@js4cytoscape/ndex-client 0.6.0-alpha.1 → 0.6.0-alpha.2

package/dist/index.d.ts

@@ -463,6 +463,14 @@ interface AccessKeyResponse {
  * Valid actions for updating access keys
  */
 declare type AccessKeyAction = 'enable' | 'disable';
+/**
+ * NDEx object update status - returned from network creation and update operations
+ * Corresponds to server-side NdexObjectUpdateStatus class
+ */
+interface NDExObjectUpdateStatus {
+    uuid: string;
+    modificationTime: number;
+}
 
 /**
  * HTTPService - Core HTTP client for NDEx API communication
@@ -470,6 +478,7 @@ declare type AccessKeyAction = 'enable' | 'disable';
  *
  * @note User-Agent header is set to 'NDEx-JS-Client/${version}' but only works in Node.js.
  *       Browsers will ignore custom User-Agent headers for security reasons.
+ * @internal
  */
 declare class HTTPService {
     private axiosInstance;
@@ -507,67 +516,7 @@ declare class HTTPService {
     delete<T = any>(endpoint: string, config?: AxiosRequestConfig & {
         version?: 'v2' | 'v3';
     }): Promise<T>;
-    /**
-     * Upload a file to the NDEx API with progress tracking support
-     *
-     * This method handles file uploads using multipart/form-data encoding and supports
-     * various input types for maximum flexibility across different environments.
-     *
-     * @template T - The expected response type from the API
-     * @param endpoint - API endpoint path (e.g., 'networks' for network upload)
-     * @param file - File data to upload. Supports multiple input types:
-     *   - `File` (browser): HTML5 File object from file input or drag-and-drop
-     *   - `Blob` (browser): Binary data as Blob object
-     *   - `Buffer` (Node.js): Binary data as Buffer for server-side uploads
-     *   - `string`: Text content that will be converted to Blob (useful for CX/CX2 JSON)
-     * @param options - Upload configuration options
-     * @param options.filename - Custom filename for the upload. Defaults:
-     *   - File objects: uses `file.name`
-     *   - Other types: 'file.cx2'
-     * @param options.contentType - MIME type for string content (default: 'application/json')
-     * @param options.onProgress - Progress callback that receives percentage (0-100)
-     *   Called periodically during upload with current progress
-     * @param options.version - API version to use ('v2' or 'v3', defaults to 'v2')
-     * @param options.config - Additional Axios configuration options
-     *
-     * @returns Promise resolving to upload result
-     *
-     * @example
-     * ```typescript
-     * // Upload a File object from file input (browser)
-     * const fileInput = document.getElementById('file') as HTMLInputElement;
-     * const file = fileInput.files[0];
-     * const result = await httpService.uploadFile('networks', file, {
-     *   filename: 'my-network.cx2',
-     *   onProgress: (progress) => console.log(`Upload: ${progress}%`),
-     *   version: 'v3'
-     * });
-     *
-     * // Upload CX2 network data as string
-     * const cx2Data = JSON.stringify({ CXVersion: '2.0', networks: [...] });
-     * const result = await httpService.uploadFile('networks', cx2Data, {
-     *   filename: 'network.cx2',
-     *   contentType: 'application/json',
-     *   version: 'v3'
-     * });
-     *
-     * // Upload with progress tracking
-     * const result = await httpService.uploadFile('networks', file, {
-     *   onProgress: (progress) => {
-     *     progressBar.style.width = `${progress}%`;
-     *     console.log(`Uploading: ${progress}%`);
-     *   }
-     * });
-     * ```
-     *
-     * @throws Will throw NDExError on network errors,
-     *         server errors, or invalid file data
-     *
-     * @note The Content-Type header is automatically set to 'multipart/form-data'
-     *       and Axios will handle the boundary parameter automatically
-     */
     uploadFile<T = any>(endpoint: string, file: File | Blob | Buffer | string, options?: {
-        filename?: string;
         contentType?: string;
         onProgress?: (progress: number) => void;
         version?: 'v2' | 'v3';
@@ -818,14 +767,12 @@ declare class NetworkServiceV3 {
      */
     createNetworkFromCX2(cx2Data: CX2Network$1 | CX2Network, options?: {
         visibility?: 'PUBLIC' | 'PRIVATE';
-        name?: string;
-    }): Promise<{
-        uuid: string;
-    }>;
+        folderId?: string;
+    }): Promise<NDExObjectUpdateStatus>;
     /**
      * Update network with CX2 data
      */
-    updateNetworkCX2(networkUUID: string, cx2Data: CX2Network$1 | CX2Network): Promise<void>;
+    updateNetworkCX2(networkUUID: string, cx2Data: CX2Network$1 | CX2Network): Promise<NDExObjectUpdateStatus>;
     /**
      * Upload network file (CX2, CX, or other formats)
      */
@@ -1303,28 +1250,33 @@ declare class UnifiedNetworkService {
     /**
      * Create network from raw CX2 data (migrated from original NDEx.js)
      *
-     * Creates a new network in NDEx from raw CX2 network data. This is an unstable function
-     * for uploading CX2 format networks directly to NDEx using the V3 API. The function
-     * extracts the network UUID from the response location header.
+     * Creates a new network on NDEx from raw CX2 data using the V3 API.
+     * This function delegates to the NetworkServiceV3 implementation.
      *
-     * @param rawCX2 - Raw CX2 network data as an object or CX2Network instance
-     * @param makePublic - Whether to make the network public (default: false = private)
-     * @returns Promise resolving to an object containing the UUID of the created network
+     * @param cx2Data - Raw CX2 network data as an object or CX2Network instance
+     * @param options - Creation options including visibility and folderId
+     * @param options.visibility - Network visibility: 'PUBLIC' or 'PRIVATE' (default: 'PRIVATE')
+     * @param options.folderId - UUID of the folder to create the network in. If omitted, network is created in user's home directory
+     * @returns Promise resolving to NDExObjectUpdateStatus with uuid and modificationTime
      *
      * @example
      * ```typescript
-     * // Create private network from raw CX2 data
+     * // Create private network from raw CX2 data in user's home directory
      * const result = await client.networks.createNetworkFromRawCX2(cx2Data);
      * console.log(result.uuid); // "12345678-1234-1234-1234-123456789abc"
      *
-     * // Create public network from raw CX2 data
-     * const publicResult = await client.networks.createNetworkFromRawCX2(cx2Data, true);
+     * // Create public network from raw CX2 data in a specific folder
+     * const publicResult = await client.networks.createNetworkFromRawCX2(cx2Data, {
+     *   visibility: 'PUBLIC',
+     *   folderId: '87654321-4321-4321-4321-876543210fed'
+     * });
      * console.log(publicResult.uuid);
      * ```
      */
-    createNetworkFromRawCX2(rawCX2: CX2Network$1 | any, makePublic?: boolean): Promise<{
-        uuid: string;
-    }>;
+    createNetworkFromRawCX2(cx2Data: CX2Network$1 | CX2Network, options?: {
+        visibility?: 'PUBLIC' | 'PRIVATE';
+        folderId?: string;
+    }): Promise<NDExObjectUpdateStatus>;
     /**
      * Update network from raw CX2 data (migrated from original NDEx.js)
      *
