@js4cytoscape/ndex-client 0.4.3-alpha.9 → 0.5.0-alpha.1

package/package.json

@@ -1,10 +1,10 @@
 {
   "name": "@js4cytoscape/ndex-client",
-  "version": "0.4.3-alpha.9",
+  "version": "0.5.0-alpha.1",
   "description": "NDEx client library",
   "repository": {
     "type": "git",
-    "url": "https://github.com/cytoscape/js4cytoscape.git"
+    "url": "git+https://github.com/cytoscape/js4cytoscape.git"
   },
   "bugs": {
     "url": "https://github.com/cytoscape/js4cytoscape/issues"
@@ -20,7 +20,7 @@
     "watch:js": "webpack --watch",
     "build": "webpack --mode=development",
     "build-prod": "webpack --mode=production",
-    "test": "nyc mocha"
+    "test": "nyc mocha --require @babel/register"
   },
   "author": "Jing Chen",
   "license": "MIT",
@@ -28,9 +28,18 @@
     "node": ">=12.16.1"
   },
   "dependencies": {
-    "axios": "^1.6.7"
+    "axios": "^1.6.8"
   },
   "devDependencies": {
-    "@microsoft/tsdoc": "^0.14.2"
+    "@microsoft/tsdoc": "^0.14.2",
+    "@babel/core": "^7.14.6",
+    "@babel/preset-env": "^7.14.5",
+    "@babel/register": "^7.14.5",
+    "babel-plugin-istanbul": "^6.0.0"
+  },
+  "babel": {
+    "presets": [
+      "@babel/preset-env"
+    ]
   }
 }

package/src/CyNDEx.js

@@ -1,6 +1,6 @@
 const CY_REST_BASE_URL = 'http://127.0.0.1';
 
-const axios = require('axios');
+import { default as axios } from 'axios';
 
 class CyNDEx {
 
@@ -175,4 +175,4 @@ class CyNDEx {
   }
 }
 
-module.exports = { CyNDEx };
+export default CyNDEx ;

package/src/NDEx.js

@@ -1,4 +1,4 @@
-const axios = require('axios');
+import { default as axios } from 'axios';
 
 const CX1_HEADER = {
   numberVerification: [{
@@ -857,5 +857,176 @@ class NDEx {
     });
   }
 
