@jcode.labs/ragmir 6.1.6 → 6.2.1

package/dist/git-hooks.js

@@ -0,0 +1,173 @@
+import { execFile } from "node:child_process";
+import { existsSync } from "node:fs";
+import { chmod, mkdir, readFile, realpath, rm, writeFile } from "node:fs/promises";
+import path from "node:path";
+import { RAGMIR_DIR } from "./defaults.js";
+import { RGR_RUNNER_FILENAME } from "./package-manager.js";
+import { canonicalSourcePath } from "./source-paths.js";
+export const GIT_HOOK_NAMES = [
+    "post-checkout",
+    "post-commit",
+    "post-merge",
+    "post-rewrite",
+];
+const BLOCK_START = "# >>> ragmir auto-ingest >>>";
+const BLOCK_END = "# <<< ragmir auto-ingest <<<";
+const SHEBANG = "#!/bin/sh";
+/**
+ * Refresh the index in the background after Git changes files: commits, merges, checkouts, and
+ * rebases. Each hook gets one marked block, existing hook content is preserved, and the block runs
+ * the project's generated runner so it uses the same Ragmir version as the agents.
+ */
+export async function installGitHooks(options = {}) {
+    const location = await gitHooksLocation(options.cwd);
+    if (location.trackedHooksDir && options.force !== true) {
+        throw new Error(`Git hooks resolve to ${location.hooksDir}, inside the working tree (for example a husky directory). Add the Ragmir block to that tool's hook files, or rerun with --force to edit them.`);
+    }
+    await mkdir(location.hooksDir, { recursive: true });
+    const changed = [];
+    for (const hookName of GIT_HOOK_NAMES) {
+        const hookPath = path.join(location.hooksDir, hookName);
+        const current = existsSync(hookPath) ? await readFile(hookPath, "utf8") : null;
+        const next = withRagmirBlock(current, ragmirHookBlock(location.projectPath));
+        if (next !== current) {
+            await writeFile(hookPath, next, "utf8");
+            changed.push(hookName);
+        }
+        if (process.platform !== "win32") {
+            await chmod(hookPath, 0o755);
+        }
+    }
+    return reportFor(location, changed);
+}
+export async function uninstallGitHooks(options = {}) {
+    const location = await gitHooksLocation(options.cwd);
+    const changed = [];
+    for (const hookName of GIT_HOOK_NAMES) {
+        const hookPath = path.join(location.hooksDir, hookName);
+        if (!existsSync(hookPath)) {
+            continue;
+        }
+        const current = await readFile(hookPath, "utf8");
+        const next = withoutRagmirBlock(current);
+        if (next === current) {
+            continue;
+        }
+        if (next.replace(SHEBANG, "").trim().length === 0) {
+            await rm(hookPath, { force: true });
+        }
+        else {
+            await writeFile(hookPath, next, "utf8");
+        }
+        changed.push(hookName);
+    }
+    return reportFor(location, changed);
+}
+export async function gitHooksStatus(options = {}) {
+    return reportFor(await gitHooksLocation(options.cwd), []);
+}
+async function gitHooksLocation(cwd = process.cwd()) {
+    // Git reports real paths (macOS resolves /var to /private/var), so compare real paths too.
+    const projectRoot = await realpath(path.resolve(cwd));
+    const workTree = path.resolve((await git(projectRoot, ["rev-parse", "--show-toplevel"])).trim() || projectRoot);
+    // Resolves core.hooksPath and linked worktrees the way Git itself does.
+    const hooksPath = (await git(projectRoot, ["rev-parse", "--git-path", "hooks"])).trim();
+    const hooksDir = path.resolve(projectRoot, hooksPath);
+    const gitDir = path.resolve(projectRoot, (await git(projectRoot, ["rev-parse", "--git-common-dir"])).trim());
+    const insideWorkTree = isInside(hooksDir, workTree);
