@jcode.labs/ragmir 4.2.2 → 5.0.0

package/dist/workload.js.map

@@ -1 +1 @@
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package/examples/document-evidence-benchmark/.ragmir/config.json

@@ -1,23 +1,14 @@
 {
-  "privacyProfile": "private",
   "retrievalProfile": "balanced",
-  "acceptedRisks": [],
   "rawDir": "raw",
   "storageDir": ".ragmir/storage",
   "sourcesFile": ".ragmir/sources.txt",
-  "accessLogPath": ".ragmir/access.log",
   "embeddingModelPath": ".ragmir/models",
   "tableName": "chunks",
   "embeddingProvider": "local-hash",
   "embeddingModel": "intfloat/multilingual-e5-small",
   "embeddingModelRevision": "main",
   "transformersAllowRemoteModels": false,
-  "redaction": {
-    "enabled": true,
-    "builtIn": true,
-    "patterns": []
-  },
-  "accessLog": true,
   "mcpMaxTopK": 10,
   "mcpMaxOutputBytes": 32768,
   "topK": 5,

package/examples/document-evidence-benchmark/README.md

@@ -1,8 +1,8 @@
 # Document evidence benchmark
 
 A deterministic, public-safe benchmark for the retrieval and citation quality a coding agent
-receives from Ragmir. Six golden queries require the expected path and an exact file, line, chunk,
-or PDF-page citation. The fictional corpus runs offline with `local-hash`.
+receives from Ragmir as the retrieval layer in agentic RAG. Six golden queries require the expected
+path and an exact file, line, chunk, or PDF-page citation. The fictional corpus runs offline with `local-hash`.
 
 ## What passes
 
@@ -28,6 +28,8 @@ ingestion and evaluation pipeline.
 
 ## Run it
 
+From a checkout of the Ragmir repository, start at its root:
+
 ```bash
 pnpm install --frozen-lockfile
 pnpm build
@@ -50,5 +52,5 @@ into an ignored workspace. Record the smallest expected source set and exact coo
 the source is stable. Never commit private documents, queries, or reports.
 
 A perfect score proves this fixture, not universal retrieval quality. Continue with the
-[confidential local RAG demo](../sovereign-rag-demo/README.md) or
+[local retrieval demo](../sovereign-rag-demo/README.md) or
 [Core README](../../README.md).

package/examples/document-evidence-benchmark/raw/rfp/security-questionnaire.md

@@ -4,7 +4,7 @@ Question: Does the proposed retrieval layer require a hosted account, product te
 write access to the repository?
 
 Answer: No hosted account is required. The default mode runs locally with no telemetry. MCP access is
-read-focused: the agent can ask for status, prompt-routing advice, search results, cited answers,
+read-focused: the agent can ask for status, search results, citation expansion,
 audits, evaluation results, usage summaries, and security posture, but it does not receive a
 destructive repository tool from Ragmir.
 

package/examples/library-api-demo/README.md

@@ -1,17 +1,20 @@
 # Library API demo
 
 A runnable smoke test for the public `@jcode.labs/ragmir` TypeScript API. It opens one persistent
-client, ingests a fictional local corpus, retrieves cited passages, returns retrieval-only context,
-and reports status through the same package name an external consumer imports.
+client, ingests a fictional local corpus, searches and expands cited passages, and reports status
+through the same package name an external consumer imports. This is the retrieval portion of an
+agentic RAG application; your agent or chat supplies the reasoning and generation model.
 
 ## Run it
 
+From a checkout of the Ragmir repository, start at its root:
+
 ```bash
 pnpm install --frozen-lockfile
 pnpm example
 ```
 
-The root command builds the packages and runs [`run.mjs`](./run.mjs). Package self-reference points
+The root command builds Core and runs [`run.mjs`](./run.mjs). Package self-reference points
 to this checkout's `packages/ragmir-core/dist`, never the npm release. To rerun after a build:
 
