@js4cytoscape/ndex-client 0.6.0-alpha.1 → 0.6.0-alpha.3

package/src/NDEx.js.bak

@@ -1,1107 +0,0 @@
-import { default as axios } from 'axios';
-
-const CX1_HEADER = {
-  numberVerification: [{
-    "longNumber": 283213721732712
-  }]
-};
-
-/**
- * NDEx client class.
- */
-class NDEx {
-    constructor(hostprefix) {
-      if (hostprefix === undefined || hostprefix === null || hostprefix === '') {
-        throw new Error('NDEx server host name or endpoint base URL is required in client constructor.');
-      }
-
-      // axios needs http to be at the front of the url.
-      // Otherwise any request will be redirected to localhost and fail
-      // with an ambiguous reason
-      let httpRegex = new RegExp("^(http|https)://", "i");
-      if (!httpRegex.test(hostprefix)) {
-        // throw new Error(`"http://" or "https://" must be prefixed to the input url: ${hostprefix}`);
-        // we assume it is a host name
-        if ( hostprefix.indexOf('/') > -1 )
-             throw new Error ('"/" are not allowed in host name.');
-         hostprefix = "https://"+ hostprefix + "/v2"; 
-      }
-
-      this._host = hostprefix;
-      this._v3baseURL = this._host.substring(0,this.host.lastIndexOf('v2')) + 'v3';
-    }
-    get host() { return this._host;}
-
-    get googleAuth() {
-      return this._googleAuth;
-    }
-
-    SetGoogleAuth(googleAuthObj) {
-      if (googleAuthObj !== undefined) {
-        this._googleAuth = googleAuthObj;
-        this._authType = 'g'; // valid values are 'g','b' or undefined
-      }
-    }
-
-    setAuthToken(authToken) {
-      if (authToken !== undefined ) {
-        this._authToken = authToken;
-        this._authType = 'g'; // valid values are 'g','b' or undefined
-      }
-    }
-
-    get authenticationType() {
-      return this._authType;
-    }
-
-    get username() {
-      return this._username;
-    }
-
-    // get authStr() { return this._authStr;}
-    get password() { return this._password;}
-
-    setBasicAuth(accountname, password) {
-      if (accountname !== undefined && accountname != null && accountname !== '') {
-        this._username = accountname;
-        this._password = password;
-        this._authType = 'b';
-        // this._authStr = 'Basic ' + btoa(username + ':' + password);
-        return;
-      }
-      this._username = undefined;
-      this._password = undefined;
-      this._authType = undefined;
-      // this._authStr = undefined;
-    }
-
-    _httpGetOpenObj(URL) {
-      let APIEndPointPrefix = this.host ;
-
-      return new Promise(function (resolve, reject) {
-        axios({
-          method: 'get',
-          url: URL,
-          baseURL: APIEndPointPrefix
-        }).then((response) => {
-          if (response.status === 200) {
-            return resolve(response.data);
-          }
-          return reject(response);
-        },
-        (response) =>{return reject(response);}
-        );
-      });
-    }
-
-    // access endpoints that supports authentication
-
-    _getIdToken() {
-      return this._authToken ? this._authToken : this._googleAuth.getAuthInstance().currentUser.get().getAuthResponse().id_token;
-    }
-
-    _setAuthHeader(config) {
-      
-      if (config['headers'] === undefined) {config['headers'] = {};}
-      config['headers']['setAuthHeader'] = false;
-
-      if (this._authType === 'b') {
-        config ['auth'] = { username: this.username,
-          password: this.password};
-      } else if (this.authenticationType === 'g') {
-        config['headers']['Authorization'] = 'Bearer ' + this._getIdToken();
-      }
-    }
-
-    _httpGetProtectedObjAux (prefix, URL, parameters) {
-
-      let config = {
-        method: 'get',
-        url: URL,
-        baseURL: prefix
-      };
-
-      this._setAuthHeader(config);
-
-      if (parameters !== undefined) {