+    const insideGitDir = isInside(hooksDir, gitDir);
+    return {
+        hooksDir,
+        workTree,
+        trackedHooksDir: insideWorkTree && !insideGitDir,
+        projectPath: canonicalSourcePath(path.relative(workTree, projectRoot)) || ".",
+    };
+}
+function ragmirHookBlock(projectPath) {
+    const runner = `${RAGMIR_DIR}/${RGR_RUNNER_FILENAME}`;
+    return [
+        BLOCK_START,
+        "# Refresh the Ragmir index in the background after Git changes files.",
+        "# Remove with `rgr hooks uninstall`.",
+        `(cd ${shellQuote(projectPath)} 2>/dev/null && [ -f ${runner} ] && command -v node >/dev/null 2>&1 && node ${runner} ingest >/dev/null 2>&1 &) || true`,
+        BLOCK_END,
+    ].join("\n");
+}
+function withRagmirBlock(current, block) {
+    if (current === null || current.trim().length === 0) {
+        return `${SHEBANG}\n\n${block}\n`;
+    }
+    if (current.includes(BLOCK_START)) {
+        return replaceBlock(current, block);
+    }
+    const lines = current.replace(/\s+$/u, "").split("\n");
+    // A hook that ends with `exit` would never reach an appended block.
+    const lastLine = lines.at(-1)?.trim() ?? "";
+    if (/^exit(\s|$)/u.test(lastLine)) {
+        return [...lines.slice(0, -1), "", block, lines.at(-1), ""].join("\n");
+    }
+    return `${lines.join("\n")}\n\n${block}\n`;
+}
+function withoutRagmirBlock(current) {
+    let start = current.indexOf(BLOCK_START);
+    if (start === -1) {
+        return current;
+    }
+    const endMarker = current.indexOf(BLOCK_END, start);
+    let end = endMarker === -1 ? current.length : endMarker + BLOCK_END.length;
+    // Drop the blank separator line and the newline that installation added around the block.
+    if (current.slice(start - 2, start) === "\n\n") {
+        start -= 1;
+    }
+    if (current[end] === "\n") {
+        end += 1;
+    }
+    return `${current.slice(0, start)}${current.slice(end)}`;
+}
+function replaceBlock(current, block) {
+    const start = current.indexOf(BLOCK_START);
+    const endMarker = current.indexOf(BLOCK_END, start);
+    const end = endMarker === -1 ? current.length : endMarker + BLOCK_END.length;
+    return `${current.slice(0, start)}${block}${current.slice(end)}`;
+}
+async function reportFor(location, changed) {
+    const installed = [];
+    const missing = [];
+    for (const hookName of GIT_HOOK_NAMES) {
+        const hookPath = path.join(location.hooksDir, hookName);
+        const content = existsSync(hookPath) ? await readFile(hookPath, "utf8") : "";
+        if (content.includes(BLOCK_START)) {
+            installed.push(hookName);
+        }
+        else {
+            missing.push(hookName);
+        }
+    }
+    return {
+        hooksDir: location.hooksDir,
+        workTree: location.workTree,
+        trackedHooksDir: location.trackedHooksDir,
+        installed,
+        missing,
+        changed,
+    };
+}
+function isInside(child, parent) {
+    const relative = path.relative(parent, child);
+    return relative !== ".." && !relative.startsWith(`..${path.sep}`) && !path.isAbsolute(relative);
+}
+function shellQuote(value) {
+    return `'${value.replaceAll("'", "'\\''")}'`;
+}
+function git(cwd, args) {
+    return new Promise((resolve, reject) => {
+        execFile("git", args, { cwd, encoding: "utf8", windowsHide: true }, (error, stdout) => {
+            if (error) {
+                reject(new Error(`Git hooks need a Git repository and the git command (${error.message.split("\n")[0]}).`));
+                return;
+            }
+            resolve(stdout);
+        });
+    });
+}
+//# sourceMappingURL=git-hooks.js.map

