@johnfaleke/fathom 0.2.1 → 0.3.0

package/dist/mcp/resources.js

@@ -0,0 +1,65 @@
+import path from "node:path";
+import { readFile } from "node:fs/promises";
+import { fathomPaths, isInitialized } from "../core/storage.js";
+export const MCP_RESOURCES = [
+    {
+        uri: "fathom://state",
+        name: "Fathom Work State",
+        description: "The active project Work State snapshot (.fathom/state.json)",
+        mimeType: "application/json",
+    },
+    {
+        uri: "fathom://model",
+        name: "Fathom Project Model",
+        description: "The durable evidence-backed Project Model (.fathom/model.json)",
+        mimeType: "application/json",
+    },
+    {
+        uri: "fathom://config",
+        name: "Fathom Config",
+        description: "Local project configuration and ignore rules (.fathom/config.json)",
+        mimeType: "application/json",
+    },
+    {
+        uri: "fathom://events",
+        name: "Fathom Event Log",
+        description: "Append-only log of repository checks, scans, and updates (.fathom/events.jsonl)",
+        mimeType: "text/plain",
+    },
+];
+export async function readMCPResource(root, uri) {
+    const absRoot = path.resolve(root);
+    if (!(await isInitialized(absRoot))) {
+        throw new Error("Fathom is not initialized in this workspace.");
+    }
+    const paths = fathomPaths(absRoot);
+    let filePath;
+    let mimeType = "application/json";
+    switch (uri) {
+        case "fathom://state":
+            filePath = paths.state;
+            break;
+        case "fathom://model":
+            filePath = paths.model;
+            break;
+        case "fathom://config":
+            filePath = paths.config;
+            break;
+        case "fathom://events":
+            filePath = paths.events;
+            mimeType = "text/plain";
+            break;
+        default:
+            throw new Error(`Resource not found: ${uri}`);
+    }
+    try {
+        const text = await readFile(filePath, "utf8");
+        return {
+            contents: [{ uri, mimeType, text }],
+        };
+    }
+    catch (error) {
+        throw new Error(`Failed to read resource ${uri}: ${error instanceof Error ? error.message : String(error)}`);
+    }
+}
+//# sourceMappingURL=resources.js.map

package/dist/mcp/resources.js.map

@@ -0,0 +1 @@
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package/dist/mcp/server.d.ts

@@ -0,0 +1,24 @@
+interface JSONRPCRequest {
+    jsonrpc: "2.0";
+    id?: string | number | null;
+    method: string;
+    params?: Record<string, unknown>;
+}
+interface JSONRPCResponse {
+    jsonrpc: "2.0";
+    id: string | number | null;
+    result?: unknown;
+    error?: {
+        code: number;
+        message: string;
+        data?: unknown;
+    };
+}
+export declare class FathomMCPServer {
+    private readonly root;
+    constructor(root: string);
+    start(): Promise<void>;
+    handleRequest(req: JSONRPCRequest): Promise<JSONRPCResponse | null>;
+}
+export {};
+//# sourceMappingURL=server.d.ts.map

package/dist/mcp/server.d.ts.map

@@ -0,0 +1 @@
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package/dist/mcp/server.js