-        config['params'] = parameters;
-      }
-      return new Promise(function (resolve, reject) {
-        axios(config).then((response) => {
-          if (response.status === 200) {
-            return resolve(response.data);
-          }
-          return reject(response);
-        },
-        (response) => {
-          return reject(response);
-        }
-      );
-      });
-    }
-
-    _httpGetV3ProtectedObj(URL, parameters) {
-      return this._httpGetProtectedObjAux(this._v3baseURL, URL, parameters);
-    }
-
-    _httpGetProtectedObj(URL, parameters) {
-      return this._httpGetProtectedObjAux(this.host, URL,parameters);
-    }
-
-    _httpPostProtectedObjAux(prefix,  URL, parameters, data) {
-      let config = {
-        method: 'post',
-        url: URL,
-        baseURL: prefix
-      };
-
-      this._setAuthHeader(config);
-
-      if (parameters !== undefined) {
-        config['params'] = parameters;
-      }
-
-      config.data = data;
-      return new Promise(function (resolve, reject) {
-        axios(config).then((response) => {
-          if (response.status >= 200 && response.status <= 299) {
-            return resolve(response.data);
-          }
-          return reject(response);
-        },
-        (response) => {
-          return reject(response);
-        }
-        );
-      });
-    }
-
-    _httpPostProtectedObj(URL, parameters, data) {
-      return this._httpPostProtectedObjAux(this.host,URL,parameters, data);
-    }
-
-    _httpPostV3ProtectedObj(URL, parameters, data) {
-      return this._httpPostProtectedObjAux(this._v3baseURL,URL,parameters, data);
-    }
-
-    _httpPutObjAux(prefix, URL, parameters, data) {
-      let config = {
-        method: 'put',
-        url: URL,
-        baseURL: prefix
-      };
-
-      this._setAuthHeader(config);
-
-      if (parameters !== undefined) {
-        config['params'] = parameters;
-      }
-
-      config.data = data;
-      return new Promise(function (resolve, reject) {
-        axios(config).then((response) => {
-          if (response.status >= 200 && response.status <= 299) {
-            return resolve(response.data);
-          }
-          return reject(response);
-        },
-        (response) => {
-          return reject(response);
-        }
-        );
-      });
-    }
-
-    _httpPutObj(URL,parameters, data) {
-      return this._httpPutObjAux(this.host,URL, parameters, data);
-    }
-
-    _httpPutV3Obj(URL,parameters,data) {
-      return this._httpPutObjAux(this._v3baseURL,URL,parameters,data);
-    }
-
-
-    _httpDeleteObj(URL, parameters, data) {
-       return this._httpDeleteObjAux(this.host,URL,parameters, data);
-    }
-    
-    _httpDeleteV3Obj(URL, parameters) {
-       return this._httpDeleteObjAux(this._v3baseURL, URL, parameters, undefined);
-    }
-
-    _httpDeleteObjAux(prefix, URL, parameters, data) {
-      let config = {
-        method: 'delete',
-        url: URL,
-        baseURL: prefix
-      };
-
-      this._setAuthHeader(config);
-
-      if (parameters !== undefined) {
-        config['params'] = parameters;
-      }
-
-      if (data !== undefined) {
-        config['data'] = data;
-      }
-
-      return new Promise(function (resolve, reject) {
-        axios(config).then((response) => {
-          if (response.status >= 200 && response.status <= 299) {
-            return resolve(response.data);
-          }
-          return reject(response);
-        },
-        (response) => {
-          return reject(response);
-        }
-        );
-      });
-
-    }
-
-    /* admin functions */
-
-    getStatus() {
-      return this._httpGetOpenObj('admin/status');
-    }
-
-    /* user functions */
-
-    getSignedInUser() {
-      if (this._authType == null) {
-        throw new Error('Authentication parameters are missing in NDEx client.');
-      }