package/dist/git-hooks.js.map

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package/dist/index-diagnostics.d.ts

@@ -1,4 +1,4 @@
-import type { Config, IndexManifest } from "./types.js";
+import type { Config, IndexConcentration, IndexManifest } from "./types.js";
 /**
  * Bumped when the index layout or manifest meaning changes in a way that
  * invalidates previously indexed vectors (new columns, changed semantics, new
@@ -29,4 +29,12 @@ export declare function getLexicalScanWarning(config: Config, chunkCount: number
  * a compatible index. Security advisories are reported separately and never change readiness.
  */
 export declare function manifestReady(manifest: IndexManifest | null, freshnessWarning: string | null): boolean;
+/**
+ * Share of the index held by the largest files. Above a fifth for one file, or half for three, a
+ * data export or log tends to fill the candidate pools of unrelated questions.
+ */
+export declare function indexConcentration(files: Iterable<{
+    relativePath: string;
+    chunkCount: number;
+}>): IndexConcentration;
 //# sourceMappingURL=index-diagnostics.d.ts.map

package/dist/index-diagnostics.d.ts.map

@@ -1 +1 @@
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package/dist/index-diagnostics.js

@@ -101,4 +101,39 @@ export function manifestReady(manifest, freshnessWarning) {
         health.oversizedFiles === 0 &&
         freshnessWarning === null);
 }
+const CONCENTRATION_TOP_FILES = 5;
+const LARGEST_FILE_SHARE_WARNING = 0.2;
+const TOP_THREE_SHARE_WARNING = 0.5;
+/**
+ * Share of the index held by the largest files. Above a fifth for one file, or half for three, a
+ * data export or log tends to fill the candidate pools of unrelated questions.
+ */
+export function indexConcentration(files) {
+    const sorted = [...files]
+        .filter((file) => file.chunkCount > 0)
+        .sort((left, right) => right.chunkCount - left.chunkCount);
+    const totalChunks = sorted.reduce((sum, file) => sum + file.chunkCount, 0);
+    const share = (chunks) => totalChunks === 0 ? 0 : Math.round((chunks / totalChunks) * 1_000) / 1_000;
+    const topFiles = sorted.slice(0, CONCENTRATION_TOP_FILES).map((file) => ({
+        relativePath: file.relativePath,
+        chunks: file.chunkCount,
+        share: share(file.chunkCount),
+    }));
+    const top3Share = share(sorted.slice(0, 3).reduce((sum, file) => sum + file.chunkCount, 0));
+    const largest = topFiles[0];
+    const concentrated = sorted.length > 3 &&
+        largest !== undefined &&
+        (largest.share > LARGEST_FILE_SHARE_WARNING || top3Share > TOP_THREE_SHARE_WARNING);
+    return {
+        totalChunks,
+        topFiles,
+        top3Share,
+        warning: concentrated
+            ? `${Math.min(3, sorted.length)} file(s) hold ${Math.round(top3Share * 100)}% of the index (${topFiles
+                .slice(0, 3)
+                .map((file) => `${file.relativePath} ${Math.round(file.share * 100)}%`)
+                .join(", ")}). Exclude data exports that agents do not need, cap them with maxChunksPerDataFile, or lower their rank with sourceWeights.`
+            : null,
+    };
+}
 //# sourceMappingURL=index-diagnostics.js.map

package/dist/index-diagnostics.js.map

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package/dist/index-policy.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index-policy.d.ts","sourceRoot":"","sources":["../src/index-policy.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,MAAM,YAAY,CAAA;AAIvD;;;GAGG;AACH,eAAO,MAAM,sBAAsB,IAAI,CAAA;AAGvC,wBAAgB,sBAAsB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CA6B7D;AAED,sGAAsG;AACtG,wBAAgB,0BAA0B,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAMjE;AAED,wBAAgB,oBAAoB,CAClC,QAAQ,EAAE,IAAI,CAAC,aAAa,EAAE,sBAAsB,CAAC,GACpD,OAAO,CAET"}

package/dist/index-policy.js

@@ -22,6 +22,10 @@ export function indexPolicyFingerprint(config) {
             adapterVersion: CHUNKING_ADAPTER_VERSION,
             size: config.chunkSize,
             overlap: config.chunkOverlap,
+            // Added only when set, so indexes built without a data-file cap keep their fingerprint.
+            ...(config.maxChunksPerDataFile === null
+                ? {}
+                : { maxChunksPerDataFile: config.maxChunksPerDataFile }),
         },
         extraction: {
             parserVersion: 3,

