@jcode.labs/ragmir 2.7.0 → 2.9.0

package/dist/config.js

@@ -5,8 +5,13 @@ import { z } from "zod";
 import { CONFIG_PATH, DEFAULT_CONFIG, LEGACY_CONFIG_PATH, LEGACY_DEFAULT_CONFIG, } from "./defaults.js";
 import { isRecord } from "./guards.js";
 const embeddingProviderSchema = z.enum(["local-hash", "transformers"]);
+const privacyProfileSchema = z.enum(["strict", "private", "trusted", "custom"]);
+const retrievalProfileSchema = z.enum(["fast", "balanced", "quality", "custom"]);
 const rawConfigSchema = z
     .object({
+    privacyProfile: privacyProfileSchema.default(DEFAULT_CONFIG.privacyProfile),
+    retrievalProfile: retrievalProfileSchema.default(DEFAULT_CONFIG.retrievalProfile),
+    acceptedRisks: z.array(z.string().min(1)).default(DEFAULT_CONFIG.acceptedRisks),
     rawDir: z.string().default(DEFAULT_CONFIG.rawDir),
     storageDir: z.string().default(DEFAULT_CONFIG.storageDir),
     sourcesFile: z.string().default(DEFAULT_CONFIG.sourcesFile),
@@ -16,6 +21,7 @@ const rawConfigSchema = z
     tableName: z.string().default(DEFAULT_CONFIG.tableName),
     embeddingProvider: embeddingProviderSchema.default(DEFAULT_CONFIG.embeddingProvider),
     embeddingModel: z.string().default(DEFAULT_CONFIG.embeddingModel),
+    embeddingModelRevision: z.string().min(1).default(DEFAULT_CONFIG.embeddingModelRevision),
     transformersAllowRemoteModels: z
         .boolean()
         .default(DEFAULT_CONFIG.transformersAllowRemoteModels),
@@ -93,39 +99,76 @@ export async function loadConfig(start = process.cwd()) {
     }
     const defaults = projectConfig.legacy ? LEGACY_DEFAULT_CONFIG : DEFAULT_CONFIG;
     const parsed = rawConfigSchema.parse({ ...defaults, ...raw });
-    const withEnv = applyEnv(parsed);
-    if (withEnv.chunkOverlap >= withEnv.chunkSize) {
+    const withProfile = applyRetrievalProfile(parsed, raw);
+    const withEnv = applyEnv(withProfile);
+    const effective = applyPrivacyFloor(withEnv);
+    if (effective.chunkOverlap >= effective.chunkSize) {
         throw new Error("chunkOverlap must be lower than chunkSize.");
     }
     return {
         projectRoot: projectConfig.projectRoot,
-        rawDir: resolveFromRoot(projectConfig.projectRoot, withEnv.rawDir),
-        storageDir: resolveFromRoot(projectConfig.projectRoot, withEnv.storageDir),
-        sourcesFile: resolveFromRoot(projectConfig.projectRoot, withEnv.sourcesFile),
-        sources: withEnv.sources,
-        accessLogPath: resolveFromRoot(projectConfig.projectRoot, withEnv.accessLogPath),
-        embeddingModelPath: resolveFromRoot(projectConfig.projectRoot, withEnv.embeddingModelPath),
-        tableName: withEnv.tableName,
-        embeddingProvider: withEnv.embeddingProvider,
-        embeddingModel: withEnv.embeddingModel,
-        transformersAllowRemoteModels: withEnv.transformersAllowRemoteModels,
-        redaction: withEnv.redaction,
-        accessLog: withEnv.accessLog,
-        mcpMaxTopK: withEnv.mcpMaxTopK,
-        topK: withEnv.topK,
-        chunkSize: withEnv.chunkSize,
-        chunkOverlap: withEnv.chunkOverlap,
-        maxFileBytes: withEnv.maxFileBytes,
-        ingestConcurrency: withEnv.ingestConcurrency,
-        embeddingBatchSize: withEnv.embeddingBatchSize,
-        hybridTextScanLimit: withEnv.hybridTextScanLimit,
-        includeExtensions: normalizeExtensions(withEnv.includeExtensions),
-        pdfOcrCommand: withEnv.pdfOcrCommand,
-        pdfOcrTimeoutMs: withEnv.pdfOcrTimeoutMs,
-        imageOcrCommand: withEnv.imageOcrCommand,
-        imageOcrTimeoutMs: withEnv.imageOcrTimeoutMs,
-        legacyWordCommand: withEnv.legacyWordCommand,
-        legacyWordTimeoutMs: withEnv.legacyWordTimeoutMs,
+        privacyProfile: effective.privacyProfile,