-      return this._httpGetProtectedObj('user', {valid: true});
-    }
-
-    getUser(uuid) {
-      return this._httpGetProtectedObj('user/' + uuid);
-    }
-
-    getAccountPageNetworks(offset, limit) {
-      return new Promise((resolve, reject) => {
-        this.getSignedInUser().then((user) => {
-          let params = {};
-
-          if (offset !== undefined) {
-            params.offset = offset;
-          }
-          if (limit !== undefined) {
-            params.limit = limit;
-          }
-          this._httpGetProtectedObj('/user/' + user.externalId + '/networksummary', params).then(
-            (networkArray) => {resolve(networkArray);}, (err) => {reject(err);}
-          );
-        }, (err) => {reject(err);});
-
-      });
-    }
-
-    getAccountPageNetworksByUUID(uuid, offset, limit) {
-      let params = {};
-
-      if (offset !== undefined) {
-        params.offset = offset;
-      }
-      if (limit !== undefined) {
-        params.limit = limit;
-      }
-      return this._httpGetProtectedObj('user/' + uuid + '/networksummary', params);
-    }
-
-    /* group functions */
-
-    // return the UUID of the created group to the resolver
-    createGroup(group) {
-      return new Promise((resolve, reject)=> {
-        this._httpPostProtectedObj('group', undefined, group).then(
-          (response) => {
-            let uuidr = response.split('/');
-
-            let uuid = uuidr[uuidr.length - 1];
-
-            return resolve(uuid);
-          },
-          (err) => {reject(err);}
-        );
-      });
-    }
-
-    getGroup(uuid) {
-      return this._httpGetProtectedObj('group/' + uuid);
-    }
-
-    updateGroup(group) {
-      return new Promise((resolve, reject)=> {
-        this._httpPutObj('group/' + group.externalId, undefined, group).then(
-          (response) => {
-            return resolve(response);
-          },
-          (err) => {reject(err);}
-        );
-      });
-    }
-
-    deleteGroup(uuid) {
-      return this._httpDeleteObj('group/' + uuid);
-    }
-
-    /* network functions */
-
-    getRawNetwork(uuid, accessKey) {
-
-      let parameters = {};
-
-      if (accessKey !== undefined) {
-        parameters = {accesskey: accessKey};
-      }
-
-      return this._httpGetProtectedObj('network/' + uuid, parameters);
-
-    }
-
-    getCX2Network(uuid, accessKey) {
-
-      let parameters = {};
-
-      if (accessKey !== undefined) {
-        parameters = {accesskey: accessKey};
-      }
-
-      return this._httpGetV3ProtectedObj('networks/' + uuid, parameters);
-
-    }
-
-    getNetworkSummary(uuid, accessKey) {
-      let parameters = {};
-
-      if (accessKey !== undefined) {
-        parameters = {accesskey: accessKey};
-      }
-
-      return this._httpGetProtectedObj('network/' + uuid + '/summary', parameters);
-    }
-
-    getNetworkV3Summary(uuid, accessKey,fmt) {
-      let parameters =  {format:  fmt != null? fmt : "FULL"}
-
-      if (accessKey != null) {
-        parameters ['accesskey'] = accessKey;
-      }
-
-      return this._httpGetV3ProtectedObj('networks/' + uuid + '/summary', parameters);
-    }
-
-    getNetworkDOI(uuid, key, email){
-      return this._httpGetV3ProtectedObj('networks/' + uuid + '/DOI', {key: key, email: email});
-    }
-
-    getAttributesOfSelectedNodes(uuid, {ids: nodeIds, attributeNames: names},accessKey) {
-      let parameters = {
-      };
-
-      if (accessKey != null) {
-        parameters ['accesskey'] = accessKey;
-      }
-
-      let data = {
-        "ids": nodeIds,
-        "attributeNames": names,
-      };
-  
-      return this._httpPostV3ProtectedObj('/search/networks/' + uuid + '/nodes', parameters, data);
-    }
-
-    createNetworkFromRawCX(rawCX, parameters) {
-      return new Promise((resolve, reject) =>{
-        this._httpPostProtectedObj('network', parameters, rawCX).then(