 ```bash
@@ -27,16 +30,22 @@ const ragmir = await createRagmirClient({ cwd: projectRoot })
 try {
   await ragmir.ingest({ rebuild: true, timeoutMs: 30_000 })
   const results = await ragmir.search("offline retrieval approval", { topK: 3 })
-  const context = await ragmir.ask("What evidence supports offline operation?", { topK: 3 })
+  const evidence = results[0] ? await ragmir.expandCitation(results[0].citation) : undefined
   const status = await ragmir.status()
 } finally {
   await ragmir.close()
 }
 ```
 
-The demo proves `ingest`, `search`, `ask`, and `status` in order. `ask` returns cited context without
-LLM synthesis. Reuse one client per project root in a long-running process; one-shot top-level
-functions remain available.
+The demo exercises `ingest`, `search`, `expandCitation`, and `status` in order. Expansion returns
+source context. Reuse one client per project root in a long-running process; one-shot top-level
+functions remain available. An agent can search again when the first passages do not answer its
+question, then pass the selected evidence to its model.
+
+The same API works with a local chat, a model on your own server or private cloud, or a cloud model
+provider. The consuming application owns that connection. Retrieved text is not masked, so choose
+where it may be sent and how the consumer stores or logs it. See the
+[MCP and Ollama integration guide](../../../../docs/agent-integration.md).
 
 The script shares the sibling demo's synthetic Markdown, CSV, JSONL, YAML, and custom-text corpus.
 It uses offline `local-hash`, writes only ignored `.ragmir/storage`, downloads no model, and contains
@@ -45,6 +54,6 @@ private tests.
 
 | Need | Continue with |
 | --- | --- |
-| Complete CLI workflow | [Confidential local RAG demo](../sovereign-rag-demo/README.md) |
+| Complete CLI workflow | [Local retrieval demo](../sovereign-rag-demo/README.md) |
 | Exact path and citation gates | [Document evidence benchmark](../document-evidence-benchmark/README.md) |
 | Every exported option | [TypeScript API reference](../../../../docs/api-reference.md) |

package/examples/library-api-demo/run.mjs

@@ -1,7 +1,7 @@
 #!/usr/bin/env node
 // Local library smoke for @jcode.labs/ragmir.
 //
-// This exercises the public TypeScript API (ingest -> search -> ask -> audit) the
+// This exercises the public TypeScript API (ingest -> search -> expand -> status) the
 // exact way an external consumer would `import` it, but Node self-referencing
 // resolves "@jcode.labs/ragmir" to THIS repo's local build (packages/ragmir-core/dist),
 // never the npm-published version. That is the point of the demo: while developing
@@ -34,7 +34,7 @@ async function main() {
     const ingested = await ragmir.ingest({ rebuild: true, timeoutMs: 30_000 })
     console.log(
       `indexed ${ingested.indexedFiles}/${ingested.supportedFiles} supported files, ` +
-        `${ingested.chunks} chunks, ${ingested.redactions} redactions`,
+        `${ingested.chunks} chunks`,
     )
 
     heading('search "offline retrieval approval"')
@@ -45,10 +45,10 @@ async function main() {
       )
     }
 
-    heading('ask "What evidence supports offline operation?"')
-    const answer = await ragmir.ask("What evidence supports offline operation?", { topK: 3 })
-    console.log(`${answer.sources.length} cited sources`)
-    console.log(answer.answer)
+    if (passages[0]) {
+      heading("expand one citation")
+      console.log(await ragmir.expandCitation(passages[0].citation))
+    }
 
     heading("status")
     const status = await ragmir.status()

package/examples/sovereign-rag-demo/.ragmir/config.json

@@ -1,23 +1,14 @@
 {
-  "privacyProfile": "private",
   "retrievalProfile": "balanced",
-  "acceptedRisks": [],
   "rawDir": "raw",
   "storageDir": ".ragmir/storage",
   "sourcesFile": ".ragmir/sources.txt",
-  "accessLogPath": ".ragmir/access.log",
   "embeddingModelPath": ".ragmir/models",
   "tableName": "chunks",
   "embeddingProvider": "local-hash",
   "embeddingModel": "intfloat/multilingual-e5-small",
   "embeddingModelRevision": "main",
   "transformersAllowRemoteModels": false,
-  "redaction": {
-    "enabled": true,
-    "builtIn": true,
-    "patterns": []
-  },
-  "accessLog": true,
   "mcpMaxTopK": 10,
   "mcpMaxOutputBytes": 32768,
   "topK": 5,
@@ -25,5 +16,7 @@
   "embeddingBatchSize": 16,
   "chunkSize": 900,
   "chunkOverlap": 120,
-  "includeExtensions": [".evidence"]
+  "includeExtensions": [
+    ".evidence"
+  ]
 }

package/examples/sovereign-rag-demo/README.md

@@ -1,8 +1,14 @@
-# Confidential local RAG demo
+# Local retrieval demo for agentic RAG
 
 A complete fictional workspace for learning how agents and scripts retrieve cited project evidence
-with Ragmir. It covers multiple formats, privacy checks, unsupported files, golden queries, and
-agent access while keeping corpus and index local with offline `local-hash` retrieval.
+with Ragmir. It covers multiple formats, local security checks, unsupported files, golden queries,
+and agent access with offline `local-hash` retrieval. Ragmir supplies citations; the consuming
+agent chooses searches, expands evidence, and generates with its own model.
+
+The corpus is fictional. Local retrieval keeps the files and index on the machine running Ragmir;
+connecting an agent or chat can send excerpts elsewhere. A local model can keep them on-device, a
+self-hosted model can process them on your server or private cloud, and a cloud provider receives
+what the consuming app sends. Review that complete path before using confidential documents.
 
 ## Scenario
 
@@ -17,6 +23,8 @@ agent access while keeping corpus and index local with offline `local-hash` retr
 
 ## Run the workflow
 
+From a checkout of the Ragmir repository, start at its root:
+
 ```bash
 pnpm install --frozen-lockfile
 pnpm build
@@ -29,8 +37,7 @@ chmod 700 raw
 node ../../dist/cli.js security-audit
 node ../../dist/cli.js ingest --rebuild
 node ../../dist/cli.js search "offline retrieval approval"
-node ../../dist/cli.js ask "What evidence supports offline operation?"
-node ../../dist/cli.js research "sovereign deployment evidence" --compact
+node ../../dist/cli.js search "sovereign deployment evidence" --compact
 node ../../dist/cli.js evaluate --golden golden-queries.json --fail-under 1
 node ../../dist/cli.js audit --unsupported
 node ../../dist/cli.js status
@@ -38,14 +45,13 @@ node ../../dist/cli.js status
 
