@johnfaleke/fathom 0.2.0 → 0.3.0

package/README.md

@@ -4,7 +4,7 @@
 
 Fathom is a local-first CLI for project Work State. It gives developers a deterministic, evidence-backed view of what is happening in a repo: what is in progress, what has been completed, what changed, and what may be silently broken.
 
-Current release: `0.2.0` — Project Model and opt-in AI interpretation.
+Current release: `0.3.0` — Automation surfaces, CI gating, and GitHub Actions annotations.
 
 ## Why Fathom exists
 
@@ -122,7 +122,8 @@ fathom setup --non-interactive --profile default --provider openai --model gpt-4
 ```
 
 `check --ai` runs deterministic checks first, then adds one clearly labelled
-interpretation using the active profile. It does not silently send anything.
+interpretation using the active profile. The `--ai` flag is the explicit network
+consent boundary; plain `fathom check` never sends project files.
 The lower-level `fathom interpret` command remains available for custom prompts.
 
 Multiple profiles and custom OpenAI-compatible endpoints are supported:
@@ -227,13 +228,81 @@ itself; it is the deliberate release switch.
 
 | Command | Purpose |
 |---------|---------|
-| `fathom init` | Create `.fathom/` for state, config, and event history |
+| `fathom init [--json]` | Create `.fathom/` for state, config, and event history |
 | `fathom set --current ...` | Update current work and task lists |
-| `fathom status` | Show the current project state |
-| `fathom diff` | Show semantic file changes and project impact |
-| `fathom check` | Detect inconsistent or forgotten wiring |
+| `fathom status [--json]` | Show the current project state |
+| `fathom diff [--json]` | Show semantic file changes and project impact |
+| `fathom check [options]` | Detect inconsistent or forgotten wiring |
+| `fathom scan [--json]` | Build the local Project Model in `.fathom/model.json` |
+| `fathom mcp` | Start Model Context Protocol (MCP) stdio server for agents |
+| `fathom setup [options]` | Guided interactive/non-interactive AI profile setup |
+| `fathom config show\|set` | Inspect or update AI profiles without storing keys |
+| `fathom interpret --consent` | Direct AI interpretation with custom prompt |
 
-Add `--json` to any of the reporting commands for machine-readable output.
+## Model Context Protocol (MCP) Server
+
+Fathom includes a built-in standard **Model Context Protocol (MCP)** stdio server. This enables AI coding agents (Claude Desktop, Cursor, Antigravity, Windsurf, Roo Code) to inspect and update Work State directly.
+
+### Tools provided to agents:
+- `fathom_status` — Read active work state, progress, findings, and attention items.
+- `fathom_scan` — Generate and return evidence-backed Project Model.
+- `fathom_check` — Run deterministic checks and return findings with evidence.
+- `fathom_set_work` — Update current work description, completed tasks, and remaining tasks.
+- `fathom_diff` — Read semantic git changes grouped by project area.
+- `fathom_get_model` — Read `.fathom/model.json`.
+
+### MCP Configuration:
+
+Add to `claude_desktop_config.json` or `.cursor/mcp.json`:
+
+```json
+{
+  "mcpServers": {
+    "fathom": {
+      "command": "npx",
+      "args": ["-y", "@johnfaleke/fathom", "mcp"]
+    }
+  }
+}
+```
+
+## CI & Automation
+
+Fathom v0.3 introduces first-class automation surfaces for CI pipelines, PR annotations, and gating.
+
+### GitHub Actions Annotations
+
+Run Fathom in GitHub Actions with `--format github` to annotate PR diffs directly:
+
+```yaml
+- name: Run Fathom Checks
+  run: npx @johnfaleke/fathom check --format github
+```
+
+### CI Gating & Exit Codes
+
+Gate pull requests based on attention thresholds:
+
+```bash
+# Fail if more than 0 attention items exist
+npx @johnfaleke/fathom check --max-attention 0
+
+# Fail if any warning is detected
+npx @johnfaleke/fathom check --fail-on warning
+```
+
+Exit codes:
+- `0`: Success (clean / no gating violations)
+- `1`: Error (uninitialized workspace or invalid configuration)
+- `2`: Findings detected (warnings or attention items exceeding threshold)
+
+### Markdown Report for PR Comments / Step Summary
+