+        retrievalProfile: effective.retrievalProfile,
+        acceptedRisks: effective.acceptedRisks,
+        rawDir: resolveFromRoot(projectConfig.projectRoot, effective.rawDir),
+        storageDir: resolveFromRoot(projectConfig.projectRoot, effective.storageDir),
+        sourcesFile: resolveFromRoot(projectConfig.projectRoot, effective.sourcesFile),
+        sources: effective.sources,
+        accessLogPath: resolveFromRoot(projectConfig.projectRoot, effective.accessLogPath),
+        embeddingModelPath: resolveFromRoot(projectConfig.projectRoot, effective.embeddingModelPath),
+        tableName: effective.tableName,
+        embeddingProvider: effective.embeddingProvider,
+        embeddingModel: effective.embeddingModel,
+        embeddingModelRevision: effective.embeddingModelRevision,
+        transformersAllowRemoteModels: effective.transformersAllowRemoteModels,
+        redaction: effective.redaction,
+        accessLog: effective.accessLog,
+        mcpMaxTopK: effective.mcpMaxTopK,
+        topK: effective.topK,
+        chunkSize: effective.chunkSize,
+        chunkOverlap: effective.chunkOverlap,
+        maxFileBytes: effective.maxFileBytes,
+        ingestConcurrency: effective.ingestConcurrency,
+        embeddingBatchSize: effective.embeddingBatchSize,
+        hybridTextScanLimit: effective.hybridTextScanLimit,
+        includeExtensions: normalizeExtensions(effective.includeExtensions),
+        pdfOcrCommand: effective.pdfOcrCommand,
+        pdfOcrTimeoutMs: effective.pdfOcrTimeoutMs,
+        imageOcrCommand: effective.imageOcrCommand,
+        imageOcrTimeoutMs: effective.imageOcrTimeoutMs,
+        legacyWordCommand: effective.legacyWordCommand,
+        legacyWordTimeoutMs: effective.legacyWordTimeoutMs,
+    };
+}
+function applyRetrievalProfile(config, raw) {
+    if (config.retrievalProfile === "fast") {
+        return {
+            ...config,
+            topK: raw.topK === undefined ? 5 : config.topK,
+            hybridTextScanLimit: raw.hybridTextScanLimit === undefined ? 2_000 : config.hybridTextScanLimit,
+        };
+    }
+    if (config.retrievalProfile === "quality") {
+        return {
+            ...config,
+            topK: raw.topK === undefined ? 12 : config.topK,
+            hybridTextScanLimit: raw.hybridTextScanLimit === undefined ? 10_000 : config.hybridTextScanLimit,
+        };
+    }
+    return config;
+}
+function applyPrivacyFloor(config) {
+    if (config.privacyProfile !== "strict") {
+        return config;
+    }
+    return {
+        ...config,
+        transformersAllowRemoteModels: false,
+        redaction: { ...config.redaction, enabled: true, builtIn: true },
+        mcpMaxTopK: Math.min(config.mcpMaxTopK, 5),
+        pdfOcrCommand: [],
+        imageOcrCommand: [],
+        legacyWordCommand: [],
     };
 }
 function resolveFromRoot(projectRoot, input) {
@@ -140,6 +183,7 @@ function applyEnv(config) {
         accessLogPath: readStringEnv("RAGMIR_ACCESS_LOG_PATH", "KB_ACCESS_LOG_PATH", config.accessLogPath),
         embeddingProvider: readEmbeddingProviderEnv("RAGMIR_EMBEDDING_PROVIDER", "KB_EMBEDDING_PROVIDER", config.embeddingProvider),
         embeddingModel: readStringEnv("RAGMIR_EMBEDDING_MODEL", "KB_EMBEDDING_MODEL", config.embeddingModel),
+        embeddingModelRevision: readStringEnv("RAGMIR_EMBEDDING_MODEL_REVISION", "KB_EMBEDDING_MODEL_REVISION", config.embeddingModelRevision),
         embeddingModelPath: readStringEnv("RAGMIR_EMBEDDING_MODEL_PATH", "KB_EMBEDDING_MODEL_PATH", config.embeddingModelPath),
         transformersAllowRemoteModels: readBooleanEnv("RAGMIR_TRANSFORMERS_ALLOW_REMOTE_MODELS", "KB_TRANSFORMERS_ALLOW_REMOTE_MODELS", config.transformersAllowRemoteModels),
         redaction: {

