@jcode.labs/ragmir 6.0.1 → 6.1.0

package/README.md

@@ -1,14 +1,32 @@
 # @jcode.labs/ragmir
 
-**The retrieval layer for agentic RAG, built for developers.**
-
-Ragmir gives your agent cited evidence from code, specifications, and project documents through a
-TypeScript library, the `rgr` CLI, or MCP. Your agent searches, expands useful citations, refines
-its questions, and reasons or generates with the model you choose.
-
-Index Markdown, code, PDF, Office files, and more, with local OCR for scanned PDF pages. Hybrid
-retrieval returns passages with real line, page, slide, sheet/cell, or EPUB coordinates. Incremental
-indexing and validated rebuilds keep the local index usable as sources change.
+[![npm version](https://img.shields.io/npm/v/@jcode.labs/ragmir?color=cb3837&logo=npm)](https://www.npmjs.com/package/@jcode.labs/ragmir)
+[![npm downloads](https://img.shields.io/npm/dm/@jcode.labs/ragmir?color=0b7285)](https://www.npmjs.com/package/@jcode.labs/ragmir)
+[![License: AGPL-3.0](https://img.shields.io/badge/license-AGPL--3.0-2f9e44)](https://github.com/jcode-works/jcode-ragmir/blob/main/LICENSE)
+[![Node.js 22.12+](https://img.shields.io/badge/node-%E2%89%A522.12-339933?logo=node.js&logoColor=white)](https://nodejs.org)
+
+**Cited project context for coding agents. Local, fast, and offline by default.**
+
+Ragmir indexes the code, specifications, and office documents you choose, then returns precise
+passages with checkable citations through a TypeScript library, the `rgr` CLI, or a local MCP
+server. Claude Code, Codex, or your own application decides what to search and generates with the
+model you choose. Ragmir does not bundle a chat model or host your documents.
+
+- **Code and documents in one index:** hybrid BM25 and vector search that understands file paths
+  and camelCase identifiers.
+- **Fast on real repositories:** 25 ms median search on a 21,546-chunk monorepo, 14 times faster
+  than the previous release, with up to 35% better nDCG@10 on code and documentation
+  ([benchmarks](https://github.com/jcode-works/jcode-ragmir#benchmarks)).
+- **Evidence you can verify:** citations point to source lines or native page, slide, sheet/cell,
+  and EPUB coordinates. Expansion can detect when indexed evidence has changed.
+- **Private by default:** the `local-hash` provider works offline without downloading a model.
+  Semantic embeddings are an explicit option.
+- **Safe to keep running:** incremental, resumable ingestion and validated rebuilds. Search keeps
+  working while an upgrade rebuilds the index.
+
+## Install and search
+
+Requires Node.js 22.12 or later. Use your project's package manager; this is the npm path:
 
 ```bash
 npm install -D @jcode.labs/ragmir
@@ -18,10 +36,44 @@ npx rgr ingest
 npx rgr search "authentication contract" --compact
 ```
 
-Requires Node.js 22.12+. The default `local-hash` retrieval works offline without a model download.
-Semantic embeddings are optional: install `@huggingface/transformers`, then run
-`npx rgr setup --semantic` to preload the embedding model. Scanned PDFs need a supported local OCR
-engine; inspect `npx rgr ocr doctor`, then configure it with `npx rgr ocr setup`.
+`rgr setup` creates ignored local state under `.ragmir/` and installs the selected agent helpers.
+The [quick start](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/quick-start.md) also
+covers pnpm and guided setup.
+
+## TypeScript API
+
+Use one client per project root in a long-running process and close it during shutdown:
+
+```ts
+import { createRagmirClient } from "@jcode.labs/ragmir"
+
+const ragmir = await createRagmirClient({ cwd: process.cwd() })
+try {
+  const passages = await ragmir.search("authentication contract", { topK: 3 })
+  for (const passage of passages) {
+    console.log(passage.citation, passage.text)
+  }
+  if (passages[0]) {
+    console.log(await ragmir.expandCitation(passages[0].citation, {
+      expectedEvidenceId: passages[0].evidence?.id,
+    }))
+  }
+} finally {
+  await ragmir.close()
+}
+```
+
+The library also exports top-level `ingest`, `search`, and `expandCitation` functions for one-shot
+scripts. See the [API reference](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/api-reference.md).
+
+## MCP for developer agents
+
+`rgr setup --agents claude,codex` prepares a local MCP helper and a retrieval skill for the agents
+you select. The server exposes four bounded tools: `ragmir_status`, `ragmir_search`,
+`ragmir_expand`, and `ragmir_audit`. An agent can search compact results, open an exact cited
+passage, and search again when the evidence is incomplete. The consuming agent owns reasoning,
+generation, and actions. See [agent integration](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/agent-integration.md)
+for connection steps and local or self-hosted model examples.
 