@@ -0,0 +1,126 @@
+import readline from "node:readline";
+import { MCP_TOOLS, executeMCPTool } from "./tools.js";
+import { MCP_RESOURCES, readMCPResource } from "./resources.js";
+export class FathomMCPServer {
+    root;
+    constructor(root) {
+        this.root = root;
+    }
+    async start() {
+        const rl = readline.createInterface({
+            input: process.stdin,
+            output: process.stdout,
+            terminal: false,
+        });
+        rl.on("line", async (line) => {
+            const trimmed = line.trim();
+            if (!trimmed)
+                return;
+            try {
+                const req = JSON.parse(trimmed);
+                const res = await this.handleRequest(req);
+                if (res) {
+                    process.stdout.write(JSON.stringify(res) + "\n");
+                }
+            }
+            catch (err) {
+                const errorResponse = {
+                    jsonrpc: "2.0",
+                    id: null,
+                    error: {
+                        code: -32700,
+                        message: "Parse error",
+                        data: err instanceof Error ? err.message : String(err),
+                    },
+                };
+                process.stdout.write(JSON.stringify(errorResponse) + "\n");
+            }
+        });
+    }
+    async handleRequest(req) {
+        // If it's a notification without an id, do not respond unless required
+        const isNotification = req.id === undefined || req.id === null;
+        switch (req.method) {
+            case "initialize": {
+                const result = {
+                    protocolVersion: "2024-11-05",
+                    capabilities: {
+                        tools: {},
+                        resources: {},
+                    },
+                    serverInfo: {
+                        name: "fathom",
+                        version: "0.3.0",
+                    },
+                };
+                return { jsonrpc: "2.0", id: req.id ?? null, result };
+            }
+            case "notifications/initialized":
+            case "initialized":
+                return null;
+            case "ping":
+                return { jsonrpc: "2.0", id: req.id ?? null, result: {} };
+            case "tools/list": {
+                return {
+                    jsonrpc: "2.0",
+                    id: req.id ?? null,
+                    result: {
+                        tools: MCP_TOOLS,
+                    },
+                };
+            }
+            case "tools/call": {
+                const toolName = String(req.params?.name ?? "");
+                const toolArgs = req.params?.arguments ?? {};
+                const outcome = await executeMCPTool(this.root, toolName, toolArgs);
+                return {
+                    jsonrpc: "2.0",
+                    id: req.id ?? null,
+                    result: outcome,
+                };
+            }
+            case "resources/list": {
+                return {
+                    jsonrpc: "2.0",
+                    id: req.id ?? null,
+                    result: {
+                        resources: MCP_RESOURCES,
+                    },
+                };
+            }
+            case "resources/read": {
+                const uri = String(req.params?.uri ?? "");
+                try {
+                    const outcome = await readMCPResource(this.root, uri);
+                    return {
+                        jsonrpc: "2.0",
+                        id: req.id ?? null,
+                        result: outcome,
+                    };
+                }
+                catch (err) {
+                    return {
+                        jsonrpc: "2.0",
+                        id: req.id ?? null,
+                        error: {
+                            code: -32602,
+                            message: err instanceof Error ? err.message : String(err),
+                        },
+                    };
+                }
+            }
+            default:
+                if (isNotification)
+                    return null;
+                return {
+                    jsonrpc: "2.0",
+                    id: req.id ?? null,
+                    error: {
+                        code: -32601,
+                        message: `Method not found: ${req.method}`,
+                    },
+                };
+        }
+    }
+}
+//# sourceMappingURL=server.js.map

package/dist/mcp/server.js.map

@@ -0,0 +1 @@
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package/dist/mcp/tools.d.ts

@@ -0,0 +1,18 @@
+export interface MCPToolDefinition {
+    name: string;
+    description: string;
+    inputSchema: {
+        type: "object";
+        properties?: Record<string, unknown>;
+        required?: string[];
+    };
+}
+export declare const MCP_TOOLS: MCPToolDefinition[];
+export declare function executeMCPTool(root: string, toolName: string, args?: Record<string, unknown>): Promise<{
+    content: Array<{
+        type: "text";
+        text: string;
+    }>;
+    isError?: boolean;
+}>;
+//# sourceMappingURL=tools.d.ts.map

package/dist/mcp/tools.d.ts.map

@@ -0,0 +1 @@
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package/dist/mcp/tools.js