package/dist/config.js.map

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package/dist/defaults.d.ts

@@ -6,6 +6,7 @@ export declare const RAGMIR_RAW_DIR = ".ragmir/raw";
 export declare const CONFIG_PATH = ".ragmir/config.json";
 export declare const LEGACY_CONFIG_PATH = ".kb/config.json";
 export declare const DEFAULT_SKILL_TARGET_DIR = ".ragmir/skills";
+export declare const INDEX_MANIFEST_FILENAME = "index-manifest.json";
 export declare const RAGMIR_PROJECT_ROOT_ENV = "RAGMIR_PROJECT_ROOT";
 export declare const VECTOR_DISTANCE_METRIC = "l2";
 export declare const RAGMIR_GITIGNORE_ENTRY = ".ragmir/";

package/dist/defaults.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"defaults.d.ts","sourceRoot":"","sources":["../src/defaults.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AAExC,eAAO,MAAM,UAAU,YAAY,CAAA;AACnC,eAAO,MAAM,aAAa,QAAQ,CAAA;AAClC,eAAO,MAAM,kBAAkB,YAAY,CAAA;AAC3C,eAAO,MAAM,cAAc,gBAAsB,CAAA;AACjD,eAAO,MAAM,WAAW,wBAA8B,CAAA;AACtD,eAAO,MAAM,kBAAkB,oBAAiC,CAAA;AAChE,eAAO,MAAM,wBAAwB,mBAAyB,CAAA;AAE9D,eAAO,MAAM,uBAAuB,wBAAwB,CAAA;AAC5D,eAAO,MAAM,sBAAsB,OAAO,CAAA;AAE1C,eAAO,MAAM,sBAAsB,aAAmB,CAAA;AACtD,eAAO,MAAM,yBAAyB,SAAsB,CAAA;AAC5D,eAAO,MAAM,8BAA8B,aAA2B,CAAA;AACtE,eAAO,MAAM,uCAAuC,eAA6B,CAAA;AAEjF,eAAO,MAAM,cAAc,EAAE,IAAI,CAAC,MAAM,EAAE,aAAa,CAgCtD,CAAA;AAED,eAAO,MAAM,qBAAqB,EAAE,IAAI,CAAC,MAAM,EAAE,aAAa,CAM7D,CAAA"}
+{"version":3,"file":"defaults.d.ts","sourceRoot":"","sources":["../src/defaults.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AAExC,eAAO,MAAM,UAAU,YAAY,CAAA;AACnC,eAAO,MAAM,aAAa,QAAQ,CAAA;AAClC,eAAO,MAAM,kBAAkB,YAAY,CAAA;AAC3C,eAAO,MAAM,cAAc,gBAAsB,CAAA;AACjD,eAAO,MAAM,WAAW,wBAA8B,CAAA;AACtD,eAAO,MAAM,kBAAkB,oBAAiC,CAAA;AAChE,eAAO,MAAM,wBAAwB,mBAAyB,CAAA;AAC9D,eAAO,MAAM,uBAAuB,wBAAwB,CAAA;AAE5D,eAAO,MAAM,uBAAuB,wBAAwB,CAAA;AAC5D,eAAO,MAAM,sBAAsB,OAAO,CAAA;AAE1C,eAAO,MAAM,sBAAsB,aAAmB,CAAA;AACtD,eAAO,MAAM,yBAAyB,SAAsB,CAAA;AAC5D,eAAO,MAAM,8BAA8B,aAA2B,CAAA;AACtE,eAAO,MAAM,uCAAuC,eAA6B,CAAA;AAEjF,eAAO,MAAM,cAAc,EAAE,IAAI,CAAC,MAAM,EAAE,aAAa,CAoCtD,CAAA;AAED,eAAO,MAAM,qBAAqB,EAAE,IAAI,CAAC,MAAM,EAAE,aAAa,CAM7D,CAAA"}