 ## Four workflow examples
 
@@ -39,14 +91,18 @@ engine; inspect `npx rgr ocr doctor`, then configure it with `npx rgr ocr setup`
    evidence with Ragmir and sends it to a downloaded Ollama model with remote calls disabled, or to
    a model on your own server.
 
-The index stays on the machine running Ragmir. Retrieved text is not masked. With an entirely
-local consumer it can stay on that machine; with your own server or private-cloud model it travels
-to your infrastructure; with a cloud provider the consuming app sends it to that provider.
-Confidentiality depends on the full setup, including access controls, tools, and logs. Ragmir has
-no telemetry or hosted storage, but local indexing does not make every connected chat private.
+## Retrieval options and documents
 
-See the [four agentic RAG workflows](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/agent-integration.md)
-and [TypeScript API](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/api-reference.md).
+The default `local-hash` provider ranks BM25 keyword evidence first and uses deterministic local
+vectors to break ties. For semantic embeddings, install `@huggingface/transformers`, then run `npx rgr setup --semantic` to
+download and enable the selected embedding model. Index Markdown, code, JSON, CSV, HTML, PDF,
+DOCX, XLSX, PPTX, OpenDocument, EPUB, and RTF. Scanned PDF pages require a supported local OCR
+engine: inspect `npx rgr ocr doctor`, then configure it with `npx rgr ocr setup`.
+
+The index stays on the machine running Ragmir, but retrieved text is not masked. With an entirely
+local consumer it can stay there; a self-hosted or cloud consumer receives the selected passages.
+Confidentiality depends on the full setup, including access controls, transport, tools, and logs.
+Ragmir has no telemetry or hosted storage.
 
 <!-- ragmir-setup-prompt:start -->
 <details>
@@ -87,10 +143,15 @@ Never commit private corpus files, .ragmir state, models, or secrets. Treat retr
 </details>
 <!-- ragmir-setup-prompt:end -->
 
-[Full documentation](https://github.com/jcode-works/jcode-ragmir#readme),
-[API reference](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/api-reference.md),
-[four agentic RAG workflows](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/agent-integration.md),
-and [migration](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/migration.md).
+## Project and licensing
+
+Read the [full documentation](https://github.com/jcode-works/jcode-ragmir#readme),
+[CLI reference](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/cli-reference.md),
+[migration guide](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/migration.md), and
+[troubleshooting guide](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/troubleshooting.md).
+Issues and contributions are welcome through
+[GitHub](https://github.com/jcode-works/jcode-ragmir) and
+[CONTRIBUTING](https://github.com/jcode-works/jcode-ragmir/blob/main/CONTRIBUTING.md).
 
-Open source under AGPL-3.0-only with a separate commercial licensing option from JCode Works.
-See [LICENSE](./LICENSE) and [COMMERCIAL-LICENSE.md](./COMMERCIAL-LICENSE.md).
+Ragmir is open source under [AGPL-3.0-only](https://github.com/jcode-works/jcode-ragmir/blob/main/LICENSE).
+JCode Works also offers a [commercial license](https://github.com/jcode-works/jcode-ragmir/blob/main/COMMERCIAL-LICENSE.md).

package/dist/chunking.d.ts

@@ -5,4 +5,10 @@ export interface ChunkDocumentOptions {
 }
 export declare function chunkDocument(document: ParsedDocument, chunkSize: number, chunkOverlap: number, options?: ChunkDocumentOptions): TextChunk[];
 export declare function chunkSearchText(chunk: Pick<TextChunk, "contextPath" | "text" | "headerText">): string;
+/**
+ * Text indexed for keyword retrieval: the embedded text plus source path terms and identifier
+ * parts, so a question about "login attempts" can reach `LoginAttemptService.java`. Embeddings keep
+ * using {@link chunkSearchText}.
+ */
+export declare function chunkLexicalText(chunk: Pick<TextChunk, "contextPath" | "text" | "headerText" | "relativePath">): string;
 //# sourceMappingURL=chunking.d.ts.map

