWN_ERROR",e.data.description),e.data&&typeof e.data=="object"&&"data"in e.data?e.data.data:e.data}handleError(e){if(e.response){let t=e.response.data?.message||e.message,r=e.response.data?.errorCode,n=e.response.data?.description;this.throwNDExError(t,e.response.status,r,n);}else throw e.request?new fe("Network error - no response received",e):new A(e.message||"Unknown error occurred",void 0,"CLIENT_ERROR",e.toString())}throwNDExError(e,t,r,n){switch(t){case 400:throw new ge(e,t,r);case 401:case 403:throw new me(e,t,r);case 404:throw new he(e,t,r);case 500:case 502:case 503:case 504:throw new ye(e,t,r);default:throw new A(e,t,r??`HTTP_${t}`,n)}}updateConfig(e){if(this.config={...this.config,...e},e.baseURL&&(this.axiosInstance.defaults.baseURL=e.baseURL),e.timeout&&(this.axiosInstance.defaults.timeout=e.timeout),e.headers&&Object.assign(this.axiosInstance.defaults.headers,e.headers),"auth"in e){let t=this.getAuthHeaders();delete this.axiosInstance.defaults.headers.common.Authorization,Object.assign(this.axiosInstance.defaults.headers.common,t);}}getConfig(){return {...this.config}}getAuthType(){return this.config.auth?.type}getIdToken(){return this.config.auth?.type===k.OAUTH?this.config.auth.idToken:void 0}setIdToken(e){this.updateConfig({auth:{type:k.OAUTH,idToken:e}});}};var Jt=class{constructor(e={}){this.httpService=new Le(e),this.networks=new J(this.httpService),this.files=new K(this.httpService),this.workspace=new G(this.httpService),this.user=new Q(this.httpService),this.admin=new Z;}logout(){this.httpService.updateConfig({});}async getServerStatus(e){let t=new URLSearchParams;e&&t.append("format",e);let r=`admin/status${t.toString()?`?${t.toString()}`:""}`;return this.httpService.get(r)}hasAuthInfo(){let e=this.httpService.getConfig().auth;return e?e.type===k.BASIC?!!e.username&&!!e.password:e.type===k.OAUTH?!!e.idToken:false:false}updateConfig(e){this.httpService.updateConfig(e);}getConfig(){return this.httpService.getConfig()}getAuthType(){return this.httpService.getAuthType()}setIdToken(e){this.httpService.setIdToken(e);}get v2(){return {networks:this.networks.v2}}get v3(){return {networks:this.networks.v3}}},ka=Fe;
+`+i):r.stack=i;}catch{}}throw r}}_request(e,t){typeof e=="string"?(t=t||{},t.url=e):t=e||{},t=P(this.defaults,t);let{transitional:r,paramsSerializer:n,headers:i}=t;r!==void 0&&pe.assertOptions(r,{silentJSONParsing:O.transitional(O.boolean),forcedJSONParsing:O.transitional(O.boolean),clarifyTimeoutError:O.transitional(O.boolean)},false),n!=null&&(a.isFunction(n)?t.paramsSerializer={serialize:n}:pe.assertOptions(n,{encode:O.function,serialize:O.function},true)),t.allowAbsoluteUrls!==void 0||(this.defaults.allowAbsoluteUrls!==void 0?t.allowAbsoluteUrls=this.defaults.allowAbsoluteUrls:t.allowAbsoluteUrls=true),pe.assertOptions(t,{baseUrl:O.spelling("baseURL"),withXsrfToken:O.spelling("withXSRFToken")},true),t.method=(t.method||this.defaults.method||"get").toLowerCase();let o=i&&a.merge(i.common,i[t.method]);i&&a.forEach(["delete","get","head","post","put","patch","common"],f=>{delete i[f];}),t.headers=N.concat(o,i);let c=[],d=true;this.interceptors.request.forEach(function(g){typeof g.runWhen=="function"&&g.runWhen(t)===false||(d=d&&g.synchronous,c.unshift(g.fulfilled,g.rejected));});let u=[];this.interceptors.response.forEach(function(g){u.push(g.fulfilled,g.rejected);});let p,l=0,y;if(!d){let f=[De.bind(this),void 0];for(f.unshift(...c),f.push(...u),y=f.length,p=Promise.resolve(t);l<y;)p=p.then(f[l++],f[l++]);return p}y=c.length;let b=t;for(l=0;l<y;){let f=c[l++],g=c[l++];try{b=f(b);}catch(m){g.call(this,m);break}}try{p=De.call(this,b);}catch(f){return Promise.reject(f)}for(l=0,y=u.length;l<y;)p=p.then(u[l++],u[l++]);return p}getUri(e){e=P(this.defaults,e);let t=ue(e.baseURL,e.url,e.allowAbsoluteUrls);return ne(t,e.params,e.paramsSerializer)}};a.forEach(["delete","get","head","options"],function(e){q.prototype[e]=function(t,r){return this.request(P(r||{},{method:e,url:t,data:(r||{}).data}))};});a.forEach(["post","put","patch"],function(e){function t(r){return function(i,o,c){return this.request(P(c||{},{method:e,headers:r?