package/dist/defaults.js

@@ -5,6 +5,7 @@ export const RAGMIR_RAW_DIR = `${RAGMIR_DIR}/raw`;
 export const CONFIG_PATH = `${RAGMIR_DIR}/config.json`;
 export const LEGACY_CONFIG_PATH = `${LEGACY_KB_DIR}/config.json`;
 export const DEFAULT_SKILL_TARGET_DIR = `${RAGMIR_DIR}/skills`;
+export const INDEX_MANIFEST_FILENAME = "index-manifest.json";
 export const RAGMIR_PROJECT_ROOT_ENV = "RAGMIR_PROJECT_ROOT";
 export const VECTOR_DISTANCE_METRIC = "l2";
 export const RAGMIR_GITIGNORE_ENTRY = `${RAGMIR_DIR}/`;
@@ -12,6 +13,9 @@ export const LEGACY_KB_GITIGNORE_ENTRY = `${LEGACY_KB_DIR}/`;
 export const LEGACY_PRIVATE_GITIGNORE_ENTRY = `${LEGACY_PRIVATE_DIR}/`;
 export const LEGACY_PRIVATE_GITIGNORE_FALLBACK_ENTRY = `${LEGACY_PRIVATE_DIR}/**`;
 export const DEFAULT_CONFIG = {
+    privacyProfile: "private",
+    retrievalProfile: "balanced",
+    acceptedRisks: [],
     rawDir: RAGMIR_RAW_DIR,
     storageDir: `${RAGMIR_DIR}/storage`,
     sourcesFile: `${RAGMIR_DIR}/sources.txt`,
@@ -20,7 +24,8 @@ export const DEFAULT_CONFIG = {
     embeddingModelPath: `${RAGMIR_DIR}/models`,
     tableName: "chunks",
     embeddingProvider: "local-hash",
-    embeddingModel: "mixedbread-ai/mxbai-embed-xsmall-v1",
+    embeddingModel: "intfloat/multilingual-e5-small",
+    embeddingModelRevision: "main",
     transformersAllowRemoteModels: false,
     redaction: {
         enabled: true,

package/dist/defaults.js.map

@@ -1 +1 @@
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+{"version":3,"file":"defaults.js","sourceRoot":"","sources":["../src/defaults.ts"],"names":[],"mappings":"AAEA,MAAM,CAAC,MAAM,UAAU,GAAG,SAAS,CAAA;AACnC,MAAM,CAAC,MAAM,aAAa,GAAG,KAAK,CAAA;AAClC,MAAM,CAAC,MAAM,kBAAkB,GAAG,SAAS,CAAA;AAC3C,MAAM,CAAC,MAAM,cAAc,GAAG,GAAG,UAAU,MAAM,CAAA;AACjD,MAAM,CAAC,MAAM,WAAW,GAAG,GAAG,UAAU,cAAc,CAAA;AACtD,MAAM,CAAC,MAAM,kBAAkB,GAAG,GAAG,aAAa,cAAc,CAAA;AAChE,MAAM,CAAC,MAAM,wBAAwB,GAAG,GAAG,UAAU,SAAS,CAAA;AAC9D,MAAM,CAAC,MAAM,uBAAuB,GAAG,qBAAqB,CAAA;AAE5D,MAAM,CAAC,MAAM,uBAAuB,GAAG,qBAAqB,CAAA;AAC5D,MAAM,CAAC,MAAM,sBAAsB,GAAG,IAAI,CAAA;AAE1C,MAAM,CAAC,MAAM,sBAAsB,GAAG,GAAG,UAAU,GAAG,CAAA;AACtD,MAAM,CAAC,MAAM,yBAAyB,GAAG,GAAG,aAAa,GAAG,CAAA;AAC5D,MAAM,CAAC,MAAM,8BAA8B,GAAG,GAAG,kBAAkB,GAAG,CAAA;AACtE,MAAM,CAAC,MAAM,uCAAuC,GAAG,GAAG,kBAAkB,KAAK,CAAA;AAEjF,MAAM,CAAC,MAAM,cAAc,GAAgC;IACzD,cAAc,EAAE,SAAS;IACzB,gBAAgB,EAAE,UAAU;IAC5B,aAAa,EAAE,EAAE;IACjB,MAAM,EAAE,cAAc;IACtB,UAAU,EAAE,GAAG,UAAU,UAAU;IACnC,WAAW,EAAE,GAAG,UAAU,cAAc;IACxC,OAAO,EAAE,EAAE;IACX,aAAa,EAAE,GAAG,UAAU,aAAa;IACzC,kBAAkB,EAAE,GAAG,UAAU,SAAS;IAC1C,SAAS,EAAE,QAAQ;IACnB,iBAAiB,EAAE,YAAY;IAC/B,cAAc,EAAE,gCAAgC;IAChD,sBAAsB,EAAE,MAAM;IAC9B,6BAA6B,EAAE,KAAK;IACpC,SAAS,EAAE;QACT,OAAO,EAAE,IAAI;QACb,OAAO,EAAE,IAAI;QACb,QAAQ,EAAE,EAAE;KACb;IACD,SAAS,EAAE,IAAI;IACf,UAAU,EAAE,EAAE;IACd,IAAI,EAAE,CAAC;IACP,SAAS,EAAE,IAAI;IACf,YAAY,EAAE,GAAG;IACjB,YAAY,EAAE,UAAU;IACxB,iBAAiB,EAAE,CAAC;IACpB,kBAAkB,EAAE,EAAE;IACtB,mBAAmB,EAAE,KAAK;IAC1B,iBAAiB,EAAE,EAAE;IACrB,aAAa,EAAE,EAAE;IACjB,eAAe,EAAE,OAAO;IACxB,eAAe,EAAE,EAAE;IACnB,iBAAiB,EAAE,OAAO;IAC1B,iBAAiB,EAAE,EAAE;IACrB,mBAAmB,EAAE,OAAO;CAC7B,CAAA;AAED,MAAM,CAAC,MAAM,qBAAqB,GAAgC;IAChE,GAAG,cAAc;IACjB,MAAM,EAAE,kBAAkB;IAC1B,UAAU,EAAE,GAAG,aAAa,UAAU;IACtC,WAAW,EAAE,GAAG,aAAa,cAAc;IAC3C,aAAa,EAAE,GAAG,aAAa,aAAa;CAC7C,CAAA"}