package/dist/index-policy.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index-policy.js","sourceRoot":"","sources":["../src/index-policy.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACxC,OAAO,EAAE,qBAAqB,EAAE,MAAM,gBAAgB,CAAA;AAGtD,MAAM,4BAA4B,GAAG,CAAC,CAAA;AACtC,MAAM,wBAAwB,GAAG,CAAC,CAAA;AAClC;;;GAGG;AACH,MAAM,CAAC,MAAM,sBAAsB,GAAG,CAAC,CAAA;AACvC,MAAM,6BAA6B,GAAG,CAAC,CAAA;AAEvC,MAAM,UAAU,sBAAsB,CAAC,MAAc;IACnD,MAAM,MAAM,GAAG;QACb,OAAO,EAAE,4BAA4B;QACrC,SAAS,EAAE;YACT,cAAc,EAAE,CAAC;YACjB,QAAQ,EAAE,MAAM,CAAC,iBAAiB;YAClC,KAAK,EAAE,MAAM,CAAC,cAAc;YAC5B,QAAQ,EAAE,MAAM,CAAC,sBAAsB;YACvC,MAAM,EAAE,MAAM,CAAC,oBAAoB;SACpC;QACD,QAAQ,EAAE;YACR,cAAc,EAAE,wBAAwB;YACxC,IAAI,EAAE,MAAM,CAAC,SAAS;YACtB,OAAO,EAAE,MAAM,CAAC,YAAY;YAC5B,wFAAwF;YACxF,GAAG,CAAC,MAAM,CAAC,oBAAoB,KAAK,IAAI;gBACtC,CAAC,CAAC,EAAE;gBACJ,CAAC,CAAC,EAAE,oBAAoB,EAAE,MAAM,CAAC,oBAAoB,EAAE,CAAC;SAC3D;QACD,UAAU,EAAE;YACV,aAAa,EAAE,CAAC;YAChB,aAAa,EAAE,MAAM,CAAC,aAAa;YACnC,kBAAkB,EAAE,MAAM,CAAC,aAAa,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,qBAAqB,CAAC,CAAC,CAAC,IAAI;YAClF,eAAe,EAAE,MAAM,CAAC,eAAe;YACvC,iBAAiB,EAAE,MAAM,CAAC,iBAAiB;SAC5C;KACF,CAAA;IAED,OAAO,UAAU,CAAC,QAAQ,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;AAC1E,CAAC;AAED,sGAAsG;AACtG,MAAM,UAAU,0BAA0B,CAAC,MAAc;IACvD,OAAO,UAAU,CAAC,QAAQ,CAAC;SACxB,MAAM,CACL,IAAI,CAAC,SAAS,CAAC,EAAE,KAAK,EAAE,sBAAsB,CAAC,MAAM,CAAC,EAAE,OAAO,EAAE,sBAAsB,EAAE,CAAC,CAC3F;SACA,MAAM,CAAC,KAAK,CAAC,CAAA;AAClB,CAAC;AAED,MAAM,UAAU,oBAAoB,CAClC,QAAqD;IAErD,OAAO,CAAC,QAAQ,CAAC,oBAAoB,IAAI,6BAA6B,CAAC,KAAK,sBAAsB,CAAA;AACpG,CAAC"}

package/dist/index-write-lock.d.ts.map

@@ -1 +1 @@
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package/dist/index-write-lock.js

@@ -1,8 +1,9 @@
 import { randomUUID } from "node:crypto";
-import { mkdir, open, readFile, rename, rm, stat } from "node:fs/promises";
+import { mkdir, open, readFile, rm, stat } from "node:fs/promises";
 import { hostname } from "node:os";
 import path from "node:path";
 import { RagmirError } from "./errors.js";
+import { removeTree, renameWithRetry } from "./fs-retry.js";
 import { isRecord } from "./guards.js";
 import { throwIfAborted } from "./operation.js";
 import { ensurePrivateDirectory, hardenPrivateFile } from "./permissions.js";
@@ -99,7 +100,7 @@ async function tryCreateLease(lockPath, heartbeatIntervalMs) {
         return createLease(lockPath, owner, heartbeatIntervalMs);
     }
     catch (error) {
-        await rm(lockPath, { recursive: true, force: true });
+        await removeTree(lockPath);
         throw error;
     }
 }
@@ -133,7 +134,7 @@ function createLease(lockPath, owner, heartbeatIntervalMs) {
             await heartbeat.catch(() => undefined);
             const current = await readOwner(lockPath);
             if (current?.ownerToken === owner.ownerToken) {
-                await rm(lockPath, { recursive: true, force: true });
+                await removeTree(lockPath);
             }
         }
         finally {
@@ -163,7 +164,7 @@ async function recoverAbandonedWriterLock(storageDir, observedOwner) {
             observedOwner.ownerToken !== currentOwner.ownerToken) {
             return false;
         }
-        await rm(lockPath, { recursive: true, force: true });
+        await removeTree(lockPath);
         return true;
     }
     finally {
@@ -201,7 +202,7 @@ async function tryCreateRecoveryLock(recoveryPath) {
         return owner;
     }
     catch (error) {
-        await rm(recoveryPath, { recursive: true, force: true });
+        await removeTree(recoveryPath);
         throw error;
     }
 }
@@ -238,7 +239,7 @@ function ownerProcessIsAlive(owner) {
 async function removeOwnedDirectory(directory, ownerToken) {
     const current = await readOwner(directory);
     if (ownerToken === undefined || current?.ownerToken === ownerToken) {
-        await rm(directory, { recursive: true, force: true });
+        await removeTree(directory);
     }
 }
 async function writeOwner(directory, owner) {
@@ -252,7 +253,7 @@ async function writeOwner(directory, owner) {
         await handle.close();
         handle = undefined;
         await hardenPrivateFile(temporaryPath);
-        await rename(temporaryPath, ownerPath);
+        await renameWithRetry(temporaryPath, ownerPath);
     }
     finally {
         await handle?.close();