+Output formatted Markdown tables directly into `$GITHUB_STEP_SUMMARY`:
+
+```bash
+npx @johnfaleke/fathom check --format markdown >> $GITHUB_STEP_SUMMARY
+```
 
 ## Example status output
 

package/dist/ai/context.d.ts

@@ -11,4 +11,5 @@ export interface SafeAIContext {
     }>;
 }
 export declare function collectSafeAIContext(ctx: ProjectContext, policy?: AIContextPolicy): Promise<SafeAIContext>;
+export declare function redactSensitiveText(text: string): string;
 //# sourceMappingURL=context.d.ts.map

package/dist/ai/context.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"context.d.ts","sourceRoot":"","sources":["../../src/ai/context.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AASlD,MAAM,WAAW,eAAe;IAC9B,YAAY,CAAC,EAAE,MAAM,EAAE,CAAC;IACxB,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAED,MAAM,WAAW,aAAa;IAC5B,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC9B,QAAQ,EAAE,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,WAAW,GAAG,aAAa,GAAG,WAAW,GAAG,QAAQ,CAAA;KAAE,CAAC,CAAC;CACjG;AAED,wBAAsB,oBAAoB,CACxC,GAAG,EAAE,cAAc,EACnB,MAAM,GAAE,eAAoB,GAC3B,OAAO,CAAC,aAAa,CAAC,CA8BxB;AAED,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAKxD"}

package/dist/ai/context.js

@@ -1,6 +1,9 @@
 const DEFAULT_MAX_FILE_BYTES = 50_000;
 const SENSITIVE_NAME = /(^|\/)(\.env(?:\..*)?|.*\.(?:pem|key|p12|pfx|jks|crt|cer|der)|id_rsa(?:\..*)?|credentials(?:\..*)?|secrets?(?:\..*)?)$/i;
 const BINARY_EXTENSION = /\.(?:png|jpe?g|gif|webp|ico|pdf|zip|tar|gz|7z|woff2?|ttf|mp[34]|mov|avi|db|sqlite)$/i;
+const SECRET_ASSIGNMENT = /((?:api[_-]?key|access[_-]?token|auth[_-]?token|client[_-]?secret|password|passwd|private[_-]?key|secret)\s*["']?\s*[:=]\s*["']?)([^\s"',}\]]+)/gi;
+const BEARER_TOKEN = /(Bearer\s+)[A-Za-z0-9._~+/=-]+/gi;
+const PEM_BLOCK = /-----BEGIN [^-]+-----[\s\S]*?-----END [^-]+-----/g;
 export async function collectSafeAIContext(ctx, policy = {}) {
     const maxFileBytes = policy.maxFileBytes ?? DEFAULT_MAX_FILE_BYTES;
     const allowed = policy.includePaths ? new Set(policy.includePaths) : null;
@@ -26,8 +29,14 @@ export async function collectSafeAIContext(ctx, policy = {}) {
             excluded.push({ path: relPath, reason: "too-large" });
             continue;
         }
-        files[relPath] = text;
+        files[relPath] = redactSensitiveText(text);
     }
     return { files, excluded };
 }
+export function redactSensitiveText(text) {
+    return text
+        .replace(PEM_BLOCK, "[REDACTED_PRIVATE_KEY]")
+        .replace(BEARER_TOKEN, "$1[REDACTED_TOKEN]")
+        .replace(SECRET_ASSIGNMENT, "$1[REDACTED]");
+}
 //# sourceMappingURL=context.js.map

package/dist/ai/context.js.map

@@ -1 +1 @@
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package/dist/ai/openai.d.ts.map

@@ -1 +1 @@
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package/dist/ai/openai.js

@@ -12,7 +12,11 @@ export class OpenAIProvider {
             throw new Error("OpenAI model is required");
         this.apiKey = options.apiKey;
         this.model = options.model;
-        this.baseUrl = (options.baseUrl ?? "https://api.openai.com/v1").replace(/\/$/, "");
+        const baseUrl = new URL(options.baseUrl ?? "https://api.openai.com/v1");
+        if (!['http:', 'https:'].includes(baseUrl.protocol) || baseUrl.username || baseUrl.password) {
+            throw new Error("Provider base URL must be an http(s) URL without embedded credentials");
+        }
+        this.baseUrl = baseUrl.toString().replace(/\/$/, "");
         this.type = options.providerType ?? "openai";
         this.id = this.type;
         this.name = this.type === "custom" ? "Custom OpenAI-compatible provider" : "OpenAI";

package/dist/ai/openai.js.map

@@ -1 +1 @@