package/dist/destroy.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"destroy.d.ts","sourceRoot":"","sources":["../src/destroy.ts"],"names":[],"mappings":"AAKA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAEpD,wBAAsB,YAAY,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,kBAAkB,CAAC,CAenF"}
+{"version":3,"file":"destroy.d.ts","sourceRoot":"","sources":["../src/destroy.ts"],"names":[],"mappings":"AAQA,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAA;AAEpD,wBAAsB,YAAY,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,kBAAkB,CAAC,CAiBnF"}

package/dist/destroy.js

@@ -1,11 +1,15 @@
 import { existsSync } from "node:fs";
-import { rm } from "node:fs/promises";
+import { realpath, rm } from "node:fs/promises";
+import os from "node:os";
+import path from "node:path";
 import { recordAccess } from "./access-log.js";
 import { loadConfig } from "./config.js";
+import { INDEX_MANIFEST_FILENAME } from "./defaults.js";
 import { clearTransformersCache } from "./embeddings.js";
 export async function destroyIndex(cwd = process.cwd()) {
     const config = await loadConfig(cwd);
     const existed = existsSync(config.storageDir);
+    await assertSafeIndexStorage(config.projectRoot, config.storageDir, existed);
     await recordAccess(config, { action: "destroy-index" });
     await rm(config.storageDir, { recursive: true, force: true });
     // Release any cached Transformers.js pipelines so a subsequent re-ingest with
@@ -17,4 +21,22 @@ export async function destroyIndex(cwd = process.cwd()) {
         note: "Generated index removed. For forensic deletion guarantees, keep .ragmir/ on an encrypted volume and rotate/destroy the volume key.",
     };
 }
+async function assertSafeIndexStorage(projectRoot, storageDir, existed) {
+    const resolvedProjectRoot = await realpath(projectRoot);
+    const resolvedStorageDir = existed ? await realpath(storageDir) : path.resolve(storageDir);
+    const filesystemRoot = path.parse(resolvedStorageDir).root;
+    const homeDir = await realpath(os.homedir());
+    if (resolvedStorageDir === filesystemRoot ||
+        isSameOrAncestor(resolvedStorageDir, resolvedProjectRoot) ||
+        isSameOrAncestor(resolvedStorageDir, homeDir)) {
+        throw new Error(`Refusing to remove unsafe storageDir ${JSON.stringify(storageDir)}. Configure a dedicated Ragmir index directory.`);
+    }
+    if (existed && !existsSync(path.join(resolvedStorageDir, INDEX_MANIFEST_FILENAME))) {
+        throw new Error(`Refusing to remove ${JSON.stringify(storageDir)} because it does not contain ${INDEX_MANIFEST_FILENAME}.`);
+    }
+}
+function isSameOrAncestor(candidate, target) {
+    const relative = path.relative(candidate, target);
+    return relative === "" || (!relative.startsWith("..") && !path.isAbsolute(relative));
+}
 //# sourceMappingURL=destroy.js.map