@@ -1926,6 +1878,29 @@ declare class NDExClient {
         networks: NetworkServiceV3;
     };
 }
+/**
+ * Library version string imported from package.json
+ *
+ * Provides programmatic access to the current library version for:
+ * - Runtime version checking and validation
+ * - Debugging and error reporting
+ * - Logging and telemetry
+ * - Version-dependent feature detection
+ *
+ * @example
+ * ```typescript
+ * import { NDExClient, version } from '@js4cytoscape/ndex-client';
+ *
+ * console.log(`Using NDEx Client v${version}`);
+ *
+ * // In error reports
+ * const errorReport = {
+ *   error: err.message,
+ *   libraryVersion: version,
+ *   timestamp: new Date().toISOString()
+ * };
+ * ```
+ */
 declare const version: string;
 
-export { type APIError, type APIResponse, type AccessKeyAction, type AccessKeyResponse, type AccessParams, AdminService, type BasicAuth, type CX1Edge, type CX1MetaDataItem, type CX1MetaDataResponse, type CX1NetworkProperty, type CX2AttributeDeclarations, type CX2AttributeSpec, type CX2Edge, type CX2EdgeBypass, type CX2ImportParams, type CX2MetaData, CX2Network, type CX2NetworkAttribute, type CX2NetworkProperties, type CX2Node, type CX2NodeBypass, type CX2Status, type CX2VisualProperty, CyNDExService as CyNDEx, type CyNDExAuthConfig, type CyNDExConfig, CyNDExService, type CyNDExStatusResponse, type CyWebWorkspace, type CytoscapeNetworkSummary, type DefaultVisualProperties, type ExportFormat, type ExportRequest, FilesService, HTTPService, type MappingDefinition, type NDExAny, NDExAuthError, type NDExAuthResponse, NDExClient, type NDExClientConfig, NDExError, type NDExExportParams, type NDExImportParams, NDExNetworkError, NDExNotFoundError, NDExServerError, type NDExUser, NDExValidationError, NetworkIndexLevel, type NetworkPermission, NetworkServiceV2, NetworkServiceV3, type NetworkSummaryV2, type NetworkSummaryV3, type OAuthAuth, type PaginationParams, type SearchParameters, type SearchResult, type TableColumnVisualStyle, type Task, type Timestamp, type UUID, UnifiedNetworkService, UserService, type VPMappingType, type VisualPropertyMapping, type VisualPropertyTable, WorkspaceService, version };
+export { type APIError, type APIResponse, type AccessKeyAction, type AccessKeyResponse, type AccessParams, AdminService, type BasicAuth, type CX1Edge, type CX1MetaDataItem, type CX1MetaDataResponse, type CX1NetworkProperty, type CX2AttributeDeclarations, type CX2AttributeSpec, type CX2Edge, type CX2EdgeBypass, type CX2ImportParams, type CX2MetaData, CX2Network, type CX2NetworkAttribute, type CX2NetworkProperties, type CX2Node, type CX2NodeBypass, type CX2Status, type CX2VisualProperty, CyNDExService as CyNDEx, type CyNDExAuthConfig, type CyNDExConfig, CyNDExService, type CyNDExStatusResponse, type CyWebWorkspace, type CytoscapeNetworkSummary, type DefaultVisualProperties, type ExportFormat, type ExportRequest, FilesService, type MappingDefinition, type NDExAny, NDExAuthError, type NDExAuthResponse, NDExClient, type NDExClientConfig, NDExError, type NDExExportParams, type NDExImportParams, NDExNetworkError, NDExNotFoundError, type NDExObjectUpdateStatus, NDExServerError, type NDExUser, NDExValidationError, NetworkIndexLevel, type NetworkPermission, NetworkServiceV2, NetworkServiceV3, type NetworkSummaryV2, type NetworkSummaryV3, type OAuthAuth, type PaginationParams, type SearchParameters, type SearchResult, type TableColumnVisualStyle, type Task, type Timestamp, type UUID, UnifiedNetworkService, UserService, type VPMappingType, type VisualPropertyMapping, type VisualPropertyTable, WorkspaceService, version };

package/dist/index.global.js

@@ -1,9 +1,9 @@
 var NDExClient=(function(exports){'use strict';/* NDEx Client Library - Browser Build with Axios */
-var Wt=Object.defineProperty;var zt=(s,e)=>{for(var t in e)Wt(s,t,{get:e[t],enumerable:true});};var Jt=(r=>(r.NONE="NONE",r.BASIC="BASIC",r.FULL="FULL",r))(Jt||{}),A=class extends Error{constructor(t,r,n,i){super(t);this.statusCode=r;this.errorCode=n;this.description=i;this.name="NDExError";}},fe=class extends A{constructor(t,r){super(t,void 0,"NETWORK_ERROR");this.originalError=r;this.name="NDExNetworkError";}},me=class extends A{constructor(e="Authentication failed",t=401){super(e,t,"AUTH_ERROR"),this.name="NDExAuthError";}},he=class extends A{constructor(e="Resource not found",t=404){super(e,t,"NOT_FOUND"),this.name="NDExNotFoundError";}},ge=class extends A{constructor(e,t=400){super(e,t,"VALIDATION_ERROR"),this.name="NDExValidationError";}},ye=class extends A{constructor(e="Internal server error",t=500){super(e,t,"SERVER_ERROR"),this.name="NDExServerError";}};var F=class s{constructor(e){this.CXVersion="2.0";this.hasFragments=false;this.metaData=[];e&&Object.assign(this,e),this.ensureRequiredMetadata();}static createEmpty(){let e=new s;return e.nodes=[],e.edges=[],e.metaData=[{name:"nodes",elementCount:0},{name:"edges",elementCount:0}],e}static fromJSON(e){let t=typeof e=="string"?JSON.parse(e):e;return new s(t)}static fromNetworkSummary(e){let t=s.createEmpty();return t.networkAttributes=[{name:e.name},...e.description?[{description:e.description}]:[],...e.version?[{version:e.version}]:[]],e.properties&&Object.entries(e.properties).forEach(([r,n])=>{t.networkAttributes?.push({[r]:n.v});}),t}addNode(e,t){this.nodes||(this.nodes=[]);let r={id:e};return t&&(r.v=t),this.nodes.push(r),this.updateNodeCount(),r}addEdge(e,t,r,n){this.edges||(this.edges=[]);let i={id:e,s:t,t:r};return n&&(i.v=n),this.edges.push(i),this.updateEdgeCount(),i}addNodeAttribute(e,t,r){let n=this.nodes.find(i=>i.id===e);n&&(n.v||(n.v={}),n.v[t]=r);}addEdgeAttribute(e,t,r){let 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this.config.auth?.type}getIdToken(){return this.config.auth?.type==="oauth"?this.config.auth.idToken:void 0}setIdToken(e){this.updateConfig({auth:{type:"oauth",idToken:e}});}};var ie=class{constructor(e){this.http=e;}async getRawCX1Network(e,t={}){let r=new URLSearchParams;t.accesskey&&r.append("accesskey",t.accesskey);let n=`network/${e}${r.toString()?`?${r.toString()}`:""}`;return this.http.get(n,{version:"v2",headers:{Accept:"application/json"}})}async getNetworkSummary(e,t={}){let r=new URLSearchParams;t.accesskey&&r.append("accesskey",t.accesskey);let n=`network/${e}/summary${r.toString()?`?${r.toString()}`:""}`;return this.http.get(n,{version:"v2"})}async copyNetwork(e){let t=`network/${e}/copy`;return this.http.post(t,{},{version:"v2"})}async searchNetworks(e,t,r,n){let i={};t!==void 0&&(i.start=t.toString()),r!==void 0&&(i.limit=r.toString());let o={searchString:e};return n!==void 0&&(n.permission!==void 0&&(o.permission=n.permission),n.includeGroups!==void 0&&(o.includeGroups=n.includeGroups),n.accountName!==void 0&&(o.accountName=n.accountName)),this.http.post("search/network",o,{version:"v2",params:i})}async createNetworkFromRawCX1(e,t={}){let i=(await this.http.post("network",e,{version:"v2",params:t})).split("/");return i[i.length-1]}async updateNetworkFromRawCX1(e,t){let r=`network/${e}`;return this.http.put(r,t,{version:"v2"})}async deleteNetwork(e){let t=`network/${e}`;return this.http.delete(t,{version:"v2"})}async getNetworkSummariesByUUIDs(e,t){let r=t?{accesskey:t}:void 0;return this.http.post("batch/network/summary",e,{version:"v2",params:r})}async getUserNetworks(e,t={}){let r=new URLSearchParams;t.start!