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+{"version":3,"file":"openai.js","sourceRoot":"","sources":["../../src/ai/openai.ts"],"names":[],"mappings":"AAkBA,MAAM,OAAO,cAAc;IAChB,EAAE,CAAS;IACX,IAAI,CAAS;IACb,IAAI,CAAe;IAEX,MAAM,CAAS;IACf,KAAK,CAAS;IACd,OAAO,CAAS;IAEjC,YAAY,OAA8B;QACxC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,IAAI,EAAE;YAAE,MAAM,IAAI,KAAK,CAAC,4BAA4B,CAAC,CAAC;QAC1E,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,IAAI,EAAE;YAAE,MAAM,IAAI,KAAK,CAAC,0BAA0B,CAAC,CAAC;QACvE,IAAI,CAAC,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;QAC7B,IAAI,CAAC,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC;QAC3B,MAAM,OAAO,GAAG,IAAI,GAAG,CAAC,OAAO,CAAC,OAAO,IAAI,2BAA2B,CAAC,CAAC;QACxE,IAAI,CAAC,CAAC,OAAO,EAAE,QAAQ,CAAC,CAAC,QAAQ,CAAC,OAAO,CAAC,QAAQ,CAAC,IAAI,OAAO,CAAC,QAAQ,IAAI,OAAO,CAAC,QAAQ,EAAE,CAAC;YAC5F,MAAM,IAAI,KAAK,CAAC,uEAAuE,CAAC,CAAC;QAC3F,CAAC;QACD,IAAI,CAAC,OAAO,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC,OAAO,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC;QACrD,IAAI,CAAC,IAAI,GAAG,OAAO,CAAC,YAAY,IAAI,QAAQ,CAAC;QAC7C,IAAI,CAAC,EAAE,GAAG,IAAI,CAAC,IAAI,CAAC;QACpB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC,IAAI,KAAK,QAAQ,CAAC,CAAC,CAAC,mCAAmC,CAAC,CAAC,CAAC,QAAQ,CAAC;IACtF,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,KAA8B;QAC5C,IAAI,KAAK,CAAC,OAAO,KAAK,IAAI,EAAE,CAAC;YAC3B,MAAM,IAAI,KAAK,CAAC,6DAA6D,CAAC,CAAC;QACjF,CAAC;QAED,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,IAAI,CAAC,OAAO,mBAAmB,EAAE;YAC/D,MAAM,EAAE,MAAM;YACd,OAAO,EAAE;gBACP,aAAa,EAAE,UAAU,IAAI,CAAC,MAAM,EAAE;gBACtC,cAAc,EAAE,kBAAkB;aACnC;YACD,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC;gBACnB,KAAK,EAAE,IAAI,CAAC,KAAK;gBACjB,WAAW,EAAE,CAAC;gBACd,eAAe,EAAE,EAAE,IAAI,EAAE,aAAa,EAAE;gBACxC,QAAQ,EAAE;oBACR;wBACE,IAAI,EAAE,QAAQ;wBACd,OAAO,EACL,yJAAyJ;qBAC5J;oBACD;wBACE,IAAI,EAAE,MAAM;wBACZ,OAAO,EAAE,IAAI,CAAC,SAAS,CAAC;4BACtB,MAAM,EAAE,KAAK,CAAC,MAAM;4BACpB,SAAS,EAAE,KAAK,CAAC,SAAS;4BAC1B,QAAQ,EAAE,KAAK,CAAC,QAAQ;4BACxB,OAAO,EAAE,KAAK,CAAC,OAAO,IAAI,EAAE,KAAK,EAAE,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE;yBACtD,CAAC;qBACH;iBACF;aACF,CAAC;SACH,CAAC,CAAC;QAEH,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;YACjB,MAAM,MAAM,GAAG,CAAC,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;YACrD,MAAM,IAAI,KAAK,CAAC,0BAA0B,QAAQ,CAAC,MAAM,MAAM,MAAM,EAAE,CAAC,CAAC;QAC3E,CAAC;QAED,MAAM,OAAO,GAAG,CAAC,MAAM,QAAQ,CAAC,IAAI,EAAE,CAA2B,CAAC;QAClE,MAAM,OAAO,GAAG,OAAO,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,EAAE,OAAO,EAAE,OAAO,CAAC;QACvD,IAAI,CAAC,OAAO;YAAE,MAAM,IAAI,KAAK,CAAC,iDAAiD,CAAC,CAAC;QAEjF,MAAM,MAAM,GAAG,mBAAmB,CAAC,OAAO,CAAC,CAAC;QAC5C,OAAO;YACL,cAAc,EAAE,IAAI;YACpB,OAAO,EAAE,MAAM,CAAC,OAAO;YACvB,UAAU,EAAE,MAAM,CAAC,UAAU;YAC7B,KAAK,EAAE,MAAM,CAAC,KAAK;YACnB,QAAQ,EAAE,KAAK,CAAC,QAAQ;YACxB,QAAQ,EAAE,IAAI,CAAC,IAAI;SACpB,CAAC;IACJ,CAAC;CACF;AAED,SAAS,mBAAmB,CAAC,OAAe;IAK1C,IAAI,KAAc,CAAC;IACnB,IAAI,CAAC;QACH,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC;IAC9B,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,OAAO,EAAE,OAAO,CAAC,IAAI,EAAE,EAAE,UAAU,EAAE,GAAG,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;IACjE,CAAC;IAED,IAAI,CAAC,KAAK,IAAI,OAAO,KAAK,KAAK,QAAQ;QAAE,MAAM,IAAI,KAAK,CAAC,wCAAwC,CAAC,CAAC;IACnG,MAAM,MAAM,GAAG,KAAgC,CAAC;IAChD,IAAI,OAAO,MAAM,CAAC,OAAO,KAAK,QAAQ;QAAE,MAAM,IAAI,KAAK,CAAC,6CAA6C,CAAC,CAAC;IAEvG,MAAM,UAAU,GAAG,OAAO,MAAM,CAAC,UAAU,KAAK,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,GAAG,CAAC;IACnF,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC;QACvC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,EAAkB,EAAE,CAAC,OAAO,IAAI,KAAK,QAAQ,CAAC;QACzE,CAAC,CAAC,EAAE,CAAC;IAEP,OAAO;QACL,OAAO,EAAE,MAAM,CAAC,OAAO;QACvB,UAAU,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,UAAU,CAAC,CAAC;QAChD,KAAK;KACN,CAAC;AACJ,CAAC"}

package/dist/cli.js

@@ -7,7 +7,8 @@ import { cmdInterpret } from "./commands/interpret.js";
 import { cmdConfig } from "./commands/config.js";
 import { cmdSetup } from "./commands/setup.js";
 import { cmdScan } from "./commands/scan.js";
-const VERSION = "0.2.0";
+import { cmdMCP } from "./commands/mcp.js";
+const VERSION = "0.3.0";
 function printHelp() {
     console.log(`fathom ${VERSION}
 
@@ -17,23 +18,30 @@ Usage:
   fathom <command> [options]
 
 Commands:
-  init                            Initialize Fathom in the current project
+  init [--json]                   Initialize Fathom in the current project
   set [--current <text>] [--complete <item>] [--incomplete <item>] 
                                   Update the active work state
   status [--json]                 Where does the project actually stand?