package/dist/destroy.js.map

@@ -1 +1 @@
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+{"version":3,"file":"destroy.js","sourceRoot":"","sources":["../src/destroy.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAA;AACpC,OAAO,EAAE,QAAQ,EAAE,EAAE,EAAE,MAAM,kBAAkB,CAAA;AAC/C,OAAO,EAAE,MAAM,SAAS,CAAA;AACxB,OAAO,IAAI,MAAM,WAAW,CAAA;AAC5B,OAAO,EAAE,YAAY,EAAE,MAAM,iBAAiB,CAAA;AAC9C,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACxC,OAAO,EAAE,uBAAuB,EAAE,MAAM,eAAe,CAAA;AACvD,OAAO,EAAE,sBAAsB,EAAE,MAAM,iBAAiB,CAAA;AAGxD,MAAM,CAAC,KAAK,UAAU,YAAY,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,EAAE;IACpD,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,GAAG,CAAC,CAAA;IACpC,MAAM,OAAO,GAAG,UAAU,CAAC,MAAM,CAAC,UAAU,CAAC,CAAA;IAE7C,MAAM,sBAAsB,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,UAAU,EAAE,OAAO,CAAC,CAAA;IAE5E,MAAM,YAAY,CAAC,MAAM,EAAE,EAAE,MAAM,EAAE,eAAe,EAAE,CAAC,CAAA;IACvD,MAAM,EAAE,CAAC,MAAM,CAAC,UAAU,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAA;IAC7D,8EAA8E;IAC9E,0EAA0E;IAC1E,sBAAsB,EAAE,CAAA;IAExB,OAAO;QACL,UAAU,EAAE,MAAM,CAAC,UAAU;QAC7B,OAAO,EAAE,OAAO;QAChB,IAAI,EAAE,oIAAoI;KAC3I,CAAA;AACH,CAAC;AAED,KAAK,UAAU,sBAAsB,CACnC,WAAmB,EACnB,UAAkB,EAClB,OAAgB;IAEhB,MAAM,mBAAmB,GAAG,MAAM,QAAQ,CAAC,WAAW,CAAC,CAAA;IACvD,MAAM,kBAAkB,GAAG,OAAO,CAAC,CAAC,CAAC,MAAM,QAAQ,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,CAAA;IAC1F,MAAM,cAAc,GAAG,IAAI,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAC,IAAI,CAAA;IAC1D,MAAM,OAAO,GAAG,MAAM,QAAQ,CAAC,EAAE,CAAC,OAAO,EAAE,CAAC,CAAA;IAE5C,IACE,kBAAkB,KAAK,cAAc;QACrC,gBAAgB,CAAC,kBAAkB,EAAE,mBAAmB,CAAC;QACzD,gBAAgB,CAAC,kBAAkB,EAAE,OAAO,CAAC,EAC7C,CAAC;QACD,MAAM,IAAI,KAAK,CACb,wCAAwC,IAAI,CAAC,SAAS,CAAC,UAAU,CAAC,iDAAiD,CACpH,CAAA;IACH,CAAC;IAED,IAAI,OAAO,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,kBAAkB,EAAE,uBAAuB,CAAC,CAAC,EAAE,CAAC;QACnF,MAAM,IAAI,KAAK,CACb,sBAAsB,IAAI,CAAC,SAAS,CAAC,UAAU,CAAC,gCAAgC,uBAAuB,GAAG,CAC3G,CAAA;IACH,CAAC;AACH,CAAC;AAED,SAAS,gBAAgB,CAAC,SAAiB,EAAE,MAAc;IACzD,MAAM,QAAQ,GAAG,IAAI,CAAC,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC,CAAA;IACjD,OAAO,QAAQ,KAAK,EAAE,IAAI,CAAC,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAA;AACtF,CAAC"}