+  signInFromIdToken(idToken) {
+   return this._httpPostV3ProtectedObj('users/signin', undefined, {idToken: idToken});
+  }
+
+  // V3-Files APIs
+  copyFile(fromUuid, toPath, type, accessKey) {
+    let parameters = {};
+
+    if (accessKey !== undefined) {
+      parameters ['accesskey'] = accessKey;
+    }
+    return this._httpPostV3ProtectedObj('files/copy', parameters, {from_uuid: fromUuid, type: type, to_path: toPath,});
+  }
+
+  getCount() {
+    return this._httpGetV3ProtectedObj('files/count', {});
+  }
+
+  getTrash(){
+    return this._httpGetV3ProtectedObj('files/trash', {});
+  }
+
+  restoreFile(networkIds, folderIds, shortcutIds) {
+    return this._httpPostV3ProtectedObj('files/trash/restore', undefined, {networks: networkIds, folders: folderIds, shortcuts: shortcutIds});
+  }
+  // Sharing
+  _validateSharingData(data, membersValidation) {
+    if (!Array.isArray(data)) throw new Error("Data must be an array");
+
+    data.forEach((entry, i) => {
+      if (!entry.uuid || typeof entry.uuid !== 'string') {
+        throw new Error(`Entry ${i} is missing a valid uuid`);
+      }
+      if (!entry.type || typeof entry.type !== 'string') {
+        throw new Error(`Entry ${i} is missing a valid type`);
+      }
+      
+      if (membersValidation === 'object') {
+        if (
+          typeof entry.members !== 'object' ||
+          Array.isArray(entry.members) ||
+          entry.members === null
+        ) {
+          throw new Error(`Entry ${i} has invalid members`);
+        }
+      } else if (membersValidation === 'array') {
+        if (!entry.members || !Array.isArray(entry.members)) {
+          throw new Error(`Entry ${i} has invalid members`);
+        }
+      }
+    });
+    
+    return data;
+  }
+  
+  addMember(data){
+    data = this._validateSharingData(data, 'object');
+    return this._httpPostV3ProtectedObj('files/sharing/add_member', undefined, data);
+  }
+
+  removeMember(data){
+    data = this._validateSharingData(data, 'array');
+    return this._httpPostV3ProtectedObj('files/sharing/remove_member', undefined, data);
+  }
+
+  updateMember(data){
+    data = this._validateSharingData(data, 'object');
+    return this._httpPostV3ProtectedObj('files/sharing/update_member', undefined, data);
+  }
+
+  transferOwnership(uuid,type,toUser){
+
+  }
+
+  listShares(limit){
+    let parameters = {};
+    if(limit !== undefined){
+      parameters['limit'] = limit;
+    }
+    return this._httpGetV3ProtectedObj('files/sharing/list', parameters);
+  }
+  
+  share(uuid,type){
+    return this._httpPostV3ProtectedObj('files/sharing/share', undefined, {uuid: uuid, type: type});
+  }
+
+  unshare(uuid,type){
+    return this._httpPostV3ProtectedObj('files/sharing/unshare', undefined, {uuid: uuid, type: type});
+  }
+
+  // Folder
+  getFolders(limit){
+    let parameters = {};
+
+    if (limit !== undefined) {
+      parameters ['limit'] = limit;
+    }
+    return this._httpGetV3ProtectedObj('files/folders', parameters);
+  }
+  
+  createFolder(name, parentFolderId) {
+    return this._httpPostV3ProtectedObj('files/folders', undefined, {name: name, parent: parentFolderId});
+  }
+
+  getFolder(folderId, accessKey) {
+    let parameters = {};
+
+    if (accessKey !== undefined) {
+      parameters ['accesskey'] = accessKey;
+    }
+    return this._httpGetV3ProtectedObj('files/folders/' + folderId, parameters);
+  }
+
+  updateFolder(folderId, name, parentFolderId) {
+    return this._httpPutV3Obj('files/folders/' + folderId, undefined, {name: name, parent: parentFolderId});
+  }
+
+  deleteFolder(folderId) {
+    return this._httpDeleteV3Obj('files/folders/' + folderId, undefined);
+  }
+
+  getFolderCount(folderId, accessKey) {
+    let parameters = {};
+
+    if (accessKey !== undefined) {
+      parameters ['accesskey'] = accessKey;
+    }
+    return this._httpGetV3ProtectedObj('files/folders/' + folderId + '/count', parameters);
+  }
+
+  getFolderList(folderId, accessKey) {
+    let parameters = {};
+
+    if (accessKey !== undefined) {
+      parameters ['accesskey'] = accessKey;
+    }
+    return this._httpGetV3ProtectedObj('files/folders/' + folderId + '/list', parameters);
+  }
+
+  // Sortcut
+  getShortcuts(limit){
+    let parameters = {};
+
+    if (limit !== undefined) {
+      parameters ['limit'] = limit;
+    }
+    return this._httpGetV3ProtectedObj('files/shortcuts', parameters);
+  }
+
+  createShortcut(name, parentFolderId, targetId) {
+    return this._httpPostV3ProtectedObj('files/shortcuts', undefined, {name: name, parent: parentFolderId, target: targetId});
+  }
+
+  getShortcut(shortcutId, accessKey) {
+    let parameters = {};
+
+    if (accessKey !== undefined) {
+      parameters ['accesskey'] = accessKey;
+    }
+    return this._httpGetV3ProtectedObj('files/shortcuts/' + shortcutId, parameters);
+  }
+  
+  updateShortcut(shortcutId, name, parentFolderId, targetId) {
+    return this._httpPutV3Obj('files/shortcuts/' + shortcutId, undefined, {name: name, parent: parentFolderId, target: targetId});
+  }
+
+  delteShortcut(shortcutId) {
+    return this._httpDeleteV3Obj('files/shortcuts/' + shortcutId, undefined);
+  }
+
 }
-  module.exports = { NDEx };
+
+export default  NDEx;

package/src/index.js

@@ -1,4 +1,2 @@
-let NDEx = require('./NDEx.js').NDEx;
-let CyNDEx = require('./CyNDEx.js').CyNDEx;
-
-module.exports = { NDEx, CyNDEx };
+export { default as NDEx } from './NDEx.js';
+export { default as CyNDEx } from './CyNDEx.js';