==void 0&&r.append("start",t.start.toString()),t.size!==void 0&&r.append("size",t.size.toString());let n=`user/${e}/networks${r.toString()?`?${r.toString()}`:""}`;return this.http.get(n,{version:"v2"})}async setNetworkSystemProperties(e,t){let r=`networks/${e}/systemproperty`;return this.http.put(r,t,{version:"v2"})}async getNetworkPermissions(e){let t=`networks/${e}/permission`;return this.http.get(t,{version:"v2"})}async setNetworkPermissions(e,t){let r=`networks/${e}/permission`;return this.http.put(r,t,{version:"v2"})}async grantNetworkPermission(e,t,r){let n=`networks/${e}/permission`,i={memberUUID:t,permission:r};return this.http.post(n,i,{version:"v2"})}async revokeNetworkPermission(e,t){let r=`networks/${e}/permission`;return this.http.delete(r,{version:"v2",data:{memberUUID:t}})}async getNetworkProfile(e){let t=`networks/${e}/profile`;return this.http.get(t,{version:"v2"})}async setNetworkProfile(e,t){let r=`networks/${e}/profile`;return this.http.put(r,t,{version:"v2"})}async makeNetworkPublic(e){let t=`networks/${e}/systemproperty`,r={visibility:"PUBLIC"};return this.http.put(t,r,{version:"v2"})}async makeNetworkPrivate(e){let t=`networks/${e}/systemproperty`,r={visibility:"PRIVATE"};return this.http.put(t,r,{version:"v2"})}async getNetworkSample(e,t={}){let r=new URLSearchParams;t.accesskey&&r.append("accesskey",t.accesskey);let n=`networks/${e}/sample${r.toString()?`?${r.toString()}`:""}`;return this.http.get(n,{version:"v2"})}async getMetaData(e,t){let r=new URLSearchParams;t!==void 0&&r.append("accesskey",t);let n=`network/${e}/aspect${r.toString()?`?${r.toString()}`:""}`;return this.http.get(n,{version:"v2"})}async getAccessKey(e){let t=`networks/${e}/accesskey`;return this.http.get(t,{version:"v2"})}async updateAccessKey(e,t){let r=`networks/${e}/accesskey`;return this.http.put(r,{action:t},{version:"v2"})}};var oe=class{constructor(e){this.http=e;}async getNetworkSummary(e,t={}){let r=new URLSearchParams;t.accesskey&&r.append("accesskey",t.accesskey);let n=`networks/${e}/summary${r.toString()?`?${r.toString()}`:""}`;return this.http.get(n,{version:"v3"})}async getRawCX2Network(e,t={}){let r=new URLSearchParams;t.accesskey&&r.append("accesskey",t.accesskey);let n=`networks/${e}${r.toString()?`?${r.toString()}`:""}`;return this.http.get(n,{version:"v3"})}async createNetworkDOI(e,t,r){let n=new URLSearchParams;n.append("key",t),n.append("email",r);let i=`networks/${e}/DOI?${n.toString()}`;return this.http.get(i,{version:"v3"})}async getAttributesOfSelectedNodes(e,t,r={}){let n=new URLSearchParams;r.accesskey&&n.append("accesskey",r.accesskey);let i={ids:t.ids,attributeNames:t.attributeNames},o=`search/networks/${e}/nodes${n.toString()?`?${n.toString()}`:""}`;return this.http.post(o,i,{version:"v3"})}async getNetworkSummariesV3ByUUIDs(e,t,r){let n={format:r===void 0?"FULL":r};return t!=null&&(n.accesskey=t),this.http.post("batch/networks/summary",e,{version:"v3",params:n})}async searchNetworks(e={}){let t=new URLSearchParams;e.searchString&&t.append("searchString",e.searchString),e.accountName&&t.append("accountName",e.accountName),e.permission&&t.append("permission",e.permission),e.includeGroups!==void 0&&t.append("includeGroups",e.includeGroups.toString()),e.admin&&t.append("admin",e.admin),e.start!==void 0&&t.append("start",e.start.toString()),e.size!==void 0&&t.append("size",e.size.toString()),e.source&&t.append("source",e.source);let r=`search/network${t.toString()?`?${t.toString()}`:""}`;return this.http.get(r,{version:"v3"})}async getNetworkAsCX2Object(e,t={}){let r=await this.getRawCX2Network(e,t);return new F(r)}async createNetworkFromCX2(e,t={}){let r="networks/cx2",n=e instanceof F?JSON.parse(e.toJSON()):e;return this.http.post(r,n,{version:"v3",params:t})}async updateNetworkCX2(e,t){let r=`networks/${e}/cx2`,n=t instanceof F?JSON.parse(t.toJSON()):t;return this.http.put(r,n,{version:"v3"})}async uploadNetworkFile(e,t={}){return this.http.uploadFile("networks/upload",e,{version:"v3",...t})}async getNetworkMetadata(e){let t=`networks/${e}/metadata`;return this.http.get(t,{version:"v3"})}async updateNetworkMetadata(e,t){let r=`networks/${e}/metadata`;return this.http.put(r,t,{version:"v3"})}async getNetworkAspect(e,t,r={}){let n=new URLSearchParams;r.accesskey&&n.append("accesskey",r.accesskey);let i=`networks/${e}/aspects/${t}${n.toString()?`?${n.toString()}`:""}`;return this.http.get(i,{version:"v3"})}};var ae=class{constructor(e){this.http=e;this.v2Service=new ie(e),this.v3Service=new oe(e);}async getNetworkSummary(e,t={}){return this.v3Service.getNetworkSummary(e,t)}async getRawCX1Network(e,t={}){return this.v2Service.getRawCX1Network(e,t)}async getRawCX2Network(e,t={}){return this.v3Service.getRawCX2Network(e,t)}async deleteNetwork(e){return this.v2Service.deleteNetwork(e)}async createNetworkDOI(e,t,r){return this.v3Service.createNetworkDOI(e,t,r)}async getAttributesOfSelectedNodes(e,t,r={}){return this.v3Service.getAttributesOfSelectedNodes(e,t,r)}async neighborhoodQuery(e,t,r,n,i=false){let o={};r!==void 0&&r===true&&(o.save="true");let c={searchString:t,searchDepth:1};if(n!==void 0&&(n.searchDepth!==void 0&&(c.searchDepth=n.searchDepth),n.edgeLimit!==void 0&&(c.edgeLimit=n.edgeLimit),n.errorWhenLimitIsOver!==void 0&&(c.errorWhenLimitIsOver=n.errorWhenLimitIsOver),n.directOnly!==void 0&&(c.directOnly=n.directOnly),n.nodeIds!=null&&(c.nodeIds=n.nodeIds)),i){let u=`search/network/${e}/query`;return this.http.post(u,c,{version:"v3",params:o})}let d=`search/network/${e}/query`;return this.http.post(d,c,{version:"v2",params:o})}async interConnectQuery(e,t,r,n,i=false){let o={};r!==void 0&&r===true&&(o.save="true");let c={searchString:t};if(n!==void 0&&(n.edgeLimit!==void 0&&(c.edgeLimit=n.edgeLimit),n.errorWhenLimitIsOver!==void 0&&(c.errorWhenLimitIsOver=n.errorWhenLimitIsOver),n.nodeIds!=null&&(c.nodeIds=n.nodeIds)),i){let u=`search/networks/${e}/interconnectquery`;return this.http.post(u,c,{version:"v3",params:o})}let d=`search/network/${e}/interconnectquery`;return this.http.post(d,c,{version:"v2",params:o})}async getNetworkPermissionsByUUIDs(e){return this.http.post("batch/network/permission",e,{version:"v2"})}async exportNetworks(e){return this.http.post("batch/network/export",e,{version:"v2"})}async moveNetworks(e,t){if(!Array.isArray(e))throw new Error("Invalid networkIds - must be an array");let r="batch/networks/move",n={targetFolder:t,networks:e};return this.http.post(r,n,{version:"v3"})}async setNetworksVisibility(e,t){this.validateShareData(e);let r="batch/networks/visibility",n={items:e,visibility:t};return this.http.post(r,n,{version:"v3"})}async getRandomEdges(e,t,r){if(t<=0)throw new Error("Value of parameter limit has to be greater than 0.");let n={size:t.toString(),method:"random"};r!==void 0&&(n.accesskey=r);let i=`networks/${e}/aspects/edges`;return this.http.get(i,{version:"v3",params:n})}validateShareData(e){if(typeof e!="object"||e===null||e.files===void 0)throw new Error('Data must be an object with a "files" property');if(typeof e.files!="object"||e.files===null)throw new Error('The "files" property must be an object');let t=["NETWORK","FOLDER","SHORTCUT"];for(let[r,n]of Object.entries(e.files)){if(!