package/dist/doctor.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../src/doctor.ts"],"names":[],"mappings":"AAgBA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAE9C,wBAAsB,MAAM,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,YAAY,CAAC,CAmEvE"}
+{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../src/doctor.ts"],"names":[],"mappings":"AAgBA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAE9C,wBAAsB,MAAM,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,YAAY,CAAC,CA4FvE"}

package/dist/doctor.js

@@ -27,14 +27,28 @@ export async function doctor(cwd = process.cwd()) {
         manifestFound: manifest !== null,
         warning: freshnessWarning,
     };
+    const oversizedFiles = countSkippedByReason(auditReport.skippedFiles, "oversized");
+    const sensitiveFiles = countSkippedByReason(auditReport.skippedFiles, "sensitive-name");
+    const coverageComplete = auditReport.missingFromIndex.length === 0 &&
+        auditReport.staleInIndex.length === 0 &&
+        auditReport.emptyTextFiles.length === 0 &&
+        oversizedFiles === 0;
+    const operationalReady = initialized && chunksIndexed > 0 && coverageComplete;
+    const indexPolicyCurrent = freshnessWarning === null;
+    const privacyCompliant = securityReport.warnings.length === 0;
     const nextSteps = nextActions({
         initialized,
         supportedFiles: auditReport.supportedFiles.length,
+        supportedBytes: auditReport.supportedBytes,
+        largestFileBytes: auditReport.largestFileBytes,
         skippedFiles: auditReport.skippedFiles.length,
         unsupportedFiles: countSkippedByReason(auditReport.skippedFiles, "unsupported-extension"),
         chunksIndexed,
         missingFromIndex: auditReport.missingFromIndex.length,
         staleInIndex: auditReport.staleInIndex.length,
+        emptyTextFiles: auditReport.emptyTextFiles.length,
+        oversizedFiles,
+        sensitiveFiles,
         warnings: securityReport.warnings.length,
         embeddingProvider: config.embeddingProvider,
         agentKitInstalled,
@@ -54,21 +68,32 @@ export async function doctor(cwd = process.cwd()) {
         transformersAllowRemoteModels: config.transformersAllowRemoteModels,
         redactionEnabled: config.redaction.enabled,
         accessLog: config.accessLog,
+        privacyProfile: config.privacyProfile,
+        retrievalProfile: config.retrievalProfile,
         supportedFiles: auditReport.supportedFiles.length,
+        supportedBytes: auditReport.supportedBytes,
+        largestFileBytes: auditReport.largestFileBytes,
+        maxFileBytes: config.maxFileBytes,
         skippedFiles: auditReport.skippedFiles.length,
         unsupportedFiles: countSkippedByReason(auditReport.skippedFiles, "unsupported-extension"),
+        oversizedFiles,
+        sensitiveFiles,
+        emptyTextFiles: auditReport.emptyTextFiles.length,
         indexedFiles: auditReport.indexedFiles.length,
         chunksIndexed,
         missingFromIndex: auditReport.missingFromIndex.length,
         staleInIndex: auditReport.staleInIndex.length,
         securityWarnings: securityReport.warnings,
         indexFreshness,
-        ready: initialized &&
-            chunksIndexed > 0 &&
-            auditReport.missingFromIndex.length === 0 &&
-            auditReport.staleInIndex.length === 0 &&
-            securityReport.warnings.length === 0 &&
-            freshnessWarning === null,
+        ready: operationalReady && indexPolicyCurrent && privacyCompliant,
+        readiness: {
+            operationalReady,
+            coverageComplete,
+            indexPolicyCurrent,
+            privacyCompliant,
+            retrievalQualityVerified: false,
+            acceptedRisks: config.acceptedRisks,
+        },
         nextSteps,
     };
 }
@@ -98,13 +123,19 @@ function nextActions(input) {
     if (input.lexicalScanWarning) {
         steps.push(input.lexicalScanWarning);
     }
+    if (input.emptyTextFiles > 0) {
+        steps.push(`${input.emptyTextFiles} supported source file(s) produced no indexable text. Configure local OCR for scans/images, convert the files, or add extracted text, then re-ingest.`);
+    }
+    if (input.oversizedFiles > 0) {
+        steps.push(`${input.oversizedFiles} source file(s) exceed maxFileBytes. Run \`rgr audit --unsupported\`, then split the files or raise the limit only after reviewing the memory and parsing risk.`);
+    }
+    if (input.unsupportedFiles > 0 || input.sensitiveFiles > 0) {
+        steps.push("Run `rgr audit --unsupported` to review every intentionally skipped source file.");
+    }
     if (input.warnings > 0) {
         steps.push(`Run \`${input.run(["security-audit", "--strict"])}\` and fix the reported warnings.`);
     }
     if (steps.length === 0) {
-        if (input.unsupportedFiles > 0) {
-            steps.push("Run `rgr audit --unsupported` to inspect files skipped because their type is not supported.");
-        }
         if (input.embeddingProvider === "local-hash") {
             steps.push(`For natural-language Q&A, run \`${input.run(["models", "pull", "--enable"])}\`, then run \`${input.run(["ingest", "--rebuild"])}\`.`);
         }