   diff [--json]                   What meaningfully changed (git-backed in v0.1)
-  check [--json]                  Find inconsistencies and forgotten wiring
-  check --ai [--json]             Add opt-in provider interpretation
-  config show                     Show local configuration
-  config set <key> <value>        Update AI profile configuration
-  setup                           Guided AI setup for this workspace
+  check [options]                 Find inconsistencies and forgotten wiring
+  check --ai [options]            Add opt-in provider interpretation
+  config show [--json]            Show local configuration
+  config set <key> <value> [--json]
+                                  Update AI profile configuration
+  setup [options]                 Guided AI setup for this workspace
   scan [--json]                   Build the local Project Model
-  interpret --provider openai
-                                  Opt-in AI interpretation with explicit consent
+  mcp                             Start Model Context Protocol (MCP) stdio server
+  interpret --provider openai     Opt-in AI interpretation with explicit consent
+
+Automation & CI Options:
+  --json                          Emit machine-readable JSON output
+  --format <type>                 Output format: terminal | json | github | markdown
+  --max-attention <number>        CI gating: fail if attention items exceed threshold
+  --fail-on <severity>            CI gating: fail on severity: info | potential | warning
 
 Options:
-  -h, --help        Show help
-  -v, --version     Show version
+  -h, --help                      Show help
+  -v, --version                   Show version
 `);
 }
 async function main() {
@@ -41,6 +49,10 @@ async function main() {
     const command = args[0];
     const statusOptions = parseStatusOptions(args.slice(1));
     const json = statusOptions.json || args.includes("--json");
+    const format = parseFormatOption(args.slice(1), json);
+    const maxAttentionRaw = parseOption(args.slice(1), "--max-attention");
+    const maxAttention = maxAttentionRaw !== undefined ? Number(maxAttentionRaw) : undefined;
+    const failOn = parseOption(args.slice(1), "--fail-on");
     if (!command || command === "-h" || command === "--help") {
         printHelp();
         return;
@@ -51,7 +63,7 @@ async function main() {
     }
     switch (command) {
         case "init":
-            process.exitCode = await cmdInit(process.cwd());
+            process.exitCode = await cmdInit(process.cwd(), { json });
             break;
         case "set":
             process.exitCode = await cmdStatus(process.cwd(), {
@@ -75,6 +87,9 @@ async function main() {
         case "check":
             process.exitCode = await cmdCheck(process.cwd(), {
                 json,
+                format,
+                maxAttention,
+                failOn,
                 ai: args.includes("--ai"),
                 prompt: parseOption(args.slice(1), "--prompt"),
             });
@@ -90,11 +105,15 @@ async function main() {
                 baseUrl: parseOption(args.slice(1), "--base-url"),
                 apiKeyEnv: parseOption(args.slice(1), "--api-key-env"),
                 nonInteractive: args.includes("--non-interactive"),
+                json,
             });
             break;
         case "scan":
             process.exitCode = await cmdScan(process.cwd(), { json });
             break;
+        case "mcp":
+            process.exitCode = await cmdMCP(process.cwd());
+            break;
         case "interpret":
             process.exitCode = await cmdInterpret(process.cwd(), {
                 json,
@@ -160,6 +179,13 @@ function parseOption(args, option) {
     const value = index >= 0 ? args[index + 1] : undefined;
     return value && !value.startsWith("--") ? value : undefined;
 }
+function parseFormatOption(args, json) {
+    const raw = parseOption(args, "--format");
+    if (raw === "json" || raw === "github" || raw === "markdown" || raw === "terminal") {
+        return raw;
+    }
+    return json ? "json" : "terminal";
+}
 main().catch((err) => {
     console.error(err);
     process.exitCode = 1;

package/dist/cli.js.map

@@ -1 +1 @@
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package/dist/commands/check.d.ts

@@ -1,6 +1,3 @@
-export declare function cmdCheck(cwd: string, opts?: {
-    json?: boolean;
-    ai?: boolean;
-    prompt?: string;
-}): Promise<number>;
+import type { CheckOptions } from "../types.js";
+export declare function cmdCheck(cwd: string, opts?: CheckOptions): Promise<number>;
 //# sourceMappingURL=check.d.ts.map

package/dist/commands/check.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"check.d.ts","sourceRoot":"","sources":["../../src/commands/check.ts"],"names":[],"mappings":"AAeA,wBAAsB,QAAQ,CAC5B,GAAG,EAAE,MAAM,EACX,IAAI,GAAE;IAAE,IAAI,CAAC,EAAE,OAAO,CAAC;IAAC,EAAE,CAAC,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,CAAA;CAAO,GAC3D,OAAO,CAAC,MAAM,CAAC,CAuCjB"}
+{"version":3,"file":"check.d.ts","sourceRoot":"","sources":["../../src/commands/check.ts"],"names":[],"mappings":"AAkBA,OAAO,KAAK,EAAE,YAAY,EAAY,MAAM,aAAa,CAAC;AAG1D,wBAAsB,QAAQ,CAC5B,GAAG,EAAE,MAAM,EACX,IAAI,GAAE,YAAiB,GACtB,OAAO,CAAC,MAAM,CAAC,CA6FjB"}