 `init` is idempotent. The security audit intentionally warns that `.ragmir/` is not fully ignored
 because this public fixture commits its configuration and source list. Generated storage, models,
-reports, audio, logs, and salts remain ignored. Private projects should ignore the complete
+reports remain ignored. Private projects should ignore the complete
 `.ragmir/` directory.
 
 Expected results:
 
-- search and ask identify source paths and chunks;
-- `ask` returns evidence, not a generated answer;
-- `research` combines bounded queries and source diagnostics;
+- search identifies source paths and chunks;
+- agents can expand selected citations and refine queries;
 - every golden query finds its expected source;
 - the audit explains why HEIC was skipped and suggests local OCR;
 - status confirms the active provider and local index.
@@ -55,14 +61,17 @@ Useful queries include `dataset residency`, `incident containment evidence`,
 
 ## Connect an agent
 
-In a real project, `rgr setup` writes an ignored MCP helper. A compatible agent can then follow:
+In a real project, `rgr setup` writes an ignored MCP helper. Connect it to a compatible agent and
+choose the model independently. The agent can search, expand citations, and refine its query before
+writing a response. For example:
 
 ```text
 Use Ragmir to search for "offline retrieval approval" and write a cited report under
 .ragmir/reports/demo-sovereign-rag.md. Mention unsupported or stale files reported by the audit.
 ```
 
-Keep retrieved reports under ignored local state.
+Keep retrieved reports under ignored local state. The [agent integration guide](../../../../docs/agent-integration.md)
+shows the MCP connection and an example chat flow with a local Ollama model.
 