@@ -0,0 +1,251 @@
+import path from "node:path";
+import { builtinChecks } from "../checks/index.js";
+import { gitChangedFiles, gitDiffStat, gitIsRepo } from "../core/git.js";
+import { buildProjectModel } from "../core/model.js";
+import { createProjectContext } from "../core/project.js";
+import { runChecks } from "../core/runner.js";
+import { applyFindings, isInitialized, loadConfig, loadProjectModel, loadState, saveProjectModel, saveState, appendEvent, } from "../core/storage.js";
+export const MCP_TOOLS = [
+    {
+        name: "fathom_status",
+        description: "Get current project Work State, active tasks, completed/remaining items, deterministic findings with evidence, and git change impact.",
+        inputSchema: {
+            type: "object",
+            properties: {},
+        },
+    },
+    {
+        name: "fathom_scan",
+        description: "Scan repository files and manifests to build an evidence-backed Project Model with stack detection and confidence-scored claims in .fathom/model.json.",
+        inputSchema: {
+            type: "object",
+            properties: {},
+        },
+    },
+    {
+        name: "fathom_check",
+        description: "Run deterministic cross-artifact checks (e.g. missing environment variables in .env.example, undeclared dependencies in package.json).",
+        inputSchema: {
+            type: "object",
+            properties: {},
+        },
+    },
+    {
+        name: "fathom_set_work",
+        description: "Update project Work State with active task intent, completed items, and remaining items.",
+        inputSchema: {
+            type: "object",
+            properties: {
+                currentWork: {
+                    type: "string",
+                    description: "Description of the active work or goal currently in progress",
+                },
+                completed: {
+                    type: "array",
+                    items: { type: "string" },
+                    description: "List of completed tasks or milestones to add",
+                },
+                incomplete: {
+                    type: "array",
+                    items: { type: "string" },
+                    description: "List of remaining or follow-up tasks to add",
+                },
+            },
+        },
+    },
+    {
+        name: "fathom_diff",
+        description: "Get semantic project-level diff grouped by area (Source, Tests, Docs, Config) and git stat summary.",
+        inputSchema: {
+            type: "object",
+            properties: {},
+        },
+    },
+    {
+        name: "fathom_get_model",
+        description: "Retrieve the durable Project Model (.fathom/model.json) containing indexed files, observations, and claims.",
+        inputSchema: {
+            type: "object",
+            properties: {},
+        },
+    },
+];
+export async function executeMCPTool(root, toolName, args = {}) {
+    const absRoot = path.resolve(root);
+    if (!(await isInitialized(absRoot))) {
+        return {
+            content: [
+                {
+                    type: "text",
+                    text: JSON.stringify({
+                        error: "Fathom is not initialized in this workspace. Run fathom init first.",
+                    }),
+                },
+            ],
+            isError: true,
+        };
+    }
+    try {
+        const config = await loadConfig(absRoot);
+        switch (toolName) {
+            case "fathom_status": {
+                const ctx = await createProjectContext(absRoot, config);
+                const findings = await runChecks(ctx, builtinChecks);
+                const changed = await gitChangedFiles(absRoot);
+                let state = await loadState(absRoot);
+                state = applyFindings(state, findings);
+                state.changes = {
+                    filesChanged: changed.length,
+                    summary: changed.slice(0, 20).map((f) => `~ ${f}`),
+                };
+                await saveState(absRoot, state);
+                return {
+                    content: [{ type: "text", text: JSON.stringify(state, null, 2) }],
+                };
+            }
+            case "fathom_scan": {
+                const ctx = await createProjectContext(absRoot, config);
+                const model = await buildProjectModel(ctx);
+                await saveProjectModel(absRoot, model);
+                await appendEvent(absRoot, {
+                    type: "scan",
+                    at: new Date().toISOString(),
+                    files: model.project.files,
+                    claims: model.claims.length,
+                });
+                return {
+                    content: [{ type: "text", text: JSON.stringify(model, null, 2) }],
+                };
+            }
+            case "fathom_check": {
+                const ctx = await createProjectContext(absRoot, config);
+                const findings = await runChecks(ctx, builtinChecks);
+                let state = await loadState(absRoot);