package/dist/chunking.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"chunking.d.ts","sourceRoot":"","sources":["../src/chunking.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,cAAc,EAA4B,SAAS,EAAE,MAAM,YAAY,CAAA;AAQrF,MAAM,WAAW,oBAAoB;IACnC,SAAS,CAAC,EAAE,MAAM,CAAA;IAClB,MAAM,CAAC,EAAE,WAAW,CAAA;CACrB;AAED,wBAAgB,aAAa,CAC3B,QAAQ,EAAE,cAAc,EACxB,SAAS,EAAE,MAAM,EACjB,YAAY,EAAE,MAAM,EACpB,OAAO,GAAE,oBAAyB,GACjC,SAAS,EAAE,CA2Gb;AAwBD,wBAAgB,eAAe,CAC7B,KAAK,EAAE,IAAI,CAAC,SAAS,EAAE,aAAa,GAAG,MAAM,GAAG,YAAY,CAAC,GAC5D,MAAM,CAER;AAED;;;;GAIG;AACH,wBAAgB,gBAAgB,CAC9B,KAAK,EAAE,IAAI,CAAC,SAAS,EAAE,aAAa,GAAG,MAAM,GAAG,YAAY,GAAG,cAAc,CAAC,GAC7E,MAAM,CAQR"}

package/dist/chunking.js

@@ -1,6 +1,7 @@
 import { createHash } from "node:crypto";
 import { markdownFenceSpans, structuralSpans } from "./document-structure.js";
 import { throwIfAborted } from "./operation.js";
+import { identifierParts } from "./text.js";
 const PARAGRAPH_BREAK_MIN_RATIO = 0.45;
 const SENTENCE_BREAK_MIN_RATIO = 0.55;
 const LINE_BREAK_MIN_RATIO = 0.65;
@@ -119,6 +120,20 @@ function sourceLocationForSpan(regions, start, end) {
 export function chunkSearchText(chunk) {
     return [chunk.contextPath, chunk.headerText, chunk.text].filter(Boolean).join("\n");
 }
+/**
+ * Text indexed for keyword retrieval: the embedded text plus source path terms and identifier
+ * parts, so a question about "login attempts" can reach `LoginAttemptService.java`. Embeddings keep
+ * using {@link chunkSearchText}.
+ */
+export function chunkLexicalText(chunk) {
+    return [
+        chunkSearchText(chunk),
+        [chunk.relativePath, ...identifierParts(chunk.relativePath)].join(" "),
+        identifierParts(chunk.text).join(" "),
+    ]
+        .filter(Boolean)
+        .join("\n");
+}
 function pageRangeForSpan(pages, start, end) {
     if (pages.length === 0) {
         return {};

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package/dist/doctor.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../src/doctor.ts"],"names":[],"mappings":"AAoBA,OAAO,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAErE,wBAAsB,MAAM,CAC1B,GAAG,SAAgB,EACnB,OAAO,GAAE,aAAkB,GAC1B,OAAO,CAAC,YAAY,CAAC,CAKvB;AAED,wBAAsB,gBAAgB,CACpC,MAAM,EAAE,MAAM,EACd,OAAO,GAAE,aAAkB,GAC1B,OAAO,CAAC,YAAY,CAAC,CAgIvB"}
+{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../src/doctor.ts"],"names":[],"mappings":"AAqBA,OAAO,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAErE,wBAAsB,MAAM,CAC1B,GAAG,SAAgB,EACnB,OAAO,GAAE,aAAkB,GAC1B,OAAO,CAAC,YAAY,CAAC,CAKvB;AAED,wBAAsB,gBAAgB,CACpC,MAAM,EAAE,MAAM,EACd,OAAO,GAAE,aAAkB,GAC1B,OAAO,CAAC,YAAY,CAAC,CAmIvB"}