 ## Compare semantic retrieval
 
@@ -72,7 +81,7 @@ The committed configuration uses offline lexical/hash retrieval:
 { "embeddingProvider": "local-hash" }
 ```
 
-For a deliberate semantic comparison, prepare a Transformers.js model locally, set
+For a deliberate semantic comparison, install `@huggingface/transformers`, prepare a model locally, set
 `embeddingProvider`, `embeddingModel`, `embeddingModelRevision`, `embeddingModelPath`, and
 `transformersAllowRemoteModels: false`, then rebuild and rerun evaluation. Keep remote loading off.
 A lower semantic score is a tuning signal, never a reason to weaken a quality gate.

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@jcode.labs/ragmir",
-  "version": "4.2.2",
-  "description": "Open-source confidential local RAG for coding agents, with offline cited retrieval through CLI, MCP, and TypeScript.",
+  "version": "5.0.0",
+  "description": "Open-source retrieval for agentic RAG: local document search, exact citations, OCR, CLI, MCP, and TypeScript.",
   "type": "module",
   "license": "AGPL-3.0-only",
   "author": {
@@ -13,11 +13,10 @@
     "ragmir",
     "open-source",
     "rag",
-    "confidential-rag",
+    "agentic-rag",
     "ai-agents",
     "coding-agents",
     "knowledge-base",
-    "confidential-data",
     "offline-first",
     "cited-retrieval",
     "local-first",
@@ -39,7 +38,7 @@
     "url": "https://github.com/jcode-works/jcode-ragmir/issues"
   },
   "engines": {
-    "node": ">=22"
+    "node": ">=22.12.0"
   },
   "exports": {
     ".": {
@@ -48,8 +47,6 @@
     }
   },
   "bin": {
-    "ragmir": "dist/cli-entry.js",
-    "kb": "dist/cli-entry.js",
     "rgr": "dist/cli-entry.js"
   },
   "files": [
@@ -65,42 +62,35 @@
     "access": "public"
   },
   "dependencies": {
-    "@huggingface/transformers": "^4.2.0",
     "@lancedb/lancedb": "^0.30.0",
     "@modelcontextprotocol/sdk": "^1.30.0",
-    "commander": "^14.0.3",
+    "commander": "^15.0.0",
     "fast-glob": "^3.3.3",
     "fflate": "^0.8.3",
-    "html-to-text": "^10.0.0",
-    "mammoth": "^1.12.1",
+    "html-to-text": "^10.0.1",
+    "mammoth": "^1.12.3",
     "picocolors": "^1.1.1",
     "read-excel-file": "^9.3.10",
-    "safe-regex2": "^5.1.1",
     "unpdf": "^1.8.1",
-    "yaml": "^2.9.0",
-    "zod": "^4.1.13"
+    "yaml": "^2.9.1",
+    "zod": "^4.6.5"
   },
   "peerDependencies": {
-    "@jcode.labs/ragmir-chat": "4.2.2",
-    "@jcode.labs/ragmir-tts": "4.2.2"
+    "@huggingface/transformers": "^4.3.0"
   },
   "peerDependenciesMeta": {
-    "@jcode.labs/ragmir-chat": {
-      "optional": true
-    },
-    "@jcode.labs/ragmir-tts": {
+    "@huggingface/transformers": {
       "optional": true
     }
   },
   "devDependencies": {
+    "@huggingface/transformers": "^4.3.0",
     "@types/html-to-text": "^9.0.4",
-    "@types/node": "^22.20.1",
+    "@types/node": "^22.20.3",
     "apache-arrow": "^18.1.0",
-    "publint": "^0.3.23",
-    "typescript": "^6.0.2",
-    "vitest": "^4.1.10",
-    "@jcode.labs/ragmir-chat": "4.2.2",
-    "@jcode.labs/ragmir-tts": "4.2.2"
+    "publint": "^0.3.24",
+    "typescript": "^7.0.2",
+    "vitest": "^5.0.1"
   },
   "scripts": {
     "bench:compare": "node benchmarks/compare.mjs",
@@ -126,11 +116,12 @@
     "bench:storage": "pnpm build && node benchmarks/storage-maintenance.mjs",
     "bench:status": "pnpm build && node benchmarks/status.mjs",
     "bench:vector-index": "pnpm build && node benchmarks/vector-index.mjs",
-    "build": "tsc -p tsconfig.json",
-    "check": "pnpm --filter @jcode.labs/ragmir-tts build && pnpm --filter @jcode.labs/ragmir-chat build && tsc -p tsconfig.json --noEmit",
+    "build": "node scripts/clean-dist.mjs && tsc -p tsconfig.json",
+    "check": "tsc -p tsconfig.json --noEmit",
     "mcp:smoke": "pnpm build && node scripts/mcp-smoke.mjs",
     "package:check": "publint",
-    "test": "pnpm --filter @jcode.labs/ragmir-tts build && pnpm --filter @jcode.labs/ragmir-chat build && pnpm build && vitest run",
-    "test:coverage": "pnpm --filter @jcode.labs/ragmir-tts build && pnpm --filter @jcode.labs/ragmir-chat build && pnpm build && vitest run --coverage"
+    "test": "pnpm build && vitest run",
+    "test:coverage": "pnpm build && vitest run --coverage",
+    "bench:developer-evidence": "pnpm build && node benchmarks/developer-evidence.mjs"
   }
 }