/^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i.test(r))throw new Error(`Invalid UUID format: ${r}`);if(!t.includes(n))throw new Error(`Invalid file type for ${r}: ${n}. Must be one of: ${t.join(", ")}`)}}async getAspectElements(e,t,r,n){let i={};r!==void 0&&(i.size=r.toString()),n!==void 0&&(i.accesskey=n);let o=`networks/${e}/aspects/${t}`;return this.http.get(o,{version:"v3",params:i})}async getFilteredEdges(e,t,r,n,i,o,c,d){let u={};i!==void 0&&(u.size=i.toString()),o!==void 0&&(u.order=o),d!==void 0&&(u.accesskey=d),c!==void 0&&(u.format=c);let p={name:t,value:r,operator:n},l=`search/networks/${e}/edges`;return this.http.post(l,p,{version:"v3",params:u})}async getCX2MetaData(e,t){let r={};t!==void 0&&(r.accesskey=t);let n=`networks/${e}/aspects`;return this.http.get(n,{version:"v3",params:r})}async createNetworkFromRawCX2(e,t=false){let r={visibility:t?"PUBLIC":"PRIVATE"},o=(await this.http.post("networks",e,{version:"v3",params:r})).split("/").pop();if(!o)throw new Error("Failed to extract network UUID from response");return {uuid:o}}async updateNetworkFromRawCX2(e,t){let r=`networks/${e}`;return this.http.put(r,t,{version:"v3"})}get v2(){return this.v2Service}get v3(){return this.v3Service}};var ce=class{constructor(e){this.http=e;}copyFile(e,t,r,n){let i={};return n!==void 0&&(i.accesskey=n),this.http.post("files/copy",{from_uuid:e,type:r,to_path:t},{params:i,version:"v3"})}getCount(){return this.http.get("files/count",{version:"v3"})}getTrash(){return this.http.get("files/trash",{version:"v3"})}emptyTrash(){return this.http.delete("files/trash",{version:"v3"})}permanentlyDeleteFile(e){return this.http.delete(`files/trash/${e}`,{version:"v3"})}restoreFile(e,t,r){return this.http.post("files/trash/restore",{networks:e,folders:t,shortcuts:r},{version:"v3"})}_validateShareData(e){if(typeof e!="object"||e===null||e.files===void 0)throw new Error('Data must be an object with a "files" property');if(typeof e.files!="object"||e.files===null)throw new Error('The "files" property must be an object');let t=["NETWORK","FOLDER","SHORTCUT"];for(let[r,n]of Object.entries(e.files)){if(!/^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i.test(r))throw new Error(`Invalid UUID format: ${r}`);if(!t.includes(n))throw new Error(`Invalid file type for ${r}: ${n}. Must be one of: ${t.join(", ")}`)}}_validateMemberData(e){if(typeof e!="object"||e===null||e.members===void 0)throw new Error('Data must be an object with a "members" property');let t=["READ","WRITE"];for(let[r,n]of Object.entries(e.members)){if(!t.includes(n))throw new Error(`Invalid permission for ${r}: ${n}. Must be one of: ${t.join(", ")}`);if(typeof r!="string"||!/^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i.test(r))throw new Error(`Invalid UUID format: ${r}`)}}updateMember(e,t){return this._validateShareData({files:e}),this._validateMemberData({members:t}),this.http.post("files/sharing/members",{files:e,members:t},{version:"v3"})}listMembers(e){return this.http.get("files/sharing/members/list",{params:e,version:"v3"})}transferOwnership(e,t){return this._validateShareData({files:e}),this.http.post("files/sharing/transfer_ownership",{files:e,new_owner:t},{version:"v3"})}listShares(e){let t={};return e!==void 0&&(t.limit=e),this.http.post("files/sharing/list",t,{version:"v3"})}share(e){return this._validateShareData({files:e}),this.http.post("files/sharing/share",{files:e},{version:"v3"})}unshare(e){return this._validateShareData({files:e}),this.http.post("files/sharing/unshare",{files:e},{version:"v3"})}getFolders(e){let t={};return e!==void 0&&(t.limit=e),this.http.get("files/folders",{params:t,version:"v3"})}createFolder(e,t){return this.http.post("files/folders",{name:e,parent:t},{version:"v3"})}getFolder(e,t){let r={};return t!==void 0&&(r.accesskey=t),this.http.get(`files/folders/${e}`,{params:r,version:"v3"})}updateFolder(e,t,r){return this.http.put(`files/folders/${e}`,{name:t,parent:r},{version:"v3"})}deleteFolder(e){return this.http.delete(`files/folders/${e}`,{version:"v3"})}getFolderCount(e,t){let r={};return t!==void 0&&(r.accesskey=t),this.http.get(`files/folders/${e}/count`,{params:r,version:"v3"})}getFolderList(e,t,r,n){let i={};return t!==void 0&&(i.accesskey=t),r!==void 0&&(i.format=r),n!==void 0&&(i.type=n),this.http.get(`files/folders/${e}/list`,{params:i,version:"v3"})}getShortcuts(e){let t={};return e!==void 0&&(t.limit=e),this.http.get("files/shortcuts",{params:t,version:"v3"})}createShortcut(e,t,r,n){return this.http.post("files/shortcuts",{name:e,parent:t,target:r,targetType:n},{version:"v3"})}getShortcut(e,t){let r={};return t!==void 0&&(r.accesskey=t),this.http.get(`files/shortcuts/${e}`,{params:r,version:"v3"})}updateShortcut(e,t,r,n,i){return this.http.put(`files/shortcuts/${e}`,{name:t,parent:r,target:n,targetType:i},{version:"v3"})}deleteShortcut(e){return this.http.delete(`files/shortcuts/${e}`,{version:"v3"})}};var ue=class{constructor(e){this.http=e;}async createCyWebWorkspace(e){return this.http.post("workspaces",e,{version:"v3"})}async getCyWebWorkspace(e){let t=`workspaces/${e}`;return this.http.get(t,{version:"v3"})}async deleteCyWebWorkspace(e){let t=`workspaces/${e}`;return this.http.delete(t,{version:"v3"})}async updateCyWebWorkspace(e,t){let r=`workspaces/${e}`;return this.http.put(r,t,{version:"v3"})}async updateCyWebWorkspaceName(e,t){let r=`workspaces/${e}/name`;return this.http.put(r,{name:t},{version:"v3"})}async updateCyWebWorkspaceNetworks(e,t){let r=`workspaces/${e}/networkids`;return this.http.put(r,t,{version:"v3"})}async getUserCyWebWorkspaces(){let t=`users/${(await this.http.get("user",{params:{valid:true}})).externalId}/workspaces`;return this.http.get(t,{version:"v3"})}};var pe=class{constructor(e){this.http=e;}async authenticate(){let e=this.http.getAuthType();if(!e)throw new Error("Authentication parameters are missing in NDEx client.");if(e==="basic"){let t="user",r={valid:true};return this.http.get(t,{params:r})}else if(e==="oauth"){let t=this.http.getIdToken();if(!t)throw new Error("OAuth ID token is missing.");let r="users/signin",n={idToken:t};return this.http.post(r,n,{version:"v3"})}throw new Error(`Unsupported authentication type: ${e}`)}async getCurrentUser(){if(!this.http.getAuthType())throw new Error("Authentication parameters are missing in NDEx client.");let t="user",r={valid:true};return this.http.get(t,{params:r})}async updateCurrentUser(e){if(!e.externalId)throw new Error("User uuid is required in userUpdate object");let t=`user/${e.externalId}`;return this.http.put(t,e)}async requestPasswordReset(e){return this.http.post("user/forgot-password",{email:e})}async resetPassword(e,t){let r=`user/${e}/password`,n={headers:{"Content-Type":"text/plain"}};return this.http.put(r,t,n)}async getUser(e){let t=`user/${e}`;return this.http.get(t)}async getUserByNameOrEmail(e){let t=new URLSearchParams;"username"in e?t.append("username",e.username):"email"in e&&t.append("email",e.email);let r=`user?${t.toString()}`;return this.http.get(r)}async getUsersByUUIDs(e){return this.http.post("batch/user",e)}async searchUsers(e,t,r){let n={};t!==void 0&&(n.start=t.toString()),r!==void 0&&(n.limit=r.toString());let i={searchString:e};return this.http.post("search/user",i,{params:n})}async getAccountPageNetworks(e,t,r){let n={};t!==void 0&&(n.offset=t.toString()),r!