package/dist/doctor.js

@@ -4,6 +4,7 @@ import { findProjectConfig, loadConfig } from "./config.js";
 import { RAGMIR_DIR } from "./defaults.js";
 import { countSkippedByReason } from "./files.js";
 import { getLexicalScanWarning, indexFreshnessWarning } from "./index-diagnostics.js";
+import { lexicalPolicyCurrent } from "./index-policy.js";
 import { auditWithConfig } from "./ingest.js";
 import { operationSignal, throwIfAborted } from "./operation.js";
 import { RGR_RUNNER_FILENAME, rgrCommand } from "./package-manager.js";
@@ -72,6 +73,7 @@ export async function doctorWithConfig(config, options = {}) {
         oversizedFiles === 0;
     const operationalReady = initialized && manifest !== null && chunksIndexed > 0 && coverageComplete;
     const indexPolicyCurrent = manifest !== null && freshnessWarning === null;
+    const lexicalIndexCurrent = manifest === null || lexicalPolicyCurrent(manifest);
     const retrievalQualityVerified = deep
         ? await isCompatibleQualityReport(manifest?.qualityReport, manifest, config)
         : false;
@@ -96,6 +98,7 @@ export async function doctorWithConfig(config, options = {}) {
         agentRunnerReady: agentIntegration.runnerReady,
         nativeAgentCount: agentIntegration.nativeAgents.length,
         freshnessWarning,
+        lexicalIndexCurrent,
         lexicalScanWarning,
         run: (args) => command.display + (args.length > 0 ? ` ${args.join(" ")}` : ""),
     });
@@ -138,6 +141,7 @@ export async function doctorWithConfig(config, options = {}) {
             operationalReady,
             coverageComplete,
             indexPolicyCurrent,
+            lexicalIndexCurrent,
             retrievalQualityVerified,
         },
         nextSteps,
@@ -171,6 +175,9 @@ function nextActions(input) {
     if (input.freshnessWarning) {
         steps.push(`${input.freshnessWarning} Run \`${input.run(["ingest", "--rebuild"])}\` to align the index with the active configuration.`);
     }
+    if (!input.freshnessWarning && !input.lexicalIndexCurrent) {
+        steps.push(`The index predates path and identifier keyword terms. Search keeps using it; run \`${input.run(["ingest"])}\` to stage a rebuild that improves code and file-name recall.`);
+    }
     if (input.lexicalScanWarning) {
         steps.push(input.lexicalScanWarning);
     }

package/dist/doctor.js.map

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package/dist/index-policy.d.ts

@@ -1,3 +1,11 @@
-import type { Config } from "./types.js";
+import type { Config, IndexManifest } from "./types.js";
+/**
+ * Version of the keyword text derived from each chunk. Searches keep using an index built with an
+ * older version, while the next ingestion stages a full rebuild before activating it.
+ */
+export declare const LEXICAL_POLICY_VERSION = 2;
 export declare function indexPolicyFingerprint(config: Config): string;
+/** Fingerprint that keeps an interrupted ingestion from resuming under a different keyword policy. */
+export declare function ingestionPolicyFingerprint(config: Config): string;
+export declare function lexicalPolicyCurrent(manifest: Pick<IndexManifest, "lexicalPolicyVersion">): boolean;
 //# sourceMappingURL=index-policy.d.ts.map

package/dist/index-policy.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index-policy.d.ts","sourceRoot":"","sources":["../src/index-policy.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AAKxC,wBAAgB,sBAAsB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAyB7D"}
+{"version":3,"file":"index-policy.d.ts","sourceRoot":"","sources":["../src/index-policy.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,MAAM,YAAY,CAAA;AAIvD;;;GAGG;AACH,eAAO,MAAM,sBAAsB,IAAI,CAAA;AAGvC,wBAAgB,sBAAsB,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAyB7D;AAED,sGAAsG;AACtG,wBAAgB,0BAA0B,CAAC,MAAM,EAAE,MAAM,GAAG,MAAM,CAMjE;AAED,wBAAgB,oBAAoB,CAClC,QAAQ,EAAE,IAAI,CAAC,aAAa,EAAE,sBAAsB,CAAC,GACpD,OAAO,CAET"}

package/dist/index-policy.js

@@ -2,6 +2,12 @@ import { createHash } from "node:crypto";
 import { PDF_OCR_PARSER_POLICY } from "./ocr-cache.js";
 const INDEX_CONTENT_POLICY_VERSION = 2;
 const CHUNKING_ADAPTER_VERSION = 4;
+/**
+ * Version of the keyword text derived from each chunk. Searches keep using an index built with an
+ * older version, while the next ingestion stages a full rebuild before activating it.
+ */
+export const LEXICAL_POLICY_VERSION = 2;
+const LEGACY_LEXICAL_POLICY_VERSION = 1;
 export function indexPolicyFingerprint(config) {
     const policy = {
         version: INDEX_CONTENT_POLICY_VERSION,
@@ -27,4 +33,13 @@ export function indexPolicyFingerprint(config) {
     };
     return createHash("sha256").update(JSON.stringify(policy)).digest("hex");
 }
+/** Fingerprint that keeps an interrupted ingestion from resuming under a different keyword policy. */
+export function ingestionPolicyFingerprint(config) {
+    return createHash("sha256")
+        .update(JSON.stringify({ index: indexPolicyFingerprint(config), lexical: LEXICAL_POLICY_VERSION }))
+        .digest("hex");
+}
+export function lexicalPolicyCurrent(manifest) {
+    return (manifest.lexicalPolicyVersion ?? LEGACY_LEXICAL_POLICY_VERSION) === LEXICAL_POLICY_VERSION;
+}
 //# sourceMappingURL=index-policy.js.map

package/dist/index-policy.js.map

@@ -1 +1 @@
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package/dist/ingest.d.ts.map