-          (response) => {
-            let uuidr = response.split('/');
-
-            let uuid = uuidr[uuidr.length - 1];
-
-            return resolve(uuid);
-          },
-          (err) => {reject(err);}
-        );
-      });
-    }
-
-    copyNetwork(uuid){
-      return this._httpPostV3ProtectedObj('networks/'+uuid+'/copy', undefined, {});
-    }
-
-    updateNetworkFromRawCX(uuid, rawcx) {
-      return this._httpPutObj('network/' + uuid, undefined, rawcx);
-    }
-
-    deleteNetwork(uuid) {
-      return this._httpDeleteObj('network/' + uuid);
-    }
-
-    /* task functions */
-
-    /* search functions */
-    searchUsers(searchTerms, start, size) {
-      let params = {};
-
-      if (start !== undefined) {
-        params.start = start;
-      }
-      if (size !== undefined) {
-        params.limit = size;
-      }
-      let data = {searchString: searchTerms};
-
-      return this._httpPostProtectedObj('search/user', params, data);
-
-    }
-
-    searchGroups(searchTerms, start, size) {
-      let params = {};
-
-      if (start !== undefined) {
-        params.start = start;
-      }
-      if (size !== undefined) {
-        params.limit = size;
-      }
-      let data = {searchString: searchTerms};
-
-      return this._httpPostProtectedObj('search/group', params, data);
-
-    }
-
-    searchNetworks(searchTerms, start, size, optionalParameters) {
-      let params = {};
-
-      if (start !== undefined) {
-        params.start = start;
-      }
-      if (size !== undefined) {
-        params.limit = size;
-      }
-
-      let data = {searchString: searchTerms};
-
-      if (optionalParameters !== undefined) {
-        if (optionalParameters.permission !== undefined) {
-          data.permission = optionalParameters.permission;
-        }
-        if (optionalParameters.includeGroups !== undefined) {
-          data.includeGroups = optionalParameters.includeGroups;
-        }
-        if (optionalParameters.accountName !== undefined) {
-          data.accountName = optionalParameters.accountName;
-        }
-      }
-
-      return this._httpPostProtectedObj('search/network', params, data);
-    }
-
-    neighborhoodQuery(uuid, searchTerms, saveResult, parameters, outputCX2 = false) {
-      let params = {};
-
-      if (saveResult !== undefined && saveResult === true) {params.save = true;}
-
-      let data = {searchString: searchTerms,
-        searchDepth: 1};
-
-      if (parameters !== undefined) {
-        if (parameters.searchDepth !== undefined) {
-          data.searchDepth = parameters.searchDepth;
-        }
-        if (parameters.edgeLimit !== undefined) {
-          data.edgeLimit = parameters.edgeLimit;
-        }
-        if (parameters.errorWhenLimitIsOver !== undefined) {
-          data.errorWhenLimitIsOver = parameters.errorWhenLimitIsOver;
-        }
-        if (parameters.directOnly !== undefined) {
-          data.directOnly = parameters.directOnly;
-        }
-        if ( parameters.nodeIds !=null) {
-          data.nodeIds = parameters.nodeIds;
-        } 
-      }
-      if( outputCX2)
-        return this._httpPostV3ProtectedObj('search/network/' + uuid + '/query', params, data);
-
-      return this._httpPostProtectedObj('search/network/' + uuid + '/query', params, data);
-
-    }
-
-    interConnectQuery(uuid, searchTerms, saveResult, parameters, outputCX2 = false) {
-      let params = {};
-
-      if (saveResult !== undefined && saveResult === true) {params.save = true;}
-
-      let data = {searchString: searchTerms};
-
-      if (parameters !== undefined) {
-        if (parameters.edgeLimit !== undefined) {
-          data.edgeLimit = parameters.edgeLimit;
-        }
-        if (parameters.errorWhenLimitIsOver !== undefined) {
-          data.errorWhenLimitIsOver = parameters.errorWhenLimitIsOver;
-        }