{"Content-Type":"multipart/form-data"}:{},url:i,data:o}))}}q.prototype[e]=t(),q.prototype[e+"Form"]=t(true);});var de=q;var st=class s{constructor(e){if(typeof e!="function")throw new TypeError("executor must be a function.");let t;this.promise=new Promise(function(i){t=i;});let r=this;this.promise.then(n=>{if(!r._listeners)return;let i=r._listeners.length;for(;i-- >0;)r._listeners[i](n);r._listeners=null;}),this.promise.then=n=>{let i,o=new Promise(c=>{r.subscribe(c),i=c;}).then(n);return o.cancel=function(){r.unsubscribe(i);},o},e(function(i,o,c){r.reason||(r.reason=new D(i,o,c),t(r.reason));});}throwIfRequested(){if(this.reason)throw this.reason}subscribe(e){if(this.reason){e(this.reason);return}this._listeners?this._listeners.push(e):this._listeners=[e];}unsubscribe(e){if(!this._listeners)return;let t=this._listeners.indexOf(e);t!==-1&&this._listeners.splice(t,1);}toAbortSignal(){let e=new AbortController,t=r=>{e.abort(r);};return this.subscribe(t),e.signal.unsubscribe=()=>this.unsubscribe(t),e.signal}static source(){let e;return {token:new s(function(n){e=n;}),cancel:e}}},Ht=st;function nt(s){return function(t){return s.apply(null,t)}}function it(s){return a.isObject(s)&&s.isAxiosError===true}var ot={Continue:100,SwitchingProtocols:101,Processing:102,EarlyHints:103,Ok:200,Created:201,Accepted:202,NonAuthoritativeInformation:203,NoContent:204,ResetContent:205,PartialContent:206,MultiStatus:207,AlreadyReported:208,ImUsed:226,MultipleChoices:300,MovedPermanently:301,Found:302,SeeOther:303,NotModified:304,UseProxy:305,Unused:306,TemporaryRedirect:307,PermanentRedirect:308,BadRequest:400,Unauthorized:401,PaymentRequired:402,Forbidden:403,NotFound:404,MethodNotAllowed:405,NotAcceptable:406,ProxyAuthenticationRequired:407,RequestTimeout:408,Conflict:409,Gone:410,LengthRequired:411,PreconditionFailed:412,PayloadTooLarge:413,UriTooLong:414,UnsupportedMediaType:415,RangeNotSatisfiable:416,ExpectationFailed:417,ImATeapot:418,MisdirectedRequest:421,UnprocessableEntity:422,Locked:423,FailedDependency:424,TooEarly:425,UpgradeRequired:426,PreconditionRequired:428,TooManyRequests:429,RequestHeaderFieldsTooLarge:431,UnavailableForLegalReasons:451,InternalServerError:500,NotImplemented:501,BadGateway:502,ServiceUnavailable:503,GatewayTimeout:504,HttpVersionNotSupported:505,VariantAlsoNegotiates:506,InsufficientStorage:507,LoopDetected:508,NotExtended:510,NetworkAuthenticationRequired:511};Object.entries(ot).forEach(([s,e])=>{ot[e]=s;});var Wt=ot;function zt(s){let e=new de(s),t=Y(de.prototype.request,e);return a.extend(t,de.prototype,e,{allOwnKeys:true}),a.extend(t,e,null,{allOwnKeys:true}),t.create=function(n){return zt(P(s,n))},t}var S=zt(V);S.Axios=de;S.CanceledError=D;S.CancelToken=Ht;S.isCancel=ae;S.VERSION=Oe;S.toFormData=F;S.AxiosError=h;S.Cancel=S.CanceledError;S.all=function(e){return Promise.all(e)};S.spread=nt;S.isAxiosError=it;S.mergeConfig=P;S.AxiosHeaders=N;S.formToJSON=s=>ke(a.isHTMLForm(s)?new FormData(s):s);S.getAdapter=Ae.getAdapter;S.HttpStatusCode=Wt;S.default=S;var H=S;var{Axios:jo,AxiosError:_o,CanceledError:Vo,isCancel:$o,CancelToken:Mo,VERSION:qo,all:Ho,Cancel:Wo,isAxiosError:zo,spread:Jo,toFormData:Ko,AxiosHeaders:Go,HttpStatusCode:Qo,formToJSON:Zo,getAdapter:Yo,mergeConfig:ea}=H;var