==void 0&&(n.limit=r.toString());let i=`user/${e}/networksummary`;return this.http.get(i,{params:n})}async deleteUserAccount(e){let t=`user/${e}`;return this.http.delete(t)}};var de=class{constructor(e){this.http=e;}};var Le=class{constructor(e=1234,t){this._port=e,this.cyRestBaseURL=t?.cyRestBaseURL||"http://127.0.0.1",this.ndexBaseURL=t?.ndexBaseURL||"https://www.ndexbio.org",this.axiosInstance=q.create({baseURL:this.cyRestURL(),timeout:3e4,headers:{"Content-Type":"application/json"}});}get port(){return this._port}static get cyRestBaseURL(){return "http://127.0.0.1"}setNDExBaseURL(e){e?.trim()&&(this.ndexBaseURL=e.trim());}getNDExBaseURL(){return this.ndexBaseURL}setBasicAuth(e,t){e?.trim()&&t&&(this.authConfig={type:"basic",username:e.trim(),password:t});}setAuthToken(e){e?.trim()&&(this.authConfig={type:"oauth",idToken:e.trim()});}clearAuth(){this.authConfig=void 0;}cyRestURL(){return `${this.cyRestBaseURL}:${this._port}`}getAuthFields(){if(!this.authConfig)return {};switch(this.authConfig.type){case "basic":return {username:this.authConfig.username,password:this.authConfig.password};case "oauth":return {idToken:this.authConfig.idToken};default:return {}}}async _httpGet(e){return (await this.axiosInstance.get(e)).data}async _httpPost(e,t,r){return (await this.axiosInstance.post(e,r,{params:t})).data}async _httpPut(e,t,r){return (await this.axiosInstance.put(e,r,{params:t})).data}async getCyNDExStatus(){return this._httpGet("/cyndex2/v1")}async getCytoscapeNetworkSummary(e="current"){return this._httpGet(`/cyndex2/v1/networks/${e}`)}async postNDExNetworkToCytoscape(e,t,r){let n={serverUrl:`${this.ndexBaseURL}/v2`,uuid:e,accessKey:t,createView:r,...this.getAuthFields()};return this._httpPost("/cyndex2/v1/networks",void 0,n)}async postCXNetworkToCytoscape(e){return this._httpPost("/cyndex2/v1/networks/cx",void 0,e)}async postCX2NetworkToCytoscape(e,t,r){let n={format:"cx2",collection:r,title:t};return this._httpPost("/v1/networks",n,e)}async postCytoscapeNetworkToNDEx(e="current"){let t={serverUrl:`${this.ndexBaseURL}/v2`,...this.getAuthFields()};return this._httpPost(`/cyndex2/v1/networks/${e}`,void 0,t)}async putCytoscapeNetworkInNDEx(e="current",t){let r={serverUrl:`${this.ndexBaseURL}/v2`,uuid:t,...this.getAuthFields()};return this._httpPut(`/cyndex2/v1/networks/${e}`,void 0,r)}};var Ht=class{constructor(e={}){this.httpService=new ne(e),this.networks=new ae(this.httpService),this.files=new ce(this.httpService),this.workspace=new ue(this.httpService),this.user=new pe(this.httpService),this.admin=new de(this.httpService);}logout(){this.httpService.updateConfig({auth:void 0});}async getServerStatus(e){let t=new URLSearchParams;e&&t.append("format",e);let r=`admin/status${t.toString()?`?${t.toString()}`:""}`;return this.httpService.get(r)}hasAuthInfo(){let e=this.httpService.getConfig().auth;return e?e.type==="basic"?!!e.username&&!!e.password:e.type==="oauth"?!!e.idToken:false:false}updateConfig(e){this.httpService.updateConfig(e);}getConfig(){return this.httpService.getConfig()}get http(){return this.httpService}get v2(){return {networks:this.networks.v2}}get v3(){return {networks:this.networks.v3}}},fa=Ie;
-exports.AdminService=de;exports.CX2Network=F;exports.CyNDEx=Le;exports.CyNDExService=Le;exports.FilesService=ce;exports.HTTPService=ne;exports.NDExAuthError=me;exports.NDExClient=Ht;exports.NDExError=A;exports.NDExNetworkError=fe;exports.NDExNotFoundError=he;exports.NDExServerError=ye;exports.NDExValidationError=ge;exports.NetworkIndexLevel=Jt;exports.NetworkServiceV2=ie;exports.NetworkServiceV3=oe;exports.UnifiedNetworkService=ae;exports.UserService=pe;exports.WorkspaceService=ue;exports.version=fa;return exports;})({});//# sourceMappingURL=index.global.js.map
+var Wt=Object.defineProperty;var zt=(s,e)=>{for(var t in e)Wt(s,t,{get:e[t],enumerable:true});};var Jt=(r=>(r.NONE="NONE",r.BASIC="BASIC",r.FULL="FULL",r))(Jt||{}),A=class extends Error{constructor(t,r,n,i){super(t);this.statusCode=r;this.errorCode=n;this.description=i;this.name="NDExError";}},le=class extends A{constructor(t,r){super(t,void 0,"NETWORK_ERROR");this.originalError=r;this.name="NDExNetworkError";}},fe=class extends A{constructor(e="Authentication failed",t=401){super(e,t,"AUTH_ERROR"),this.name="NDExAuthError";}},me=class extends A{constructor(e="Resource not found",t=404){super(e,t,"NOT_FOUND"),this.name="NDExNotFoundError";}},he=class extends A{constructor(e,t=400){super(e,t,"VALIDATION_ERROR"),this.name="NDExValidationError";}},ge=class extends A{constructor(e="Internal server error",t=500){super(e,t,"SERVER_ERROR"),this.name="NDExServerError";}};var F=class s{constructor(e){this.CXVersion="2.0";this.hasFragments=false;this.metaData=[];e&&Object.assign(this,e),this.ensureRequiredMetadata();}static createEmpty(){let e=new s;return e.nodes=[],e.edges=[],e.metaData=[{name:"nodes",elementCount:0},{name:"edges",elementCount:0}],e}static fromJSON(e){let t=typeof e=="string"?JSON.parse(e):e;return new s(t)}static fromNetworkSummary(e){let t=s.createEmpty();return t.networkAttributes=[{name:e.name},...e.description?[{description:e.description}]:[],...e.version?[{version:e.version}]:[]],e.properties&&Object.entries(e.properties).forEach(([r,n])=>{t.networkAttributes?.push({[r]:n.v});}),t}addNode(e,t){this.nodes||(this.nodes=[]);let r={id:e};return t&&(r.v=t),this.nodes.push(r),this.updateNodeCount(),r}addEdge(e,t,r,n){this.edges||(this.edges=[]);let i={id:e,s:t,t:r};return n&&(i.v=n),this.edges.push(i),this.updateEdgeCount(),i}addNodeAttribute(e,t,r){let n=this.nodes.find(i=>i.id===e);n&&(n.v||(n.v={}),n.v[t]=r);}addEdgeAttribute(e,t,r){let n=this.edges.find(i=>i.id===e);n&&(n.v||(n.v={}),n.v[t]=r);}setNodeCoordinates(e,t,r,n){this.nodes||(this.nodes=[]);let i=this.nodes.find(o=>o.id===e);i||(i={id:e},this.nodes.push(i),this.updateNodeCount()),i.x=t,i.y=r,n!==void 0&&(i.z=n);}getNode(e){return this.nodes?.find(t=>t.id===e)}getEdge(e){return this.edges?.find(t=>t.id===e)}getNodes(){return this.nodes||[]}getEdges(){return this.edges||[]}getNodeCount(){return this.nodes?.length||0}getEdgeCount(){return this.edges?.length||0}getNetworkName(){return this.networkAttributes?.find(e=>"name"in e)?.name}setNetworkName(e){this.networkAttributes||(this.networkAttributes=[]),this.networkAttributes=this.networkAttributes.filter(t=>!("name"in t)),this.networkAttributes.push({name:e});}getNetworkAttribute(e){return this.networkAttributes?.find(t=>e in t)?.[e]}setNetworkAttribute(e,t){this.networkAttributes||(this.networkAttributes=[]),this.networkAttributes=this.networkAttributes.filter(r=>!(e in r)),this.networkAttributes.push({[e]:t});}validate(){let e=[];return this.CXVersion||e.push("CXVersion is required"),this.hasFragments===void 0&&e.push("hasFragments is required"),(!this.metaData||this.metaData.length===0)&&e.push("metaData is required and must not be empty"),this.metaData?.forEach((t,r)=>{t.name||e.push(`metaData[${r}] is missing required 'name' field`);}),this.nodes&&this.nodes.forEach((t,r)=>{(t.id===void 0||t.id===null)&&e.push(`nodes[${r}] is missing required 'id' field`);}),this.edges&&this.edges.forEach((t,r)=>{if((t.id===void 0||t.id===null)&&e.push(`edges[${r}] is missing required 'id' field`),(t.s===void 0||t.s===null)&&e.push(`edges[${r}] is missing required 's' (source) field`),(t.t===void 0||t.t===null)&&e.push(`edges[${r}] is missing required 't' (target) field`),this.nodes&&t.s!