-        if ( parameters.nodeIds !=null) {
-          data.nodeIds = parameters.nodeIds;
-        }
-      }
-      if (outputCX2)
-         return this._httpPostV3ProtectedObj('search/networks/' + uuid + '/interconnectquery', params, data);
-         
-      return this._httpPostProtectedObj('search/network/' + uuid + '/interconnectquery', params, data);
-
-    }
-
-    /* batch functions */
-    getUsersByUUIDs(uuidList) {
-      return this._httpPostProtectedObj('batch/user', undefined, uuidList);
-    }
-
-    getGroupsByUUIDs(uuidList) {
-      return this._httpPostProtectedObj('batch/group', undefined, uuidList);
-    }
-
-    getNetworkSummariesByUUIDs(uuidList, accessKey) {
-      let parameter = accessKey === undefined ? undefined :
-        {accesskey: accessKey};
-
-      return this._httpPostProtectedObj('batch/network/summary', parameter, uuidList);
-    }
-
-    getNetworkSummariesV3ByUUIDs(uuidList, accessKey,fmt) {
-      let parameter =  {format:  fmt == undefined ? "FULL" : fmt}
-
-      if(accessKey != null) 
-        parameter['accesskey']= accessKey;
-
-      return this._httpPostV3ProtectedObj('batch/networks/summary', parameter, uuidList);
-    }
-
-
-    getNetworkPermissionsByUUIDs(uuidList) {
-      return this._httpPostProtectedObj('batch/network/permission', undefined, uuidList);
-    }
-
-    exportNetworks(exportJob) {
-      return this._httpPostProtectedObj('batch/network/export', undefined, exportJob);
-    }
-
-    moveNetworks(networkIds, folderId){
-      if(Object.isArray(networkIds)){
-        return this._httpPostV3ProtectedObj('batch/networks/move', undefined, {targetFolder:folderId, networks: networkIds});
-      }else{
-        throw new Error('Invalid networkIds');
-      }
-    }
-
-    setNetworksVisibility(files, visibility){
-      if(this._validateShareData(files)){ 
-        return this._httpPostV3ProtectedObj('batch/networks/visibility', undefined, {items: files, visibility: visibility});
-      }else{
-        throw new Error('Invalid share data');
-      }
-    }
-
-    /* network set functions */
-    createNetworkSet({name, description}){
-      return new Promise((resolve, reject)=> {
-        this._httpPostProtectedObj('networkset', undefined, {name, description}).then(
-          (response) => {
-            let uuidr = response.split('/');
-
-            let uuid = uuidr[uuidr.length - 1];
-
-            return resolve(uuid);
-          },
-          (err) => {reject(err);}
-        );
-      });
-    }
-
-    updateNetworkSet(uuid, {name, description}){
-      return new Promise((resolve, reject)=> {
-        this._httpPutObj('networkset/' + uuid, undefined, {uuid, name, description}).then(
-          (response) => {
-            return resolve(response);
-          },
-          (err) => {reject(err);}
-        );
-      });
-    }
-
-    deleteNetworkSet(uuid){
-      return this._httpDeleteObj('networkset/' + uuid);
-    }
-
-    getNetworkSet(uuid, accessKey){
-      let parameters = {};
-
-      if (accessKey !== undefined) {
-        parameters = {accesskey: accessKey};
-      }
-
-      return this._httpGetProtectedObj('networkset/' + uuid, parameters);
-    }
-
-    addToNetworkSet(networkSetUUID, networkUUIDs){
-      return this._httpPostProtectedObj('networkset/' + networkSetUUID + '/members', undefined, networkUUIDs);
-    }
-
-    deleteFromNetworkSet(networkSetUUID, networkUUIDS){
-      return this._httpDeleteObj('networkset/' + networkSetUUID + '/members', undefined, networkUUIDS);
-    }
-
-    updateNetworkSetSystemProperty(networksetUUID, data){
-      return this._httpPutObj('networkset/' + networksetUUID + '/systemproperty', undefined, data);
-    }
-
-
-    /* undocumented functions. Might be changed ... */
-
-    // layout update is a list of objects:
-    // [{ node: 1, x: 100, y: 100}, {node: 2, x: 1003, y: 200 }...]