Ie=class{constructor(e=1234,t){this._port=e,this.cyRestBaseURL=t?.cyRestBaseURL||"http://127.0.0.1",this.ndexBaseURL=t?.ndexBaseURL||"https://www.ndexbio.org",this.axiosInstance=H.create({baseURL:this.cyRestURL(),timeout:3e4,headers:{"Content-Type":"application/json"}});}get port(){return this._port}static get cyRestBaseURL(){return "http://127.0.0.1"}setNDExBaseURL(e){e?.trim()&&(this.ndexBaseURL=e.trim());}getNDExBaseURL(){return this.ndexBaseURL}setBasicAuth(e,t){e?.trim()&&t&&(this.authConfig={type:k.BASIC,username:e.trim(),password:t});}setAuthToken(e){e?.trim()&&(this.authConfig={type:k.OAUTH,idToken:e.trim()});}clearAuth(){delete this.authConfig;}cyRestURL(){return `${this.cyRestBaseURL}:${this._port}`}getAuthFields(){if(!this.authConfig)return {};switch(this.authConfig.type){case k.BASIC:return {username:this.authConfig.username,password:this.authConfig.password};case k.OAUTH:return {idToken:this.authConfig.idToken};default:return {}}}async _httpGet(e){return (await this.axiosInstance.get(e)).data}async _httpPost(e,t,r){return (await this.axiosInstance.post(e,r,{params:t})).data}async _httpPut(e,t,r){return (await this.axiosInstance.put(e,r,{params:t})).data}async getCyNDExStatus(){return this._httpGet("/cyndex2/v1")}async getCytoscapeNetworkSummary(e="current"){return this._httpGet(`/cyndex2/v1/networks/${e}`)}async postNDExNetworkToCytoscape(e,t,r){let n={serverUrl:`${this.ndexBaseURL}/v2`,uuid:e,...this.getAuthFields()};return t!==void 0&&(n.accessKey=t),r!==void 0&&(n.createView=r),this._httpPost("/cyndex2/v1/networks",void 0,n)}async postCXNetworkToCytoscape(e){return this._httpPost("/cyndex2/v1/networks/cx",void 0,e)}async postCX2NetworkToCytoscape(e,t,r){let n={format:"cx2",collection:r,title:t};return this._httpPost("/v1/networks",n,e)}async postCytoscapeNetworkToNDEx(e="current"){let t={serverUrl:`${this.ndexBaseURL}/v2`,...this.getAuthFields()};return this._httpPost(`/cyndex2/v1/networks/${e}`,void 0,t)}async putCytoscapeNetworkInNDEx(e="current",t){let r={serverUrl:`${this.ndexBaseURL}/v2`,uuid:t,...this.getAuthFields()};return this._httpPut(`/cyndex2/v1/networks/${e}`,void 0,r)}};var Fe="0.6.0-alpha.6";var Le=class{constructor(e={}){this.config={baseURL:"https://www.ndexbio.org",timeout:3e4,retries:3,retryDelay:1e3,debug:false,...e};let t={...this.config.headers,...this.getAuthHeaders()};typeof window>"u"&&(t["User-Agent"]=`NDEx-JS-Client/${Fe}`);let r={headers:t};this.config.baseURL&&(r.baseURL=this.config.baseURL),this.config.timeout&&(r.timeout=this.config.timeout),this.axiosInstance=H.create(r),this.setupInterceptors();}getAuthHeaders(){if(!this.config.auth)return {};if(this.config.auth.type===k.BASIC){let e=`${this.config.auth.username}:${this.config.auth.password}`;return {Authorization:`Basic ${typeof window<"u"&&typeof btoa<"u"?btoa(e):Buffer.from(e,"utf-8").toString("base64")}`}}else if(this.config.auth.type===k.OAUTH)return {Authorization:`Bearer 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globalThis.File)d.append("file",t,t.name);else if(p&&t instanceof globalThis.Blob)d.append("file",t,"file.cx2");else if(typeof t=="string"){let l=new Blob([t],{type:o||"application/json"});d.append("file",l,"file.cx2");}else if(typeof globalThis.Buffer<"u"&&globalThis.Buffer.isBuffer(t)){let l=new Blob([t],{type:o||"application/octet-stream"});d.append("file",l,"file.cx2");}else {let l=new Blob([String(t)],{type:o||"application/octet-stream"});d.append("file",l,"file.cx2");}try{let l={};i&&(l.onUploadProgress=b=>{let f=Math.round(b.loaded*100/(b.total||1));i(f);});let y=await this.axiosInstance.post(c,d,l);return