==void 0&&t.t!==void 0){let n=this.nodes.some(o=>o.id===t.s),i=this.nodes.some(o=>o.id===t.t);n||e.push(`edges[${r}] references non-existent source node ${t.s}`),i||e.push(`edges[${r}] references non-existent target node ${t.t}`);}}),{isValid:e.length===0,errors:e}}toJSON(){return JSON.stringify(this,null,2)}clone(){return new s(JSON.parse(this.toJSON()))}getStatistics(){return {nodeCount:this.getNodeCount(),edgeCount:this.getEdgeCount(),hasCoordinates:!!(this.nodes&&this.nodes.some(e=>e.x!==void 0||e.y!==void 0||e.z!==void 0)),hasVisualProperties:!!(this.visualProperties&&(this.visualProperties.default||this.visualProperties.edgeMapping||this.visualProperties.nodeMapping))}}ensureRequiredMetadata(){this.metaData||(this.metaData=[]),this.nodes&&!this.metaData.find(e=>e.name==="nodes")&&this.metaData.push({name:"nodes",elementCount:this.nodes.length}),this.edges&&!this.metaData.find(e=>e.name==="edges")&&this.metaData.push({name:"edges",elementCount:this.edges.length});}updateNodeCount(){let e=this.metaData?.find(t=>t.name==="nodes");e&&(e.elementCount=this.nodes?.length||0);}updateEdgeCount(){let e=this.metaData?.find(t=>t.name==="edges");e&&(e.elementCount=this.edges?.length||0);}};var H=class{constructor(e){this.http=e;}async getRawCX1Network(e,t={}){let r=new URLSearchParams;t.accesskey&&r.append("accesskey",t.accesskey);let n=`network/${e}${r.toString()?`?${r.toString()}`:""}`;return this.http.get(n,{version:"v2",headers:{Accept:"application/json"}})}async getNetworkSummary(e,t={}){let r=new URLSearchParams;t.accesskey&&r.append("accesskey",t.accesskey);let n=`network/${e}/summary${r.toString()?`?${r.toString()}`:""}`;return this.http.get(n,{version:"v2"})}async copyNetwork(e){let t=`network/${e}/copy`;return this.http.post(t,{},{version:"v2"})}async searchNetworks(e,t,r,n){let i={};t!==void 0&&(i.start=t.toString()),r!==void 0&&(i.limit=r.toString());let o={searchString:e};return n!==void 0&&(n.permission!==void 0&&(o.permission=n.permission),n.includeGroups!==void 0&&(o.includeGroups=n.includeGroups),n.accountName!==void 0&&(o.accountName=n.accountName)),this.http.post("search/network",o,{version:"v2",params:i})}async createNetworkFromRawCX1(e,t={}){let i=(await this.http.post("network",e,{version:"v2",params:t})).split("/");return i[i.length-1]}async updateNetworkFromRawCX1(e,t){let r=`network/${e}`;return this.http.put(r,t,{version:"v2"})}async deleteNetwork(e){let t=`network/${e}`;return this.http.delete(t,{version:"v2"})}async getNetworkSummariesByUUIDs(e,t){let r=t?{accesskey:t}:void 0;return this.http.post("batch/network/summary",e,{version:"v2",params:r})}async getUserNetworks(e,t={}){let r=new URLSearchParams;t.start!==void 0&&r.append("start",t.start.toString()),t.size!==void 0&&r.append("size",t.size.toString());let n=`user/${e}/networks${r.toString()?`?${r.toString()}`:""}`;return this.http.get(n,{version:"v2"})}async setNetworkSystemProperties(e,t){let r=`networks/${e}/systemproperty`;return this.http.put(r,t,{version:"v2"})}async getNetworkPermissions(e){let t=`networks/${e}/permission`;return this.http.get(t,{version:"v2"})}async setNetworkPermissions(e,t){let r=`networks/${e}/permission`;return this.http.put(r,t,{version:"v2"})}async grantNetworkPermission(e,t,r){let n=`networks/${e}/permission`,i={memberUUID:t,permission:r};return this.http.post(n,i,{version:"v2"})}async revokeNetworkPermission(e,t){let r=`networks/${e}/permission`;return this.http.delete(r,{version:"v2",data:{memberUUID:t}})}async getNetworkProfile(e){let t=`networks/${e}/profile`;return this.http.get(t,{version:"v2"})}async setNetworkProfile(e,t){let r=`networks/${e}/profile`;return this.http.put(r,t,{version:"v2"})}async makeNetworkPublic(e){let t=`networks/${e}/systemproperty`,r={visibility:"PUBLIC"};return this.http.put(t,r,{version:"v2"})}async makeNetworkPrivate(e){let t=`networks/${e}/systemproperty`,r={visibility:"PRIVATE"};return this.http.put(t,r,{version:"v2"})}async getNetworkSample(e,t={}){let r=new URLSearchParams;t.accesskey&&r.append("accesskey",t.accesskey);let n=`networks/${e}/sample${r.toString()?`?${r.toString()}`:""}`;return this.http.get(n,{version:"v2"})}async getMetaData(e,t){let r=new URLSearchParams;t!==void 0&&r.append("accesskey",t);let n=`network/${e}/aspect${r.toString()?`?${r.toString()}`:""}`;return this.http.get(n,{version:"v2"})}async getAccessKey(e){let t=`networks/${e}/accesskey`;return this.http.get(t,{version:"v2"})}async updateAccessKey(e,t){let r=`networks/${e}/accesskey`;return this.http.put(r,{action:t},{version:"v2"})}};var W=class{constructor(e){this.http=e;}async getNetworkSummary(e,t={}){let r=new URLSearchParams;t.accesskey&&r.append("accesskey",t.accesskey);let n=`networks/${e}/summary${r.toString()?`?${r.toString()}`:""}`;return this.http.get(n,{version:"v3"})}async getRawCX2Network(e,t={}){let r=new URLSearchParams;t.accesskey&&r.append("accesskey",t.accesskey);let n=`networks/${e}${r.toString()?`?${r.toString()}`:""}`;return this.http.get(n,{version:"v3"})}async createNetworkDOI(e,t,r){let n=new URLSearchParams;n.append("key",t),n.append("email",r);let i=`networks/${e}/DOI?${n.toString()}`;return this.http.get(i,{version:"v3"})}async getAttributesOfSelectedNodes(e,t,r={}){let n=new URLSearchParams;r.accesskey&&n.append("accesskey",r.accesskey);let i={ids:t.ids,attributeNames:t.attributeNames},o=`search/networks/${e}/nodes${n.toString()?`?${n.toString()}`:""}`;return this.http.post(o,i,{version:"v3"})}async getNetworkSummariesV3ByUUIDs(e,t,r){let n={format:r===void 0?"FULL":r};return t!=null&&(n.accesskey=t),this.http.post("batch/networks/summary",e,{version:"v3",params:n})}async searchNetworks(e={}){let t=new URLSearchParams;e.searchString&&t.append("searchString",e.searchString),e.accountName&&t.append("accountName",e.accountName),e.permission&&t.append("permission",e.permission),e.includeGroups!==void 0&&t.append("includeGroups",e.includeGroups.toString()),e.admin&&t.append("admin",e.admin),e.start!==void 0&&t.append("start",e.start.toString()),e.size!==void 0&&t.append("size",e.size.toString()),e.source&&t.append("source",e.source);let r=`search/network${t.toString()?`?${t.toString()}`:""}`;return this.http.get(r,{version:"v3"})}async getNetworkAsCX2Object(e,t={}){let r=await this.getRawCX2Network(e,t);return new F(r)}async createNetworkFromCX2(e,t={}){let r="networks",n=e instanceof F?JSON.parse(e.toJSON()):e;return this.http.post(r,n,{version:"v3",params:t})}async updateNetworkCX2(e,t){let r=`networks/${e}`,n=t instanceof F?JSON.parse(t.toJSON()):t;return this.http.put(r,n,{version:"v3"})}async uploadNetworkFile(e,t={}){return this.http.uploadFile("networks/upload",e,{version:"v3",...t})}async getNetworkMetadata(e){let t=`networks/${e}/metadata`;return this.http.get(t,{version:"v3"})}async updateNetworkMetadata(e,t){let r=`networks/${e}/metadata`;return this.http.put(r,t,{version:"v3"})}async getNetworkAspect(e,t,r={}){let n=new URLSearchParams;r.accesskey&&n.append("accesskey",r.accesskey);let i=`networks/${e}/aspects/${t}${n.toString()?`?