-    updateCartesianLayoutAspect(uuid, nodePositions){
-
-      // 1. get node coordinates from cy.js model in the format of cartesian aspect
-      // 2. generate CX for the put request
-      // 3. example
-      // [{
-      //   "numberVerification": [
-      //     {
-      //       "longNumber": 283213721732712
-      //     }
-      //   ]
-      // }, {
-      //   "metaData": [{
-      //     "name": "cartesianLayout", "elementCount": 100 // num nodes here
-      //   }],
-      //   "cartesianLayout": [{
-      //       "node": 100, "x": 23213.12, "y": 3234.5
-      //     }]
-      //   }]
-      const cartesianLayoutUpdate = [
-        CX1_HEADER,
-        {
-          metaData: [{
-            name: 'cartesianLayout',
-            elementCount: nodePositions.length
-          }]
-        },
-        {
-          cartesianLayout: nodePositions
-        },
-        {
-          status: [{
-            error: '',
-            success: true
-          }]
-        }
-      ]
-
-      return this._httpPutObj(`network/${uuid}/aspects`, undefined, cartesianLayoutUpdate);
-    }
-
-    // new v3 functions
-    getRandomEdges(uuid, limit, accessKey ) {
-
-      if ( limit <=0)
-        throw new Error("Value of parameter limit has to be greater than 0.");
-
-      let parameters = {
-        size: limit,
-        method: "random"
-      };
-
-      if (accessKey !== undefined) {
-      parameters = {accesskey: accessKey};
-      }
-
-      return this._httpGetV3ProtectedObj('networks/' + uuid + '/aspects/edges', parameters);
-    }
-
-    getMetaData(uuid, accessKey) {
-      let parameters = {
-      };
-
-      if (accessKey !== undefined) {
-        parameters ['accesskey'] =accessKey;
-      }
-
-      return this._httpGetProtectedObj('network/' + uuid + '/aspect', parameters);
-    }
-
-    getAspectElements(uuid, aspectName, limit, accessKey ) {
-
-      let parameters = {
-      };
-
-      if ( limit !== undefined) {
-        parameters = {
-          size: limit
-        };
-      }
-
-      if (accessKey !== undefined) {
-        parameters ['accesskey'] =accessKey;
-      }
-
-      return this._httpGetV3ProtectedObj('networks/' + uuid + '/aspects/' + aspectName, parameters);
-    }
-
-  getFilteredEdges(uuid, columnName, valueString, operator, limit, order, format, accessKey ) {
-
-    let parameters = {
-    };
-
-
-    if ( limit !== undefined) {
-      parameters = {
-        size: limit
-      };
-    }
-
-    if ( order !== undefined) {
-      parameters['order'] = order;
-    }
-
-    if (accessKey !== undefined) {
-      parameters ['accesskey'] = accessKey;
-    }
-
-    if ( format !== undefined ) {
-      parameters['format'] = format;
-    }
-
-    let data = {
-      "name": columnName,
-      "value": valueString,
-      "operator": operator
-    };
-
-    return this._httpPostV3ProtectedObj('/search/networks/' + uuid + '/edges', parameters, data);
-  }
-
-  getCX2MetaData(uuid, accessKey ) {
-
-    let parameters = {
-    };
-
-    if (accessKey !== undefined) {
-      parameters ['accesskey'] =accessKey;
-    }
-
-    return this._httpGetV3ProtectedObj('networks/' + uuid + '/aspects', parameters);
-  }
-
-  cancelDOIRequest(uuid) {
-    const cancelBody =
-      {type: "Cancel_DOI", networkId: uuid}
-    ;
-
-    return this._httpPostProtectedObj('admin/request', {}, cancelBody);
-  }
-
-
-  // unstable function to upload CX2 to NDEx
-  createNetworkFromRawCX2(rawCX2, makePublic = false) {
-    let config = {
-      method: 'post',
-      url: 'networks',
-      baseURL: this._v3baseURL,
-      params: {
-        visibility: makePublic ? 'PUBLIC' : 'PRIVATE'
-      }
-    };
-
-    this._setAuthHeader(config);
-    config.data = rawCX2;
-
-    return axios(config).then(res => {
-      let { location } = res.headers;
-      let uuid = location.split('/').pop();
-
-      return { uuid };
-    });
-  }
-
-  updateNetworkFromRawCX2(uuid, rawCX2) {
-    return this._httpPutV3Obj('networks/'+uuid, undefined, rawCX2);
-  }
-
-  createCyWebWorkspace(workspace) {
-    return new Promise((resolve, reject)=> {
-      this._httpPostV3ProtectedObj('workspaces', undefined, workspace).then(