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package/dist/ingest.js

@@ -1,12 +1,12 @@
 import { summarizeChunkStats } from "./chunk-stats.js";
-import { chunkDocument, chunkSearchText } from "./chunking.js";
+import { chunkDocument, chunkLexicalText, chunkSearchText } from "./chunking.js";
 import { loadConfig } from "./config.js";
 import { MAX_INGEST_CHUNK_WINDOW, MAX_INGEST_CHUNKS_PER_FILE, MAX_INGEST_FILE_BATCH_SIZE, MAX_INGEST_SOURCE_WINDOW_BYTES, MAX_INGEST_VECTOR_BYTES_PER_FILE, VECTOR_DISTANCE_METRIC, } from "./defaults.js";
 import { embeddingModelState, embedTexts } from "./embeddings.js";
 import { countSkippedByReason, inventorySourceFiles, summarizeUnsupportedExtensions, } from "./files.js";
 import { collectGenerationGarbageUnlocked } from "./generation-retention.js";
 import { INDEX_SCHEMA_VERSION } from "./index-diagnostics.js";
-import { indexPolicyFingerprint } from "./index-policy.js";
+import { indexPolicyFingerprint, ingestionPolicyFingerprint, LEXICAL_POLICY_VERSION, lexicalPolicyCurrent, } from "./index-policy.js";
 import { withIndexWriteLock } from "./index-write-lock.js";
 import { activeIngestionMetrics, createIngestionMetricsCollector, runWithIngestionMetrics, } from "./ingestion-metrics.js";
 import { canResumeIngestion, compactIngestionState, createIngestionRunState, finishIngestionState, generationTableName, ingestionProgress, readIngestionState, reconcileIngestionFile, removeStagedIndexManifest, resumeIngestionState, updateIngestionFile, writeIngestionState, } from "./ingestion-state.js";
@@ -87,7 +87,8 @@ async function ingestUnlocked(config, options, connection, signal) {
     try {
         throwIfAborted(signal);
         const requestedBatchSize = ingestFileBatchSize(options.batchSize);
-        const policyFingerprint = indexPolicyFingerprint(config);
+        const searchPolicyFingerprint = indexPolicyFingerprint(config);
+        const policyFingerprint = ingestionPolicyFingerprint(config);
         const existingManifest = await readIndexManifest(config);
         const storedState = await readIngestionState(config);
         const storedEmptyFiles = await readEmptyTextFiles(config);
@@ -101,12 +102,14 @@ async function ingestUnlocked(config, options, connection, signal) {
         const existingTable = await openRowsTable(config, connection);
         const manifestCompatible = !options.rebuild &&
             existingManifest?.schemaVersion === INDEX_SCHEMA_VERSION &&
-            existingManifest.indexPolicyFingerprint === policyFingerprint &&
+            existingManifest.indexPolicyFingerprint === searchPolicyFingerprint &&
+            lexicalPolicyCurrent(existingManifest) &&
             existingManifest.indexedFiles !== undefined;
         const policyRebuild = !options.rebuild &&
             existingManifest !== null &&
             (existingManifest.schemaVersion !== INDEX_SCHEMA_VERSION ||
-                existingManifest.indexPolicyFingerprint !== policyFingerprint);
+                existingManifest.indexPolicyFingerprint !== searchPolicyFingerprint ||
+                !lexicalPolicyCurrent(existingManifest));
         const canReuse = manifestCompatible && existingTable !== null;
         const previousIndexedFiles = canReuse ? (existingManifest.indexedFiles ?? []) : [];
         const previousEmptyFiles = canReuse ? storedEmptyFiles : [];
@@ -461,7 +464,7 @@ async function vectorRowsForChunks(chunks, config, signal) {
             }
             rows.push({
                 ...chunk,
-                searchText: chunkSearchText(chunk),
+                searchText: chunkLexicalText(chunk),
                 vector,
                 embeddingProvider: config.embeddingProvider,
                 embeddingModel: config.embeddingModel,
@@ -519,7 +522,8 @@ async function manifestForState(state, config, connection) {
         embeddingModel: config.embeddingModel,
         embeddingModelRevision: config.embeddingModelRevision,
         embeddingModelDigest: config.embeddingModelDigest,
-        indexPolicyFingerprint: state.policyFingerprint,
+        indexPolicyFingerprint: indexPolicyFingerprint(config),
+        lexicalPolicyVersion: LEXICAL_POLICY_VERSION,
         ...(firstRow ? { vectorDimension: firstRow.vector.length } : {}),
         vectorDistanceMetric: VECTOR_DISTANCE_METRIC,
         chunkSize: config.chunkSize,