${n.toString()}`:""}`;return this.http.get(i,{version:"v3"})}};var z=class{constructor(e){this.http=e;this.v2Service=new H(e),this.v3Service=new W(e);}async getNetworkSummary(e,t={}){return this.v3Service.getNetworkSummary(e,t)}async getRawCX1Network(e,t={}){return this.v2Service.getRawCX1Network(e,t)}async getRawCX2Network(e,t={}){return this.v3Service.getRawCX2Network(e,t)}async deleteNetwork(e){return this.v2Service.deleteNetwork(e)}async createNetworkDOI(e,t,r){return this.v3Service.createNetworkDOI(e,t,r)}async getAttributesOfSelectedNodes(e,t,r={}){return this.v3Service.getAttributesOfSelectedNodes(e,t,r)}async neighborhoodQuery(e,t,r,n,i=false){let o={};r!==void 0&&r===true&&(o.save="true");let c={searchString:t,searchDepth:1};if(n!==void 0&&(n.searchDepth!==void 0&&(c.searchDepth=n.searchDepth),n.edgeLimit!==void 0&&(c.edgeLimit=n.edgeLimit),n.errorWhenLimitIsOver!==void 0&&(c.errorWhenLimitIsOver=n.errorWhenLimitIsOver),n.directOnly!==void 0&&(c.directOnly=n.directOnly),n.nodeIds!=null&&(c.nodeIds=n.nodeIds)),i){let u=`search/network/${e}/query`;return this.http.post(u,c,{version:"v3",params:o})}let d=`search/network/${e}/query`;return this.http.post(d,c,{version:"v2",params:o})}async interConnectQuery(e,t,r,n,i=false){let o={};r!==void 0&&r===true&&(o.save="true");let c={searchString:t};if(n!==void 0&&(n.edgeLimit!==void 0&&(c.edgeLimit=n.edgeLimit),n.errorWhenLimitIsOver!==void 0&&(c.errorWhenLimitIsOver=n.errorWhenLimitIsOver),n.nodeIds!=null&&(c.nodeIds=n.nodeIds)),i){let u=`search/networks/${e}/interconnectquery`;return this.http.post(u,c,{version:"v3",params:o})}let d=`search/network/${e}/interconnectquery`;return this.http.post(d,c,{version:"v2",params:o})}async getNetworkPermissionsByUUIDs(e){return this.http.post("batch/network/permission",e,{version:"v2"})}async exportNetworks(e){return this.http.post("batch/network/export",e,{version:"v2"})}async moveNetworks(e,t){if(!Array.isArray(e))throw new Error("Invalid networkIds - must be an array");let r="batch/networks/move",n={targetFolder:t,networks:e};return this.http.post(r,n,{version:"v3"})}async setNetworksVisibility(e,t){this.validateShareData(e);let r="batch/networks/visibility",n={items:e,visibility:t};return this.http.post(r,n,{version:"v3"})}async getRandomEdges(e,t,r){if(t<=0)throw new Error("Value of parameter limit has to be greater than 0.");let n={size:t.toString(),method:"random"};r!==void 0&&(n.accesskey=r);let i=`networks/${e}/aspects/edges`;return this.http.get(i,{version:"v3",params:n})}validateShareData(e){if(typeof e!="object"||e===null||e.files===void 0)throw new Error('Data must be an object with a "files" property');if(typeof e.files!="object"||e.files===null)throw new Error('The "files" property must be an object');let t=["NETWORK","FOLDER","SHORTCUT"];for(let[r,n]of Object.entries(e.files)){if(!/^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i.test(r))throw new Error(`Invalid UUID format: ${r}`);if(!t.includes(n))throw new Error(`Invalid file type for ${r}: ${n}. Must be one of: ${t.join(", ")}`)}}async getAspectElements(e,t,r,n){let i={};r!==void 0&&(i.size=r.toString()),n!==void 0&&(i.accesskey=n);let o=`networks/${e}/aspects/${t}`;return this.http.get(o,{version:"v3",params:i})}async getFilteredEdges(e,t,r,n,i,o,c,d){let u={};i!==void 0&&(u.size=i.toString()),o!==void 0&&(u.order=o),d!==void 0&&(u.accesskey=d),c!==void 0&&(u.format=c);let p={name:t,value:r,operator:n},l=`search/networks/${e}/edges`;return this.http.post(l,p,{version:"v3",params:u})}async getCX2MetaData(e,t){let r={};t!==void 0&&(r.accesskey=t);let n=`networks/${e}/aspects`;return this.http.get(n,{version:"v3",params:r})}async createNetworkFromRawCX2(e,t={}){return this.v3.createNetworkFromCX2(e,t)}async updateNetworkFromRawCX2(e,t){let r=`networks/${e}`;return this.http.put(r,t,{version:"v3"})}get v2(){return this.v2Service}get v3(){return this.v3Service}};var J=class{constructor(e){this.http=e;}copyFile(e,t,r,n){let i={};return n!==void 0&&(i.accesskey=n),this.http.post("files/copy",{from_uuid:e,type:r,to_path:t},{params:i,version:"v3"})}getCount(){return this.http.get("files/count",{version:"v3"})}getTrash(){return this.http.get("files/trash",{version:"v3"})}emptyTrash(){return this.http.delete("files/trash",{version:"v3"})}permanentlyDeleteFile(e){return this.http.delete(`files/trash/${e}`,{version:"v3"})}restoreFile(e,t,r){return this.http.post("files/trash/restore",{networks:e,folders:t,shortcuts:r},{version:"v3"})}_validateShareData(e){if(typeof e!="object"||e===null||e.files===void 0)throw new Error('Data must be an object with a "files" property');if(typeof e.files!="object"||e.files===null)throw new Error('The "files" property must be an object');let t=["NETWORK","FOLDER","SHORTCUT"];for(let[r,n]of Object.entries(e.files)){if(!/^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i.test(r))throw new Error(`Invalid UUID format: ${r}`);if(!t.includes(n))throw new Error(`Invalid file type for ${r}: ${n}. Must be one of: ${t.join(", ")}`)}}_validateMemberData(e){if(typeof e!="object"||e===null||e.members===void 0)throw new Error('Data must be an object with a "members" property');let t=["READ","WRITE"];for(let[r,n]of Object.entries(e.members)){if(!t.includes(n))throw new Error(`Invalid permission for ${r}: ${n}. Must be one of: ${t.join(", ")}`);if(typeof r!="string"||!/^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$/i.test(r))throw new Error(`Invalid UUID format: ${r}`)}}updateMember(e,t){return this._validateShareData({files:e}),this._validateMemberData({members:t}),this.http.post("files/sharing/members",{files:e,members:t},{version:"v3"})}listMembers(e){return this.http.get("files/sharing/members/list",{params:e,version:"v3"})}transferOwnership(e,t){return this._validateShareData({files:e}),this.http.post("files/sharing/transfer_ownership",{files:e,new_owner:t},{version:"v3"})}listShares(e){let t={};return e!==void 0&&(t.limit=e),this.http.post("files/sharing/list",t,{version:"v3"})}share(e){return this._validateShareData({files:e}),this.http.post("files/sharing/share",{files:e},{version:"v3"})}unshare(e){return this._validateShareData({files:e}),this.http.post("files/sharing/unshare",{files:e},{version:"v3"})}getFolders(e){let t={};return e!==void 0&&(t.limit=e),this.http.get("files/folders",{params:t,version:"v3"})}createFolder(e,t){return this.http.post("files/folders",{name:e,parent:t},{version:"v3"})}getFolder(e,t){let r={};return t!==void 0&&(r.accesskey=t),this.http.get(`files/folders/${e}`,{params:r,version:"v3"})}updateFolder(e,t,r){return this.http.put(`files/folders/${e}`,{name:t,parent:r},{version:"v3"})}deleteFolder(e){return this.http.delete(`files/folders/${e}`,{version:"v3"})}getFolderCount(e,t){let r={};return t!==void 0&&(r.accesskey=t),this.http.get(`files/folders/${e}/count`,{params:r,version:"v3"})}getFolderList(e,t,r,n){let i={};return t!==void 0&&(i.accesskey=t),r!==void 0&&(i.format=r),n!==void 0&&(i.type=n),this.http.get(`files/folders/${e}/list`,{params:i,version:"v3"})}getShortcuts(e){let t={};return e!==void 0&&(t.limit=e),this.http.get("files/shortcuts",{params:t,version:"v3"})}createShortcut(e,t,r,n){return this.http.post("files/shortcuts",{name:e,parent:t,target:r,targetType:n},{version:"v3"})}getShortcut(e,t){let r={};return t!