+                state = applyFindings(state, findings);
+                await saveState(absRoot, state);
+                return {
+                    content: [
+                        {
+                            type: "text",
+                            text: JSON.stringify({
+                                findings,
+                                attention: state.attention,
+                                findingsCount: findings.length,
+                            }, null, 2),
+                        },
+                    ],
+                };
+            }
+            case "fathom_set_work": {
+                let state = await loadState(absRoot);
+                if (typeof args.currentWork === "string") {
+                    state.currentWork = args.currentWork;
+                }
+                if (Array.isArray(args.completed)) {
+                    const titles = args.completed.filter((t) => typeof t === "string");
+                    state.completed = mergeWorkItems(state.completed, titles, "completed");
+                }
+                if (Array.isArray(args.incomplete)) {
+                    const titles = args.incomplete.filter((t) => typeof t === "string");
+                    state.incomplete = mergeWorkItems(state.incomplete, titles, "incomplete");
+                }
+                await saveState(absRoot, state);
+                await appendEvent(absRoot, {
+                    type: "set_work",
+                    at: new Date().toISOString(),
+                    currentWork: state.currentWork,
+                    completedCount: state.completed.length,
+                    incompleteCount: state.incomplete.length,
+                });
+                return {
+                    content: [
+                        {
+                            type: "text",
+                            text: JSON.stringify({
+                                success: true,
+                                currentWork: state.currentWork,
+                                completed: state.completed,
+                                incomplete: state.incomplete,
+                            }, null, 2),
+                        },
+                    ],
+                };
+            }
+            case "fathom_diff": {
+                if (!(await gitIsRepo(absRoot))) {
+                    return {
+                        content: [{ type: "text", text: JSON.stringify({ error: "Not a git repository." }) }],
+                        isError: true,
+                    };
+                }
+                const files = await gitChangedFiles(absRoot);
+                const summary = await gitDiffStat(absRoot);
+                return {
+                    content: [{ type: "text", text: JSON.stringify({ files, summary }, null, 2) }],
+                };
+            }
+            case "fathom_get_model": {
+                try {
+                    const model = await loadProjectModel(absRoot);
+                    return {
+                        content: [{ type: "text", text: JSON.stringify(model, null, 2) }],
+                    };
+                }
+                catch {
+                    return {
+                        content: [
+                            {
+                                type: "text",
+                                text: JSON.stringify({
+                                    error: "Project Model not found. Run fathom_scan first to build model.json.",
+                                }),
+                            },
+                        ],
+                        isError: true,
+                    };
+                }
+            }
+            default:
+                return {
+                    content: [{ type: "text", text: JSON.stringify({ error: `Unknown tool: ${toolName}` }) }],
+                    isError: true,
+                };
+        }
+    }
+    catch (error) {
+        return {
+            content: [
+                {
+                    type: "text",
+                    text: JSON.stringify({ error: error instanceof Error ? error.message : String(error) }),
+                },
+            ],
+            isError: true,
+        };
+    }
+}
+function mergeWorkItems(current, nextTitles, status) {
+    const clean = nextTitles.map((t) => t.trim()).filter(Boolean);
+    const seen = new Set();
+    const merged = [];
+    for (const item of current) {
+        const key = item.title.trim().toLowerCase();
+        if (!seen.has(key) && item.status === status) {
+            seen.add(key);
+            merged.push(item);
+        }
+    }
+    for (const title of clean) {
+        const key = title.toLowerCase();
+        if (seen.has(key))
+            continue;
+        seen.add(key);
+        merged.push({
+            id: `${status}-${title.toLowerCase().replace(/[^a-z0-9]+/g, "-")}`,
+            title,
+            status,
+        });
+    }
+    return merged;
+}
+//# sourceMappingURL=tools.js.map