package/dist/commands/check.js

@@ -3,12 +3,17 @@ import { builtinChecks } from "../checks/index.js";
 import { createProjectContext } from "../core/project.js";
 import { runChecks } from "../core/runner.js";
 import { appendEvent, applyFindings, isInitialized, loadConfig, loadState, saveState, } from "../core/storage.js";
-import { renderFindings, renderInterpretation } from "../render/terminal.js";
+import { renderFindings, renderGitHubAnnotations, renderInterpretation, renderMarkdownSummary, } from "../render/terminal.js";
 import { interpretProject } from "./interpret.js";
 export async function cmdCheck(cwd, opts = {}) {
     const root = path.resolve(cwd);
     if (!(await isInitialized(root))) {
-        console.error("Fathom is not initialized. Run `fathom init` first.");
+        if (opts.format === "json" || opts.json) {
+            console.error(JSON.stringify({ error: "Fathom is not initialized. Run `fathom init` first." }));
+        }
+        else {
+            console.error("Fathom is not initialized. Run `fathom init` first.");
+        }
         return 1;
     }
     const config = await loadConfig(root);
@@ -24,21 +29,80 @@ export async function cmdCheck(cwd, opts = {}) {
     });
     let interpretation;
     if (opts.ai) {
+        if (config.ai?.enabled !== true) {
+            const msg = "AI interpretation is not configured for this workspace.\nRun `fathom setup` first, then review the profile before using `fathom check --ai`.";
+            if (opts.format === "json" || opts.json) {
+                console.error(JSON.stringify({ error: msg }));
+            }
+            else {
+                console.error(msg);
+            }
+            return 1;
+        }
         try {
             interpretation = await interpretProject(root, config, opts.prompt);
         }
         catch (error) {
-            console.error(error instanceof Error ? error.message : String(error));
+            const errMsg = error instanceof Error ? error.message : String(error);
+            if (opts.format === "json" || opts.json) {
+                console.error(JSON.stringify({ error: errMsg }));
+            }
+            else {
+                console.error(errMsg);
+            }
             return 1;
         }
     }
-    if (opts.json) {
-        console.log(JSON.stringify({ findings, attention: state.attention, interpretation: interpretation ? { ...interpretation.result, context: { filesIncluded: Object.keys(interpretation.context.files), excluded: interpretation.context.excluded } } : undefined }, null, 2));
+    const format = opts.format ?? (opts.json ? "json" : "terminal");
+    switch (format) {
+        case "json":
+            console.log(JSON.stringify({
+                findings,
+                attention: state.attention,
+                interpretation: interpretation
+                    ? {
+                        ...interpretation.result,
+                        context: {
+                            filesIncluded: Object.keys(interpretation.context.files),
+                            excluded: interpretation.context.excluded,
+                        },
+                    }
+                    : undefined,
+            }, null, 2));
+            break;
+        case "github":
+            process.stdout.write(renderGitHubAnnotations(findings));
+            process.stdout.write(renderFindings(findings));
+            if (interpretation) {
+                process.stdout.write(renderInterpretation(interpretation.result, interpretation.context));
+            }
+            break;
+        case "markdown":
+            process.stdout.write(renderMarkdownSummary(state, findings, interpretation?.result));
+            break;
+        case "terminal":
+        default:
+            process.stdout.write(renderFindings(findings));
+            if (interpretation) {
+                process.stdout.write(renderInterpretation(interpretation.result, interpretation.context));
+            }
+            break;
+    }
+    return evaluateGating(state.attention, findings, opts);
+}
+function evaluateGating(attention, findings, opts) {
+    if (opts.maxAttention !== undefined) {
+        if (attention > opts.maxAttention)
+            return 2;
+        return 0;
     }
-    else {
-        process.stdout.write(renderFindings(findings));
-        if (interpretation)
-            process.stdout.write(renderInterpretation(interpretation.result, interpretation.context));
+    if (opts.failOn) {
+        const severities = opts.failOn === "info"
+            ? ["info", "potential", "warning"]
+            : opts.failOn === "potential"
+                ? ["potential", "warning"]
+                : ["warning"];
+        return findings.some((f) => severities.includes(f.severity)) ? 2 : 0;
     }
     return findings.some((f) => f.severity === "warning") ? 2 : 0;
 }

package/dist/commands/check.js.map