-        (response) => {
-         // let uuidr = response.split('/');
-
-         // let uuid = uuidr[uuidr.length - 1];
-
-          return resolve(response);
-        },
-        (err) => {reject(err);}
-      );
-    });
-
-  }
-
-  getCyWebWorkspace(workspaceId) {
-    return this._httpGetV3ProtectedObj('workspaces/'+ workspaceId, {});
-    }
-
-  deleteCyWebWorkspace(workspaceId) {
-    return this._httpDeleteV3Obj('workspaces/'+ workspaceId, undefined);
-  }
-
-  updateCyWebWorkspace(workspaceId, workspaceObj) {
-    return this._httpPutV3Obj('workspaces/'+workspaceId, undefined, workspaceObj);
-  }
-
-  updateCyWebWorkspaceName(workspaceId, newName) {
-    return this._httpPutV3Obj('workspaces/'+workspaceId+'/name', undefined, {'name': newName});
-  }
-
-  updateCyWebWorkspaceNetworks(workspaceId, networkIds) {
-    return this._httpPutV3Obj('workspaces/'+workspaceId+'/networkids', undefined, networkIds);
-  }
-
-  getUserCyWebWorkspaces() {
-    return new Promise((resolve, reject) => {
-      this.getSignedInUser().then((user) => {
-        this._httpGetV3ProtectedObj('users/'+ user.externalId + '/workspaces', {}).then(
-          (workspaceArray) => {resolve(workspaceArray);}, (err) => {reject(err);}
-        );
-      }, (err) => {reject(err);});
-
-    });
-  }
-
-  signInFromIdToken(idToken) {
-   return this._httpPostV3ProtectedObj('users/signin', undefined, {idToken: idToken});
-  }
-
-  // Permission and AccessKey APIs
-
-  //Todo:permission APIs
-
-  getAccessKey(uuid){
-    return this._httpGetProtectedObj('networks/'+uuid+'/accesskey', {});
-  }
-
-  updateAccessKey(uuid, action){
-    return this._httpPutObj('networks/'+uuid+'/accesskey', {action: action});
-  }
-
-  // V3-Files APIs
-  copyFile(fromUuid, toPath, type, accessKey) {
-    let parameters = {};
-
-    if (accessKey !== undefined) {
-      parameters ['accesskey'] = accessKey;
-    }
-    return this._httpPostV3ProtectedObj('files/copy', parameters, {from_uuid: fromUuid, type: type, to_path: toPath,});
-  }
-
-  getCount() {
-    return this._httpGetV3ProtectedObj('files/count', {});
-  }
-
-  getTrash(){
-    return this._httpGetV3ProtectedObj('files/trash', {});
-  }
-
-  emptyTrash() {
-    return this._httpDeleteV3Obj('files/trash', undefined);
-  }
-
-  permanentlyDeleteFile(fileId) {
-    return this._httpDeleteV3Obj('files/trash/'+fileId, undefined);
-  }
-
-  restoreFile(networkIds, folderIds, shortcutIds) {
-    return this._httpPostV3ProtectedObj('files/trash/restore', undefined, {networks: networkIds, folders: folderIds, shortcuts: shortcutIds});
-  }
-  // Sharing  
-  //add, remove, update member
-  _validateShareData(data) {
-    // Check if data is an object and has files property
-    if (typeof data !== 'object' || data === null || data.files === undefined) {
-      throw new Error('Data must be an object with a "files" property');
-    }
-    
-    // Check if files is an object
-    if (typeof data.files !== 'object' || data.files === null) {
-      throw new Error('The "files" property must be an object');
-    }
-    
-    // Check each key-value pair in files
-    const validValues = ['NETWORK', 'FOLDER', 'SHORTCUT'];
-    
-    for (const [uuid, fileType] of Object.entries(data.files)) {
-      // Validate UUID format (basic validation)
-      if (!/^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i.test(uuid)) {
-        throw new Error(`Invalid UUID format: ${uuid}`);
-      }
-      
-      // Validate file type
-      if (!validValues.includes(fileType)) {
-        throw new Error(`Invalid file type for ${uuid}: ${fileType}. Must be one of: ${validValues.join(', ')}`);
-      }
-    }
-  }
-  _validateMemberData(data){
-    if(typeof data !== 'object' || data === null || data.members === undefined){
-      throw new Error('Data must be an object with a "members" property');
-    }
-    const validValues = ['READ', 'WRITE'];
-    for (const [uuid, permission] of Object.entries(data.members)) {
-      if (!validValues.includes(permission)) {
-        throw new Error(`Invalid permission for ${uuid}: ${permission}. Must be one of: ${validValues.join(', ')}`);
-      }