package/dist/mcp/tools.js.map

@@ -0,0 +1 @@
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package/dist/render/terminal.d.ts

@@ -5,4 +5,6 @@ export declare function renderInterpretation(result: AIInterpretationResult, con
 export declare function renderFindings(findings: Finding[]): string;
 export declare function renderStatus(state: WorkState): string;
 export declare function renderDiff(summary: string[], files: string[]): string;
+export declare function renderGitHubAnnotations(findings: Finding[]): string;
+export declare function renderMarkdownSummary(state: WorkState, findings: Finding[], interpretation?: AIInterpretationResult): string;
 //# sourceMappingURL=terminal.d.ts.map

package/dist/render/terminal.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"terminal.d.ts","sourceRoot":"","sources":["../../src/render/terminal.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,sBAAsB,EAAE,MAAM,mBAAmB,CAAC;AAChE,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,kBAAkB,CAAC;AACtD,OAAO,KAAK,EAAE,OAAO,EAAE,SAAS,EAAE,MAAM,aAAa,CAAC;AAEtD,wBAAgB,oBAAoB,CAAC,MAAM,EAAE,sBAAsB,EAAE,OAAO,EAAE,aAAa,GAAG,MAAM,CAiBnG;AAED,wBAAgB,cAAc,CAAC,QAAQ,EAAE,OAAO,EAAE,GAAG,MAAM,CA0B1D;AAED,wBAAgB,YAAY,CAAC,KAAK,EAAE,SAAS,GAAG,MAAM,CA2CrD;AAED,wBAAgB,UAAU,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,CA+BrE;AAoBD,wBAAgB,uBAAuB,CAAC,QAAQ,EAAE,OAAO,EAAE,GAAG,MAAM,CAenE;AAED,wBAAgB,qBAAqB,CACnC,KAAK,EAAE,SAAS,EAChB,QAAQ,EAAE,OAAO,EAAE,EACnB,cAAc,CAAC,EAAE,sBAAsB,GACtC,MAAM,CA6CR"}

package/dist/render/terminal.js

@@ -126,6 +126,57 @@ function groupFilesByArea(files) {
     }
     return [...buckets.entries()].map(([label, items]) => ({ label, items: items.slice(0, 3) }));
 }
+export function renderGitHubAnnotations(findings) {
+    if (findings.length === 0)
+        return "";
+    const lines = [];
+    for (const f of findings) {
+        const level = f.severity === "potential" ? "notice" : f.severity === "warning" ? "warning" : "notice";
+        const primaryEvidence = f.evidence.find((e) => Boolean(e.path));
+        const filePath = primaryEvidence?.path;
+        const title = titleCase(f.category);
+        const fileAttr = filePath ? ` file=${filePath},` : " ";
+        lines.push(`::${level}${fileAttr}title=${title}::${f.message.replace(/\r?\n/g, " ")}`);
+    }
+    return lines.join("\n") + "\n";
+}
+export function renderMarkdownSummary(state, findings, interpretation) {
+    const lines = [
+        `# Fathom Report`,
+        ``,
+        `| Metric | Status |`,
+        `| --- | --- |`,
+        `| **Current Work** | ${state.currentWork ?? "*(not set)*"} |`,
+        `| **Completed** | ${state.completed.length} |`,
+        `| **Remaining** | ${state.incomplete.length} |`,
+        `| **Attention Items** | ${state.attention} |`,
+        `| **Changed Files** | ${state.changes.filesChanged} |`,
+        ``,
+    ];
+    if (findings.length > 0) {
+        lines.push(`## Findings (${findings.length})`, ``, `| Severity | Check ID | Message | Evidence |`, `| --- | --- | --- | --- |`);
+        for (const f of findings) {
+            const badge = f.severity === "warning" ? "⚠️ Warning" : f.severity === "potential" ? "🔍 Potential" : "ℹ️ Info";
+            const ev = f.evidence.map((e) => (e.path ? `\`${e.path}\`: ${e.detail}` : e.detail)).join("<br/>");
+            lines.push(`| ${badge} | \`${f.id}\`<br/>*${titleCase(f.category)}* | ${f.message} | ${ev || "—"} |`);
+        }
+        lines.push(``);
+    }
+    else {
+        lines.push(`> ✅ **No inconsistencies found across project wiring.**`, ``);
+    }
+    if (interpretation) {
+        lines.push(`## AI Interpretation (${interpretation.provider})`, ``, `> **Confidence:** ${Math.round(interpretation.confidence * 100)}%`, ``, interpretation.summary, ``);
+        if (interpretation.notes.length > 0) {
+            lines.push(`### Key Notes:`);
+            for (const note of interpretation.notes) {
+                lines.push(`- ${note}`);
+            }
+            lines.push(``);
+        }
+    }
+    return lines.join("\n") + "\n";
+}
 function titleCase(s) {
     return s.charAt(0).toUpperCase() + s.slice(1);
 }

package/dist/render/terminal.js.map

@@ -1 +1 @@
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package/dist/types.d.ts

@@ -101,4 +101,13 @@ export interface WorkStateSummary {
     attention: number;
     findingsCount: number;
 }
+export type OutputFormat = "terminal" | "json" | "github" | "markdown";
+export interface CheckOptions {
+    json?: boolean;
+    ai?: boolean;
+    prompt?: string;
+    format?: OutputFormat;
+    maxAttention?: number;
+    failOn?: Severity;
+}
 //# sourceMappingURL=types.d.ts.map