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+{"version":3,"file":"check.js","sourceRoot":"","sources":["../../src/commands/check.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EAAE,aAAa,EAAE,MAAM,oBAAoB,CAAC;AACnD,OAAO,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAC;AAC1D,OAAO,EAAE,SAAS,EAAE,MAAM,mBAAmB,CAAC;AAC9C,OAAO,EACL,WAAW,EACX,aAAa,EACb,aAAa,EACb,UAAU,EACV,SAAS,EACT,SAAS,GACV,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EACL,cAAc,EACd,uBAAuB,EACvB,oBAAoB,EACpB,qBAAqB,GACtB,MAAM,uBAAuB,CAAC;AAE/B,OAAO,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AAElD,MAAM,CAAC,KAAK,UAAU,QAAQ,CAC5B,GAAW,EACX,OAAqB,EAAE;IAEvB,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;IAE/B,IAAI,CAAC,CAAC,MAAM,aAAa,CAAC,IAAI,CAAC,CAAC,EAAE,CAAC;QACjC,IAAI,IAAI,CAAC,MAAM,KAAK,MAAM,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;YACxC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,KAAK,EAAE,qDAAqD,EAAE,CAAC,CAAC,CAAC;QAClG,CAAC;aAAM,CAAC;YACN,OAAO,CAAC,KAAK,CAAC,qDAAqD,CAAC,CAAC;QACvE,CAAC;QACD,OAAO,CAAC,CAAC;IACX,CAAC;IAED,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,IAAI,CAAC,CAAC;IACtC,MAAM,GAAG,GAAG,MAAM,oBAAoB,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;IACrD,MAAM,QAAQ,GAAG,MAAM,SAAS,CAAC,GAAG,EAAE,aAAa,CAAC,CAAC;IAErD,IAAI,KAAK,GAAG,MAAM,SAAS,CAAC,IAAI,CAAC,CAAC;IAClC,KAAK,GAAG,aAAa,CAAC,KAAK,EAAE,QAAQ,CAAC,CAAC;IACvC,MAAM,SAAS,CAAC,IAAI,EAAE,KAAK,CAAC,CAAC;IAC7B,MAAM,WAAW,CAAC,IAAI,EAAE;QACtB,IAAI,EAAE,OAAO;QACb,EAAE,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;QAC5B,YAAY,EAAE,QAAQ,CAAC,MAAM;KAC9B,CAAC,CAAC;IAEH,IAAI,cAAc,CAAC;IACnB,IAAI,IAAI,CAAC,EAAE,EAAE,CAAC;QACZ,IAAI,MAAM,CAAC,EAAE,EAAE,OAAO,KAAK,IAAI,EAAE,CAAC;YAChC,MAAM,GAAG,GAAG,8IAA8I,CAAC;YAC3J,IAAI,IAAI,CAAC,MAAM,KAAK,MAAM,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;gBACxC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,KAAK,EAAE,GAAG,EAAE,CAAC,CAAC,CAAC;YAChD,CAAC;iBAAM,CAAC;gBACN,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;YACrB,CAAC;YACD,OAAO,CAAC,CAAC;QACX,CAAC;QACD,IAAI,CAAC;YACH,cAAc,GAAG,MAAM,gBAAgB,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,CAAC,MAAM,CAAC,CAAC;QACrE,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,MAAM,MAAM,GAAG,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;YACtE,IAAI,IAAI,CAAC,MAAM,KAAK,MAAM,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;gBACxC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,KAAK,EAAE,MAAM,EAAE,CAAC,CAAC,CAAC;YACnD,CAAC;iBAAM,CAAC;gBACN,OAAO,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;YACxB,CAAC;YACD,OAAO,CAAC,CAAC;QACX,CAAC;IACH,CAAC;IAED,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC;IAEhE,QAAQ,MAAM,EAAE,CAAC;QACf,KAAK,MAAM;YACT,OAAO,CAAC,GAAG,CACT,IAAI,CAAC,SAAS,CACZ;gBACE,QAAQ;gBACR,SAAS,EAAE,KAAK,CAAC,SAAS;gBAC1B,cAAc,EAAE,cAAc;oBAC5B,CAAC,CAAC;wBACE,GAAG,cAAc,CAAC,MAAM;wBACxB,OAAO,EAAE;4BACP,aAAa,EAAE,MAAM,CAAC,IAAI,CAAC,cAAc,CAAC,OAAO,CAAC,KAAK,CAAC;4BACxD,QAAQ,EAAE,cAAc,CAAC,OAAO,CAAC,QAAQ;yBAC1C;qBACF;oBACH,CAAC,CAAC,SAAS;aACd,EACD,IAAI,EACJ,CAAC,CACF,CACF,CAAC;YACF,MAAM;QACR,KAAK,QAAQ;YACX,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,uBAAuB,CAAC,QAAQ,CAAC,CAAC,CAAC;YACxD,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,cAAc,CAAC,QAAQ,CAAC,CAAC,CAAC;YAC/C,IAAI,cAAc,EAAE,CAAC;gBACnB,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,oBAAoB,CAAC,cAAc,CAAC,MAAM,EAAE,cAAc,CAAC,OAAO,CAAC,CAAC,CAAC;YAC5F,CAAC;YACD,MAAM;QACR,KAAK,UAAU;YACb,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,qBAAqB,CAAC,KAAK,EAAE,QAAQ,EAAE,cAAc,EAAE,MAAM,CAAC,CAAC,CAAC;YACrF,MAAM;QACR,KAAK,UAAU,CAAC;QAChB;YACE,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,cAAc,CAAC,QAAQ,CAAC,CAAC,CAAC;YAC/C,IAAI,cAAc,EAAE,CAAC;gBACnB,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,oBAAoB,CAAC,cAAc,CAAC,MAAM,EAAE,cAAc,CAAC,OAAO,CAAC,CAAC,CAAC;YAC5F,CAAC;YACD,MAAM;IACV,CAAC;IAED,OAAO,cAAc,CAAC,KAAK,CAAC,SAAS,EAAE,QAAQ,EAAE,IAAI,CAAC,CAAC;AACzD,CAAC;AAED,SAAS,cAAc,CAAC,SAAiB,EAAE,QAAuC,EAAE,IAAkB;IACpG,IAAI,IAAI,CAAC,YAAY,KAAK,SAAS,EAAE,CAAC;QACpC,IAAI,SAAS,GAAG,IAAI,CAAC,YAAY;YAAE,OAAO,CAAC,CAAC;QAC5C,OAAO,CAAC,CAAC;IACX,CAAC;IAED,IAAI,IAAI,CAAC,MAAM,EAAE,CAAC;QAChB,MAAM,UAAU,GAAe,IAAI,CAAC,MAAM,KAAK,MAAM;YACnD,CAAC,CAAC,CAAC,MAAM,EAAE,WAAW,EAAE,SAAS,CAAC;YAClC,CAAC,CAAC,IAAI,CAAC,MAAM,KAAK,WAAW;gBAC7B,CAAC,CAAC,CAAC,WAAW,EAAE,SAAS,CAAC;gBAC1B,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;QAChB,OAAO,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACvE,CAAC;IAED,OAAO,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;AAChE,CAAC"}

package/dist/commands/config.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../../src/commands/config.ts"],"names":[],"mappings":"AAKA,wBAAsB,SAAS,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,CAoB5E"}
+{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../../src/commands/config.ts"],"names":[],"mappings":"AAKA,wBAAsB,SAAS,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC,CAwC5E"}

package/dist/commands/config.js

@@ -3,22 +3,42 @@ import { isInitialized, loadConfig, fathomPaths } from "../core/storage.js";
 import { writeFile } from "node:fs/promises";
 export async function cmdConfig(cwd, args) {
     const root = path.resolve(cwd);
+    const isJson = args.includes("--json");
+    const filteredArgs = args.filter((a) => a !== "--json");
     if (!(await isInitialized(root))) {
-        console.error("Fathom is not initialized. Run `fathom init` first.");