package/dist/index-write-lock.js.map

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package/dist/ingest.d.ts

@@ -2,6 +2,12 @@ import type { Connection } from "@lancedb/lancedb";
 import type { AuditOptions, AuditReport, Config, IndexManifestFile, IngestOptions, IngestResult } from "./types.js";
 export declare function ingest(options?: IngestOptions): Promise<IngestResult>;
 export declare function ingestWithConfig(config: Config, options?: IngestOptions, connection?: Connection): Promise<IngestResult>;
+/**
+ * Keep a bounded, representative sample of a large structured data file: its first half-budget of
+ * chunks (headers, schema, first records) and evenly spaced records from the rest. One export or log
+ * can otherwise hold most of the index and crowd every other document out of the candidate pools.
+ */
+export declare function capDataFileChunks<Chunk>(chunks: Chunk[], extension: string, maxChunks: number | null): Chunk[];
 export interface IngestionMetadataValidationOptions {
     expectedChunkCount: number;
     actualChunkCount: number;

package/dist/ingest.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ingest.d.ts","sourceRoot":"","sources":["../src/ingest.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAA;AAiElD,OAAO,KAAK,EACV,YAAY,EACZ,WAAW,EACX,MAAM,EAKN,iBAAiB,EACjB,aAAa,EACb,YAAY,EAOb,MAAM,YAAY,CAAA;AAsBnB,wBAAsB,MAAM,CAAC,OAAO,GAAE,aAAkB,GAAG,OAAO,CAAC,YAAY,CAAC,CAG/E;AAED,wBAAsB,gBAAgB,CACpC,MAAM,EAAE,MAAM,EACd,OAAO,GAAE,aAAkB,EAC3B,UAAU,CAAC,EAAE,UAAU,GACtB,OAAO,CAAC,YAAY,CAAC,CA+CvB;AA4vBD,MAAM,WAAW,kCAAkC;IACjD,kBAAkB,EAAE,MAAM,CAAA;IAC1B,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,QAAQ,CAAC,iBAAiB,CAAC,CAAA;IAC1C,MAAM,EAAE,aAAa,CAAC,OAAO,CAAC,CAAA;IAC9B,QAAQ,EAAE,aAAa,CAAC,OAAO,CAAC,CAAA;CACjC;AAED,wBAAsB,yBAAyB,CAC7C,OAAO,EAAE,kCAAkC,GAC1C,OAAO,CAAC,IAAI,CAAC,CAyDf;AAqGD,wBAAsB,KAAK,CAAC,GAAG,SAAgB,EAAE,OAAO,GAAE,YAAiB,GAAG,OAAO,CAAC,WAAW,CAAC,CAKjG;AAED,wBAAsB,eAAe,CACnC,MAAM,EAAE,MAAM,EACd,OAAO,GAAE,YAAiB,GACzB,OAAO,CAAC,WAAW,CAAC,CAgHtB"}
+{"version":3,"file":"ingest.d.ts","sourceRoot":"","sources":["../src/ingest.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,kBAAkB,CAAA;AAmElD,OAAO,KAAK,EACV,YAAY,EACZ,WAAW,EACX,MAAM,EAKN,iBAAiB,EACjB,aAAa,EACb,YAAY,EAOb,MAAM,YAAY,CAAA;AAsBnB,wBAAsB,MAAM,CAAC,OAAO,GAAE,aAAkB,GAAG,OAAO,CAAC,YAAY,CAAC,CAG/E;AAED,wBAAsB,gBAAgB,CACpC,MAAM,EAAE,MAAM,EACd,OAAO,GAAE,aAAkB,EAC3B,UAAU,CAAC,EAAE,UAAU,GACtB,OAAO,CAAC,YAAY,CAAC,CA+CvB;AAocD;;;;GAIG;AACH,wBAAgB,iBAAiB,CAAC,KAAK,EACrC,MAAM,EAAE,KAAK,EAAE,EACf,SAAS,EAAE,MAAM,EACjB,SAAS,EAAE,MAAM,GAAG,IAAI,GACvB,KAAK,EAAE,CAmBT;AAmTD,MAAM,WAAW,kCAAkC;IACjD,kBAAkB,EAAE,MAAM,CAAA;IAC1B,gBAAgB,EAAE,MAAM,CAAA;IACxB,aAAa,EAAE,QAAQ,CAAC,iBAAiB,CAAC,CAAA;IAC1C,MAAM,EAAE,aAAa,CAAC,OAAO,CAAC,CAAA;IAC9B,QAAQ,EAAE,aAAa,CAAC,OAAO,CAAC,CAAA;CACjC;AAED,wBAAsB,yBAAyB,CAC7C,OAAO,EAAE,kCAAkC,GAC1C,OAAO,CAAC,IAAI,CAAC,CAyDf;AAqGD,wBAAsB,KAAK,CAAC,GAAG,SAAgB,EAAE,OAAO,GAAE,YAAiB,GAAG,OAAO,CAAC,WAAW,CAAC,CAKjG;AAED,wBAAsB,eAAe,CACnC,MAAM,EAAE,MAAM,EACd,OAAO,GAAE,YAAiB,GACzB,OAAO,CAAC,WAAW,CAAC,CAsHtB"}

