@jcode.labs/ragmir 6.1.3 → 6.1.5

package/dist/setup.js

@@ -1,5 +1,7 @@
+import { chmod, stat } from "node:fs/promises";
 import path from "node:path";
-import { loadConfig } from "./config.js";
+import { findProjectConfig, loadConfig } from "./config.js";
+import { RAGMIR_DIR } from "./defaults.js";
 import { doctor } from "./doctor.js";
 import { pullEmbeddingModel } from "./embeddings.js";
 import { ingest } from "./ingest.js";
@@ -7,7 +9,41 @@ import { initProject } from "./init.js";
 import { rgrCommand } from "./package-manager.js";
 import { enableSemanticEmbeddings } from "./semantic-config.js";
 import { RAGMIR_SETUP_PROMPT } from "./setup-prompt.js";
-import { installAgentSkills, } from "./skill.js";
+import { inspectAgentIntegration, installAgentSkills, } from "./skill.js";
+/**
+ * Repair a project without widening it: keep the agents it already exposes, and restore owner-only
+ * permissions on the Ragmir-owned paths under `.ragmir/` that the security audit reports as shared.
+ */
+export async function repairProject(options = {}) {
+    const cwd = path.resolve(options.cwd ?? process.cwd());
+    await hardenRagmirOwnedPaths(cwd);
+    const installedAgents = inspectAgentIntegration(cwd).projectAgents;
+    return setupProject({ cwd, ...(installedAgents.length > 0 ? { agents: installedAgents } : {}) });
+}
+async function hardenRagmirOwnedPaths(cwd) {
+    if (process.platform === "win32") {
+        return;
+    }
+    const config = await loadConfig(cwd).catch(() => null);
+    if (!config) {
+        return;
+    }
+    const ragmirDir = path.join(config.projectRoot, RAGMIR_DIR);
+    const privatePaths = [
+        ragmirDir,
+        findProjectConfig(config.projectRoot).configPath,
+        config.rawDir,
+        config.storageDir,
+        config.sourcesFile,
+        config.embeddingModelPath,
+    ].filter((filePath) => filePath === ragmirDir || filePath.startsWith(`${ragmirDir}${path.sep}`));
+    for (const filePath of privatePaths) {
+        const metadata = await stat(filePath).catch(() => null);
+        if (metadata && (metadata.mode & 0o077) !== 0) {
+            await chmod(filePath, metadata.isDirectory() ? 0o700 : 0o600);
+        }
+    }
+}
 export async function setupProject(options = {}) {
     const cwd = path.resolve(options.cwd ?? process.cwd());
     const created = await initProject(cwd);

package/dist/setup.js.map

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package/dist/upgrade.js

@@ -92,7 +92,7 @@ function upgradeReason(report, status) {
         return (report.indexFreshness.warning ??
             (report.readiness.lexicalIndexCurrent
                 ? "The active index policy differs from this Ragmir runtime and requires a staged rebuild."
-                : "The active index predates path and identifier keyword terms. Search keeps working while upgrade stages the rebuild."));
+                : "The active index predates the current keyword terms. Search keeps working while upgrade stages the rebuild."));
     }
     return report.nextSteps[0] ?? "The active index needs repair before retrieval is ready.";
 }

package/dist/upgrade.js.map

@@ -1 +1 @@
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package/dist/version.d.ts

@@ -1,2 +1,2 @@
-export declare const VERSION = "6.1.3";
+export declare const VERSION = "6.1.5";
 //# sourceMappingURL=version.d.ts.map

package/dist/version.js

@@ -1,2 +1,2 @@
-export const VERSION = "6.1.3";
+export const VERSION = "6.1.5";
 //# sourceMappingURL=version.js.map

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jcode.labs/ragmir",
-  "version": "6.1.3",
+  "version": "6.1.5",
   "description": "Open-source retrieval for agentic RAG: local document search, exact citations, OCR, CLI, MCP, and TypeScript.",
   "type": "module",
   "license": "AGPL-3.0-only",
@@ -63,7 +63,7 @@
   },
   "dependencies": {
     "@lancedb/lancedb": "^0.30.0",
-    "@modelcontextprotocol/sdk": "^1.32.1",
+    "@modelcontextprotocol/sdk": "^1.32.2",
     "commander": "^15.0.0",
     "fast-glob": "^3.3.3",
     "fflate": "^0.8.3",

package/skills/ragmir/SKILL.md

@@ -40,7 +40,7 @@ Old redaction/privacy settings require this explicit migration. Source text is n
 | Incremental indexing | `rgr ingest` |
 | Repair setup and stale data | `rgr doctor --fix` |
 | Retrieve passages | `rgr search "query" --compact`, `ragmir_search` |
-| Expand a citation | `rgr expand "citation" --json`, `ragmir_expand` |
+| Expand a citation | `ragmir_expand`, or `rgr search "query" --json` for full passages |
 | Inspect ranking | `rgr search "query" --explain` |
 | Measure retrieval quality | `rgr evaluate --golden <file>` |
 | Inspect local file and provider safeguards | `rgr security-audit` |