==void 0&&(r.accesskey=t),this.http.get(`files/shortcuts/${e}`,{params:r,version:"v3"})}updateShortcut(e,t,r,n,i){return this.http.put(`files/shortcuts/${e}`,{name:t,parent:r,target:n,targetType:i},{version:"v3"})}deleteShortcut(e){return this.http.delete(`files/shortcuts/${e}`,{version:"v3"})}};var K=class{constructor(e){this.http=e;}async createCyWebWorkspace(e){return this.http.post("workspaces",e,{version:"v3"})}async getCyWebWorkspace(e){let t=`workspaces/${e}`;return this.http.get(t,{version:"v3"})}async deleteCyWebWorkspace(e){let t=`workspaces/${e}`;return this.http.delete(t,{version:"v3"})}async updateCyWebWorkspace(e,t){let r=`workspaces/${e}`;return this.http.put(r,t,{version:"v3"})}async updateCyWebWorkspaceName(e,t){let r=`workspaces/${e}/name`;return this.http.put(r,{name:t},{version:"v3"})}async updateCyWebWorkspaceNetworks(e,t){let 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this.axiosInstance.get(e)).data}async _httpPost(e,t,r){return (await this.axiosInstance.post(e,r,{params:t})).data}async _httpPut(e,t,r){return (await this.axiosInstance.put(e,r,{params:t})).data}async getCyNDExStatus(){return this._httpGet("/cyndex2/v1")}async getCytoscapeNetworkSummary(e="current"){return this._httpGet(`/cyndex2/v1/networks/${e}`)}async postNDExNetworkToCytoscape(e,t,r){let n={serverUrl:`${this.ndexBaseURL}/v2`,uuid:e,accessKey:t,createView:r,...this.getAuthFields()};return this._httpPost("/cyndex2/v1/networks",void 0,n)}async postCXNetworkToCytoscape(e){return this._httpPost("/cyndex2/v1/networks/cx",void 0,e)}async postCX2NetworkToCytoscape(e,t,r){let n={format:"cx2",collection:r,title:t};return this._httpPost("/v1/networks",n,e)}async postCytoscapeNetworkToNDEx(e="current"){let t={serverUrl:`${this.ndexBaseURL}/v2`,...this.getAuthFields()};return this._httpPost(`/cyndex2/v1/networks/${e}`,void 0,t)}async putCytoscapeNetworkInNDEx(e="current",t){let r={serverUrl:`${this.ndexBaseURL}/v2`,uuid:t,...this.getAuthFields()};return this._httpPut(`/cyndex2/v1/networks/${e}`,void 0,r)}};var Ie="0.6.0-alpha.2";var Le=class{constructor(e={}){this.config={baseURL:"https://www.ndexbio.org",timeout:3e4,retries:3,retryDelay:1e3,debug:false,...e};let t={"Content-Type":"application/json",...this.config.headers,...this.getAuthHeaders()};typeof window>"u"&&(t["User-Agent"]=`NDEx-JS-Client/${Ie}`),this.axiosInstance=q.create({baseURL:this.config.baseURL,timeout:this.config.timeout,headers:t}),this.setupInterceptors();}getAuthHeaders(){return this.config.auth?this.config.auth.type==="basic"?{Authorization:`Basic ${btoa(`${this.config.auth.username}:${this.config.auth.password}`)}`}:this.config.auth.type==="oauth"?{Authorization:`Bearer ${this.config.auth.idToken}`}:{}:{}}buildUrl(e,t="v2"){let r=e.startsWith("/")?e.slice(1):e;return `/${t}/${r}`}async get(e,t){let{version:r,...n}=t||{},i=this.buildUrl(e,r);try{let o=await this.axiosInstance.get(i,n);return this.handleResponse(o)}catch(o){this.handleError(o);}}async post(e,t,r){let{version:n,...i}=r||{},o=this.buildUrl(e,n);try{let c=await this.axiosInstance.post(o,t,i);return this.handleResponse(c)}catch(c){this.handleError(c);}}async put(e,t,r){let{version:n,...i}=r||{},o=this.buildUrl(e,n);try{let c=await this.axiosInstance.put(o,t,i);return this.handleResponse(c)}catch(c){this.handleError(c);}}async delete(e,t){let{version:r,...n}=t||{},i=this.buildUrl(e,r);try{let o=await this.axiosInstance.delete(i,n);return this.handleResponse(o)}catch(o){this.handleError(o);}}async uploadFile(e,t,r={}){let{version:n,onProgress:i,contentType:o,...c}=r,d=this.buildUrl(e,n),u=new FormData;if(t instanceof File)u.append("file",t,t.name);else if(t instanceof Blob)u.append("file",t,"file.cx2");else if(typeof t=="string"){let p=new Blob([t],{type:o||"application/json"});u.append("file",p,"file.cx2");}else u.append("file",t,"file.cx2");try{let p=await this.axiosInstance.post(d,u,{headers:{"Content-Type":"multipart/form-data"},onUploadProgress:i?l=>{let y=Math.round(l.loaded*100/(l.total||1));i(y);}:void 0,...c});return this.handleResponse(p)}catch(p){this.handleError(p);}}setupInterceptors(){this.axiosInstance.interceptors.request.use(e=>(this.config.debug&&console.log("NDEx API Request:",{method:e.method?.toUpperCase(),url:e.url,headers:e.headers}),e),e=>(this.config.debug&&console.error("NDEx API Request Error:",e),Promise.reject(e))),this.axiosInstance.interceptors.response.use(e=>(this.config.debug&&console.log("NDEx API Response:",{status:e.status,url:e.config.url,data:e.data}),e),e=>(this.config.debug&&console.error("NDEx API Response Error:",e.response?.data||e.message),Promise.reject(e)));}handleResponse(e){return e.data&&typeof e.data=="object"&&"errorCode"in e.data&&this.throwNDExError(e.data.message||"Unknown error occurred",e.status,e.data.errorCode||"UNKNOWN_ERROR",e.data.description),e.data&&typeof e.data=="object"&&"data"in e.data?e.data.data:e.data}handleError(e){if(e.response){let t=e.response.data?.message||e.message,r=e.response.data?.errorCode||`HTTP_${e.response.status}`,n=e.response.data?.description;this.throwNDExError(t,e.response.status,r,n);}else throw e.request?new le("Network error - no response received",e):new A(e.message||"Unknown error occurred",void 0,"CLIENT_ERROR",e.toString())}throwNDExError(e,t,r,n){switch(t){case 400:throw new he(e,t);case 401:case 403:throw new fe(e,t);case 404:throw new me(e,t);case 500:case 502:case 503:case 504:throw new ge(e,t);default:throw new A(e,t,r,n)}}updateConfig(e){if(this.config={...this.config,...e},e.baseURL&&(this.axiosInstance.defaults.baseURL=e.baseURL),e.timeout&&(this.axiosInstance.defaults.timeout=e.timeout),e.headers&&Object.assign(this.axiosInstance.defaults.headers,e.headers),"auth"in e){let t=this.getAuthHeaders();delete this.axiosInstance.defaults.headers.common.Authorization,Object.assign(this.axiosInstance.defaults.headers.common,t);}}getConfig(){return {...this.config}}getAuthType(){return this.config.auth?.type}getIdToken(){return this.config.auth?.type==="oauth"?this.config.auth.idToken:void 0}setIdToken(e){this.updateConfig({auth:{type:"oauth",idToken:e}});}};var Ht=class{constructor(e={}){this.httpService=new Le(e),this.networks=new z(this.httpService),this.files=new J(this.httpService),this.workspace=new K(this.httpService),this.user=new G(this.httpService),this.admin=new Q(this.httpService);}logout(){this.httpService.updateConfig({auth:void 0});}async getServerStatus(e){let t=new URLSearchParams;e&&t.append("format",e);let r=`admin/status${t.toString()?`?${t.toString()}`:""}`;return this.httpService.get(r)}hasAuthInfo(){let e=this.httpService.getConfig().auth;return e?e.type==="basic"?!!e.username&&!!e.password:e.type==="oauth"?!!e.idToken:false:false}updateConfig(e){this.httpService.updateConfig(e);}getConfig(){return this.httpService.getConfig()}get http(){return this.httpService}get v2(){return {networks:this.networks.v2}}get v3(){return {networks:this.networks.v3}}},fa=Ie;
+exports.AdminService=Q;exports.CX2Network=F;exports.CyNDEx=Ue;exports.CyNDExService=Ue;exports.FilesService=J;exports.NDExAuthError=fe;exports.NDExClient=Ht;exports.NDExError=A;exports.NDExNetworkError=le;exports.NDExNotFoundError=me;exports.NDExServerError=ge;exports.NDExValidationError=he;exports.NetworkIndexLevel=Jt;exports.NetworkServiceV2=H;exports.NetworkServiceV3=W;exports.UnifiedNetworkService=z;exports.UserService=G;exports.WorkspaceService=K;exports.version=fa;return exports;})({});//# sourceMappingURL=index.global.js.map
 //# sourceMappingURL=index.global.js.map