-      if(typeof uuid !== 'string' || !/^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i.test(uuid)){
-        throw new Error(`Invalid UUID format: ${uuid}`);
-      }
-    }
-    
-  }
-
-  updateMember(files, members){
-    if(this._validateShareData(files) && this._validateMemberData(members)){
-      return this._httpPostV3ProtectedObj('files/sharing/members', undefined, {files: files, members: members});
-    }else{
-      throw new Error('Invalid share data');
-    }
-  }
-
-  listMembers(files){
-    return this._httpGetV3ProtectedObj('files/sharing/members/list', files);
-  }
-
-
-
-  transferOwnership(files, newOwner){
-    if(this._validateShareData(files)){
-      return this._httpPostV3ProtectedObj('files/sharing/transfer_ownership', undefined, {files: files, new_owner: newOwner});
-    } else {
-      throw new Error('Invalid share data');
-    }
-  }
-
-  listShares(limit){
-    let parameters = {};
-    if(limit !== undefined){
-      parameters['limit'] = limit;
-    }
-    return this._httpPostV3ProtectedObj('files/sharing/list', parameters);
-  }
-  
-  share(files){
-    if(this._validateShareData(files)){
-      return this._httpPostV3ProtectedObj('files/sharing/share', undefined, {files: files});
-    }else{
-      throw new Error('Invalid share data');
-    }
-  }
-
-  unshare(files){
-    if(this._validateShareData(files)){
-      return this._httpPostV3ProtectedObj('files/sharing/unshare', undefined, {files: files});
-    }else{
-      throw new Error('Invalid share data');
-    }
-  }
-
-  // Folder
-  getFolders(limit){
-    let parameters = {};
-
-    if (limit !== undefined) {
-      parameters ['limit'] = limit;
-    }
-    return this._httpGetV3ProtectedObj('files/folders', parameters);
-  }
-  
-  createFolder(name, parentFolderId) {
-    return this._httpPostV3ProtectedObj('files/folders', undefined, {name: name, parent: parentFolderId});
-  }
-
-  getFolder(folderId, accessKey) {
-    let parameters = {};
-
-    if (accessKey !== undefined) {
-      parameters ['accesskey'] = accessKey;
-    }
-    return this._httpGetV3ProtectedObj('files/folders/' + folderId, parameters);
-  }
-
-  updateFolder(folderId, name, parentFolderId) {
-    return this._httpPutV3Obj('files/folders/' + folderId, undefined, {name: name, parent: parentFolderId});
-  }
-
-  deleteFolder(folderId) {
-    return this._httpDeleteV3Obj('files/folders/' + folderId, undefined);
-  }
-
-  getFolderCount(folderId, accessKey) {
-    let parameters = {};
-
-    if (accessKey !== undefined) {
-      parameters ['accesskey'] = accessKey;
-    }
-    return this._httpGetV3ProtectedObj('files/folders/' + folderId + '/count', parameters);
-  }
-
-  getFolderList(folderId, accessKey, format, type) {
-    let parameters = {};
-
-    if (accessKey !== undefined) {
-      parameters ['accesskey'] = accessKey;
-    }
-    if (format !== undefined) {
-      parameters['format'] = format;
-    }
-    if (type !== undefined) {
-      parameters['type'] = type;
-    }
-    return this._httpGetV3ProtectedObj('files/folders/' + folderId + '/list', parameters);
-  }
-
-  // Sortcut
-  getShortcuts(limit){
-    let parameters = {};
-
-    if (limit !== undefined) {
-      parameters ['limit'] = limit;
-    }
-    return this._httpGetV3ProtectedObj('files/shortcuts', parameters);
-  }
-
-  createShortcut(name, parentFolderId, targetId, tagetType) {
-    return this._httpPostV3ProtectedObj('files/shortcuts', undefined, {name: name, parent: parentFolderId, target: targetId, targetType: tagetType});
-  }
-
-  getShortcut(shortcutId, accessKey) {
-    let parameters = {};
-
-    if (accessKey !== undefined) {
-      parameters ['accesskey'] = accessKey;
-    }
-    return this._httpGetV3ProtectedObj('files/shortcuts/' + shortcutId, parameters);
-  }
-  
-  updateShortcut(shortcutId, name, parentFolderId, targetId, tagetType) {
-    return this._httpPutV3Obj('files/shortcuts/' + shortcutId, undefined, {name: name, parent: parentFolderId, target: targetId, targetType: tagetType});
-  }
-
-  delteShortcut(shortcutId) {
-    return this._httpDeleteV3Obj('files/shortcuts/' + shortcutId, undefined);
-  }
-
-}
-
-export default  NDEx;