+        if (isJson) {
+            console.error(JSON.stringify({ error: "Fathom is not initialized. Run `fathom init` first." }));
+        }
+        else {
+            console.error("Fathom is not initialized. Run `fathom init` first.");
+        }
         return 1;
     }
-    if (args[0] === "show") {
+    if (filteredArgs[0] === "show") {
         console.log(JSON.stringify(await loadConfig(root), null, 2));
         return 0;
     }
-    if (args[0] !== "set" || !args[1] || args[2] === undefined) {
-        console.error("Usage: fathom config show | fathom config set <key> <value>");
+    if (filteredArgs[0] !== "set" || !filteredArgs[1] || filteredArgs[2] === undefined) {
+        if (isJson) {
+            console.error(JSON.stringify({ error: "Usage: fathom config show | fathom config set <key> <value>" }));
+        }
+        else {
+            console.error("Usage: fathom config show | fathom config set <key> <value>");
+        }
         return 1;
     }
+    const key = filteredArgs[1];
+    const rawValue = filteredArgs.slice(2).join(" ");
+    const parsedValue = parseValue(rawValue);
     const config = await loadConfig(root);
-    setConfigValue(config, args[1], parseValue(args.slice(2).join(" ")));
+    setConfigValue(config, key, parsedValue);
     await writeFile(fathomPaths(root).config, JSON.stringify(config, null, 2) + "\n", "utf8");
-    console.log(`Updated ${args[1]}.`);
+    if (isJson) {
+        console.log(JSON.stringify({ success: true, key, value: parsedValue }, null, 2));
+    }
+    else {
+        console.log(`Updated ${key}.`);
+    }
     return 0;
 }
 function setConfigValue(config, key, value) {

package/dist/commands/config.js.map

@@ -1 +1 @@
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+{"version":3,"file":"config.js","sourceRoot":"","sources":["../../src/commands/config.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EAAE,aAAa,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAC;AAE5E,OAAO,EAAY,SAAS,EAAE,MAAM,kBAAkB,CAAC;AAEvD,MAAM,CAAC,KAAK,UAAU,SAAS,CAAC,GAAW,EAAE,IAAc;IACzD,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;IAC/B,MAAM,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC;IACvC,MAAM,YAAY,GAAG,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,KAAK,QAAQ,CAAC,CAAC;IAExD,IAAI,CAAC,CAAC,MAAM,aAAa,CAAC,IAAI,CAAC,CAAC,EAAE,CAAC;QACjC,IAAI,MAAM,EAAE,CAAC;YACX,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,KAAK,EAAE,qDAAqD,EAAE,CAAC,CAAC,CAAC;QAClG,CAAC;aAAM,CAAC;YACN,OAAO,CAAC,KAAK,CAAC,qDAAqD,CAAC,CAAC;QACvE,CAAC;QACD,OAAO,CAAC,CAAC;IACX,CAAC;IACD,IAAI,YAAY,CAAC,CAAC,CAAC,KAAK,MAAM,EAAE,CAAC;QAC/B,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,UAAU,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;QAC7D,OAAO,CAAC,CAAC;IACX,CAAC;IACD,IAAI,YAAY,CAAC,CAAC,CAAC,KAAK,KAAK,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC,IAAI,YAAY,CAAC,CAAC,CAAC,KAAK,SAAS,EAAE,CAAC;QACnF,IAAI,MAAM,EAAE,CAAC;YACX,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,KAAK,EAAE,6DAA6D,EAAE,CAAC,CAAC,CAAC;QAC1G,CAAC;aAAM,CAAC;YACN,OAAO,CAAC,KAAK,CAAC,6DAA6D,CAAC,CAAC;QAC/E,CAAC;QACD,OAAO,CAAC,CAAC;IACX,CAAC;IAED,MAAM,GAAG,GAAG,YAAY,CAAC,CAAC,CAAC,CAAC;IAC5B,MAAM,QAAQ,GAAG,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IACjD,MAAM,WAAW,GAAG,UAAU,CAAC,QAAQ,CAAC,CAAC;IAEzC,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,IAAI,CAAC,CAAC;IACtC,cAAc,CAAC,MAAM,EAAE,GAAG,EAAE,WAAW,CAAC,CAAC;IACzC,MAAM,SAAS,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC,MAAM,EAAE,IAAI,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC,GAAG,IAAI,EAAE,MAAM,CAAC,CAAC;IAE1F,IAAI,MAAM,EAAE,CAAC;QACX,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,OAAO,EAAE,IAAI,EAAE,GAAG,EAAE,KAAK,EAAE,WAAW,EAAE,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;IACnF,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,GAAG,CAAC,WAAW,GAAG,GAAG,CAAC,CAAC;IACjC,CAAC;IACD,OAAO,CAAC,CAAC;AACX,CAAC;AAED,SAAS,cAAc,CAAC,MAAoB,EAAE,GAAW,EAAE,KAAc;IACvE,MAAM,KAAK,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;IAC7C,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,IAAI,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC1C,MAAM,IAAI,KAAK,CAAC,6CAA6C,CAAC,CAAC;IACjE,CAAC;IACD,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,SAAS,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,SAAS,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,cAAc,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,cAAc,EAAE,CAAC;QACnH,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,KAAc,CAAC;QAC9C,OAAO;IACT,CAAC;IACD,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,UAAU,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC;QACtD,MAAM,IAAI,KAAK,CAAC,2DAA2D,CAAC,CAAC;IAC/E,CAAC;IACD,MAAM,QAAQ,GAAG,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,CAAC,CAAC,QAAQ,KAAK,EAAE,CAAC;IACpD,MAAM,OAAO,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,EAAE,QAAQ,EAAE,QAAQ,EAAE,KAAK,EAAE,aAAa,EAAE,CAAC;IACpF,IAAI,CAAC,CAAC,UAAU,EAAE,OAAO,EAAE,SAAS,EAAE,WAAW,EAAE,cAAc,EAAE,cAAc,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;QACtG,MAAM,IAAI,KAAK,CAAC,6BAA6B,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;IAC3D,CAAC;IACA,OAAmC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC;AACzD,CAAC;AAED,SAAS,UAAU,CAAC,KAAa;IAC/B,IAAI,CAAC;QACH,OAAO,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IAC3B,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC"}