package/dist/ingest.js

@@ -3,9 +3,9 @@ import { chunkDocument, chunkLexicalText, chunkSearchText } from "./chunking.js"
 import { loadConfig } from "./config.js";
 import { MAX_INGEST_CHUNK_WINDOW, MAX_INGEST_CHUNKS_PER_FILE, MAX_INGEST_FILE_BATCH_SIZE, MAX_INGEST_SOURCE_WINDOW_BYTES, MAX_INGEST_VECTOR_BYTES_PER_FILE, VECTOR_DISTANCE_METRIC, } from "./defaults.js";
 import { embeddingModelState, embedTexts } from "./embeddings.js";
-import { countSkippedByReason, inventorySourceFiles, summarizeUnsupportedExtensions, } from "./files.js";
+import { countSkippedByReason, inventorySourceFiles, sourceRuleDiagnostics, summarizeUnsupportedExtensions, } from "./files.js";
 import { collectGenerationGarbageUnlocked } from "./generation-retention.js";
-import { INDEX_SCHEMA_VERSION } from "./index-diagnostics.js";
+import { INDEX_SCHEMA_VERSION, indexConcentration } from "./index-diagnostics.js";
 import { indexPolicyFingerprint, ingestionPolicyFingerprint, LEXICAL_POLICY_VERSION, lexicalPolicyCurrent, } from "./index-policy.js";
 import { withIndexWriteLock } from "./index-write-lock.js";
 import { activeIngestionMetrics, createIngestionMetricsCollector, runWithIngestionMetrics, } from "./ingestion-metrics.js";
@@ -14,6 +14,7 @@ import { operationSignal, throwIfAborted } from "./operation.js";
 import { parseFile } from "./parsing.js";
 import { summarizeIndexedCorpus } from "./quality-report.js";
 import { securityAuditWithConfig } from "./security.js";
+import { compareCodePoints } from "./source-paths.js";
 import { maintainStorageTable } from "./storage-maintenance.js";
 import { activeIndexTableName, closeRowsTable, dropRowsTable, openRowsTable, openRowsTableByName, readEmptyTextFiles, readIndexManifest, updateRowsInTable, writeEmptyTextFiles, writeIndexManifest, } from "./store.js";
 import { VERSION } from "./version.js";
@@ -423,7 +424,7 @@ async function parseSourceFile(file, config, signal) {
             });
         return {
             file,
-            chunks,
+            chunks: capDataFileChunks(chunks, file.extension, config.maxChunksPerDataFile),
             ocr: parsed.ocr ?? null,
             error: null,
         };
@@ -439,6 +440,40 @@ async function parseSourceFile(file, config, signal) {
         };
     }
 }
+const STRUCTURED_DATA_EXTENSIONS = new Set([
+    ".csv",
+    ".json",
+    ".jsonl",
+    ".log",
+    ".ndjson",
+    ".ods",
+    ".tsv",
+    ".xls",
+    ".xlsx",
+]);
+/**
+ * Keep a bounded, representative sample of a large structured data file: its first half-budget of
+ * chunks (headers, schema, first records) and evenly spaced records from the rest. One export or log
+ * can otherwise hold most of the index and crowd every other document out of the candidate pools.
+ */
+export function capDataFileChunks(chunks, extension, maxChunks) {
+    if (maxChunks === null ||
+        chunks.length <= maxChunks ||
+        !STRUCTURED_DATA_EXTENSIONS.has(extension.toLowerCase())) {
+        return chunks;
+    }
+    const headCount = Math.ceil(maxChunks / 2);
+    const sampled = chunks.slice(0, headCount);