this.handleResponse(y)}catch(l){this.handleError(l);}}setupInterceptors(){this.axiosInstance.interceptors.request.use(e=>(this.config.debug&&console.log("NDEx API Request:",{method:e.method?.toUpperCase(),url:e.url,headers:e.headers}),e),e=>(this.config.debug&&console.error("NDEx API Request Error:",e),Promise.reject(e))),this.axiosInstance.interceptors.response.use(e=>(this.config.debug&&console.log("NDEx API Response:",{status:e.status,url:e.config.url,data:e.data}),e),e=>(this.config.debug&&console.error("NDEx API Response Error:",e.response?.data||e.message),Promise.reject(e)));}handleResponse(e){return e.data&&typeof e.data=="object"&&"errorCode"in e.data&&this.throwNDExError(e.data.message||"Unknown error occurred",e.status,e.data.errorCode||"UNKNOWN_ERROR",e.data.description),e.data&&typeof e.data=="object"&&"data"in e.data?e.data.data:e.data}handleError(e){if(e.response){let t=e.response.data?.message||e.message,r=e.response.data?.errorCode,n=e.response.data?.description;this.throwNDExError(t,e.response.status,r,n);}else throw e.request?new fe("Network error - no response received",e):new A(e.message||"Unknown error occurred",void 0,"CLIENT_ERROR",e.toString())}throwNDExError(e,t,r,n){switch(t){case 400:throw new ge(e,t,r);case 401:case 403:throw new me(e,t,r);case 404:throw new he(e,t,r);case 500:case 502:case 503:case 504:throw new ye(e,t,r);default:throw new A(e,t,r??`HTTP_${t}`,n)}}updateConfig(e){if(this.config={...this.config,...e},e.baseURL&&(this.axiosInstance.defaults.baseURL=e.baseURL),e.timeout&&(this.axiosInstance.defaults.timeout=e.timeout),e.headers&&Object.assign(this.axiosInstance.defaults.headers,e.headers),"auth"in e){let t=this.getAuthHeaders();delete this.axiosInstance.defaults.headers.common.Authorization,Object.assign(this.axiosInstance.defaults.headers.common,t);}}getConfig(){return {...this.config}}getAuthType(){return this.config.auth?.type}getIdToken(){return this.config.auth?.type===k.OAUTH?this.config.auth.idToken:void 0}setIdToken(e){this.updateConfig({auth:{type:k.OAUTH,idToken:e}});}};var Jt=class{constructor(e={}){this.httpService=new Le(e),this.networks=new J(this.httpService),this.files=new K(this.httpService),this.workspace=new G(this.httpService),this.user=new Q(this.httpService),this.admin=new Z;}logout(){this.httpService.updateConfig({});}async getServerStatus(e){let t=new URLSearchParams;e&&t.append("format",e);let r=`admin/status${t.toString()?`?${t.toString()}`:""}`;return this.httpService.get(r)}hasAuthInfo(){let e=this.httpService.getConfig().auth;return e?e.type===k.BASIC?!!e.username&&!!e.password:e.type===k.OAUTH?!!e.idToken:false:false}updateConfig(e){this.httpService.updateConfig(e);}getConfig(){return this.httpService.getConfig()}getAuthType(){return this.httpService.getAuthType()}setIdToken(e){this.httpService.setIdToken(e);}get v2(){return {networks:this.networks.v2}}get v3(){return {networks:this.networks.v3}}},ka=Fe;
 exports.AdminService=Z;exports.AuthType=k;exports.CX2Network=B;exports.CXDataType=Ss;exports.CyNDEx=Ie;exports.CyNDExService=Ie;exports.FilesService=K;exports.NDExAuthError=me;exports.NDExClient=Jt;exports.NDExError=A;exports.NDExFileType=ws;exports.NDExNetworkError=fe;exports.NDExNotFoundError=he;exports.NDExServerError=ye;exports.NDExValidationError=ge;exports.NetworkIndexLevel=Zt;exports.NetworkServiceV2=W;exports.NetworkServiceV3=z;exports.Permission=bs;exports.UnifiedNetworkService=J;exports.UserService=Q;exports.VPMappingType=vs;exports.Visibility=ys;exports.WorkspaceService=G;exports.version=ka;return exports;})({});//# sourceMappingURL=index.global.js.map
 //# sourceMappingURL=index.global.js.map