package/dist/commands/init.d.ts

@@ -1,2 +1,4 @@
-export declare function cmdInit(cwd: string): Promise<number>;
+export declare function cmdInit(cwd: string, opts?: {
+    json?: boolean;
+}): Promise<number>;
 //# sourceMappingURL=init.d.ts.map

package/dist/commands/init.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/commands/init.ts"],"names":[],"mappings":"AAOA,wBAAsB,OAAO,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAc1D"}
+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/commands/init.ts"],"names":[],"mappings":"AAOA,wBAAsB,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,GAAE;IAAE,IAAI,CAAC,EAAE,OAAO,CAAA;CAAO,GAAG,OAAO,CAAC,MAAM,CAAC,CAuBzF"}

package/dist/commands/init.js

@@ -1,16 +1,27 @@
 import path from "node:path";
 import { initFathom, isInitialized, fathomPaths, } from "../core/storage.js";
-export async function cmdInit(cwd) {
+export async function cmdInit(cwd, opts = {}) {
     const root = path.resolve(cwd);
+    const paths = fathomPaths(root);
     if (await isInitialized(root)) {
-        console.log(`Fathom already initialized at ${fathomPaths(root).dir}`);
+        if (opts.json) {
+            console.log(JSON.stringify({ initialized: true, alreadyExisted: true, root, paths }, null, 2));
+        }
+        else {
+            console.log(`Fathom already initialized at ${paths.dir}`);
+        }
         return 0;
     }
     await initFathom(root);
-    console.log(`Initialized Fathom in ${fathomPaths(root).dir}`);
-    console.log(`  state.json   — current Work State`);
-    console.log(`  events.jsonl — append-only observations`);
-    console.log(`  config.json  — local configuration`);
+    if (opts.json) {
+        console.log(JSON.stringify({ initialized: true, alreadyExisted: false, root, paths }, null, 2));
+    }
+    else {
+        console.log(`Initialized Fathom in ${paths.dir}`);
+        console.log(`  state.json   — current Work State`);
+        console.log(`  events.jsonl — append-only observations`);
+        console.log(`  config.json  — local configuration`);
+    }
     return 0;
 }
 //# sourceMappingURL=init.js.map

package/dist/commands/init.js.map

@@ -1 +1 @@
-{"version":3,"file":"init.js","sourceRoot":"","sources":["../../src/commands/init.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EACL,UAAU,EACV,aAAa,EACb,WAAW,GACZ,MAAM,oBAAoB,CAAC;AAE5B,MAAM,CAAC,KAAK,UAAU,OAAO,CAAC,GAAW;IACvC,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;IAE/B,IAAI,MAAM,aAAa,CAAC,IAAI,CAAC,EAAE,CAAC;QAC9B,OAAO,CAAC,GAAG,CAAC,iCAAiC,WAAW,CAAC,IAAI,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC;QACtE,OAAO,CAAC,CAAC;IACX,CAAC;IAED,MAAM,UAAU,CAAC,IAAI,CAAC,CAAC;IACvB,OAAO,CAAC,GAAG,CAAC,yBAAyB,WAAW,CAAC,IAAI,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC;IAC9D,OAAO,CAAC,GAAG,CAAC,qCAAqC,CAAC,CAAC;IACnD,OAAO,CAAC,GAAG,CAAC,2CAA2C,CAAC,CAAC;IACzD,OAAO,CAAC,GAAG,CAAC,sCAAsC,CAAC,CAAC;IACpD,OAAO,CAAC,CAAC;AACX,CAAC"}
+{"version":3,"file":"init.js","sourceRoot":"","sources":["../../src/commands/init.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAC;AAC7B,OAAO,EACL,UAAU,EACV,aAAa,EACb,WAAW,GACZ,MAAM,oBAAoB,CAAC;AAE5B,MAAM,CAAC,KAAK,UAAU,OAAO,CAAC,GAAW,EAAE,OAA2B,EAAE;IACtE,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;IAC/B,MAAM,KAAK,GAAG,WAAW,CAAC,IAAI,CAAC,CAAC;IAEhC,IAAI,MAAM,aAAa,CAAC,IAAI,CAAC,EAAE,CAAC;QAC9B,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;YACd,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,WAAW,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE,IAAI,EAAE,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;QACjG,CAAC;aAAM,CAAC;YACN,OAAO,CAAC,GAAG,CAAC,iCAAiC,KAAK,CAAC,GAAG,EAAE,CAAC,CAAC;QAC5D,CAAC;QACD,OAAO,CAAC,CAAC;IACX,CAAC;IAED,MAAM,UAAU,CAAC,IAAI,CAAC,CAAC;IACvB,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;QACd,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,WAAW,EAAE,IAAI,EAAE,cAAc,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC;IAClG,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,GAAG,CAAC,yBAAyB,KAAK,CAAC,GAAG,EAAE,CAAC,CAAC;QAClD,OAAO,CAAC,GAAG,CAAC,qCAAqC,CAAC,CAAC;QACnD,OAAO,CAAC,GAAG,CAAC,2CAA2C,CAAC,CAAC;QACzD,OAAO,CAAC,GAAG,CAAC,sCAAsC,CAAC,CAAC;IACtD,CAAC;IACD,OAAO,CAAC,CAAC;AACX,CAAC"}

package/dist/commands/mcp.d.ts

@@ -0,0 +1,2 @@
+export declare function cmdMCP(cwd: string): Promise<number>;
+//# sourceMappingURL=mcp.d.ts.map

package/dist/commands/mcp.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"mcp.d.ts","sourceRoot":"","sources":["../../src/commands/mcp.ts"],"names":[],"mappings":"AAGA,wBAAsB,MAAM,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAKzD"}

package/dist/commands/mcp.js

@@ -0,0 +1,9 @@
+import path from "node:path";
+import { FathomMCPServer } from "../mcp/server.js";
+export async function cmdMCP(cwd) {
+    const root = path.resolve(cwd);
+    const server = new FathomMCPServer(root);
+    await server.start();
+    return 0;
+}
+//# sourceMappingURL=mcp.js.map