+    const sampleCount = maxChunks - headCount;
+    const remaining = chunks.length - headCount;
+    for (let index = 0; index < sampleCount; index += 1) {
+        const chunk = chunks[headCount + Math.floor(((index + 0.5) * remaining) / sampleCount)];
+        if (chunk !== undefined) {
+            sampled.push(chunk);
+        }
+    }
+    return sampled;
+}
 async function vectorRowsForChunks(chunks, config, signal) {
     const metrics = activeIngestionMetrics();
     const rows = [];
@@ -572,6 +607,7 @@ function indexHealthSnapshot(input) {
         sourceDiagnostics: sourceDiagnostics(input.files, input.inventory.skippedFiles),
         securityCheckedAt: input.checkedAt,
         securityWarnings: [...input.securityWarnings].sort().slice(0, MAX_HEALTH_PREVIEW_ITEMS),
+        concentration: indexConcentration(indexedFilesFromState(input.state)),
     };
 }
 function indexMaintenanceSnapshot(report, checkedAt) {
@@ -618,24 +654,7 @@ function* indexedFilesFromState(state) {
     }
 }
 function sortIngestionFilesForStorage(state) {
-    state.files.sort((left, right) => compareUnicodeScalarValues(left.relativePath, right.relativePath));
-}
-function compareUnicodeScalarValues(left, right) {
-    let leftIndex = 0;
-    let rightIndex = 0;
-    while (leftIndex < left.length && rightIndex < right.length) {
-        const leftCodePoint = left.codePointAt(leftIndex);
-        const rightCodePoint = right.codePointAt(rightIndex);
-        if (leftCodePoint === undefined || rightCodePoint === undefined) {
-            break;
-        }
-        if (leftCodePoint !== rightCodePoint) {
-            return leftCodePoint - rightCodePoint;
-        }
-        leftIndex += leftCodePoint > 0xffff ? 2 : 1;
-        rightIndex += rightCodePoint > 0xffff ? 2 : 1;
-    }
-    return left.length - right.length;
+    state.files.sort((left, right) => compareCodePoints(left.relativePath, right.relativePath));
 }
 function emptyTextRecords(state) {
     return state.files
@@ -831,6 +850,7 @@ export async function auditWithConfig(config, options = {}) {
     const table = await openRowsTable(config);
     throwIfAborted(signal);
     const emptyTextFiles = await currentEmptyTextFiles(config, files, signal);
+    const sourceRules = await sourceRuleDiagnostics(config, files, signal ? { signal } : {});
     throwIfAborted(signal);
     if (!table) {
         return applyAuditPreviewLimit({
@@ -850,6 +870,7 @@ export async function auditWithConfig(config, options = {}) {
             staleInIndex: [],
             totalChunks: 0,
             chunkStats: summarizeChunkStats([]),
+            sourceRules,
         }, options.previewLimit);
     }
     try {
@@ -902,6 +923,8 @@ export async function auditWithConfig(config, options = {}) {
                 .sort(),
             totalChunks: chunkStats.count,
             chunkStats: finishAuditChunkStats(chunkStats),
+            sourceRules,
+            concentration: indexConcentration([...counts.entries()].map(([relativePath, chunkCount]) => ({ relativePath, chunkCount }))),
         }, options.previewLimit);
     }
     finally {