package/dist/doctor.js.map

@@ -1 +1 @@
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package/dist/embeddings.d.ts

@@ -1,15 +1,18 @@
 import type { Config } from "./types.js";
+type EmbeddingInputType = "document" | "query";
 export interface PullEmbeddingModelResult {
     embeddingModel: string;
     embeddingModelPath: string;
 }
-export declare function embedTexts(texts: string[], config: Config): Promise<number[][]>;
+export declare function embedTexts(texts: string[], config: Config, inputType?: EmbeddingInputType): Promise<number[][]>;
 export declare function pullEmbeddingModel(config: Config): Promise<PullEmbeddingModelResult>;
 export declare function embedText(text: string, config: Config): Promise<number[]>;
+export declare function prepareEmbeddingText(text: string, model: string, inputType: EmbeddingInputType): string;
 /**
  * Release all cached Transformers.js pipelines. Used by `destroy-index` and on
  * embedding-config changes in long-lived processes (MCP server) so stale model
  * weights are not pinned in memory.
  */
 export declare function clearTransformersCache(): void;
+export {};
 //# sourceMappingURL=embeddings.d.ts.map

package/dist/embeddings.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"embeddings.d.ts","sourceRoot":"","sources":["../src/embeddings.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AAoBxC,MAAM,WAAW,wBAAwB;IACvC,cAAc,EAAE,MAAM,CAAA;IACtB,kBAAkB,EAAE,MAAM,CAAA;CAC3B;AAED,wBAAsB,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAUrF;AAED,wBAAsB,kBAAkB,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,wBAAwB,CAAC,CAe1F;AAED,wBAAsB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,CAM/E;AAsDD;;;;GAIG;AACH,wBAAgB,sBAAsB,IAAI,IAAI,CAE7C"}
+{"version":3,"file":"embeddings.d.ts","sourceRoot":"","sources":["../src/embeddings.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AAuBxC,KAAK,kBAAkB,GAAG,UAAU,GAAG,OAAO,CAAA;AAE9C,MAAM,WAAW,wBAAwB;IACvC,cAAc,EAAE,MAAM,CAAA;IACtB,kBAAkB,EAAE,MAAM,CAAA;CAC3B;AAED,wBAAsB,UAAU,CAC9B,KAAK,EAAE,MAAM,EAAE,EACf,MAAM,EAAE,MAAM,EACd,SAAS,GAAE,kBAA+B,GACzC,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAUrB;AAED,wBAAsB,kBAAkB,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,wBAAwB,CAAC,CAe1F;AAED,wBAAsB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,CAM/E;AAqBD,wBAAgB,oBAAoB,CAClC,IAAI,EAAE,MAAM,EACZ,KAAK,EAAE,MAAM,EACb,SAAS,EAAE,kBAAkB,GAC5B,MAAM,CAQR;AA+DD;;;;GAIG;AACH,wBAAgB,sBAAsB,IAAI,IAAI,CAE7C"}

package/dist/embeddings.js

@@ -4,6 +4,8 @@ import { tokenize } from "./text.js";
 const LOCAL_HASH_DIMENSIONS = 384;
 const LONG_TOKEN_MIN_LENGTH = 6;
 const LONG_TOKEN_WEIGHT = 1.4;
+const CHARACTER_NGRAM_LENGTH = 3;
+const CHARACTER_NGRAM_WEIGHT = 0.35;
 /**
  * Maximum number of Transformers.js pipelines kept live in the process. Each
  * pipeline pins ONNX runtime weights (often hundreds of MB), so a long-lived
@@ -13,14 +15,15 @@ const LONG_TOKEN_WEIGHT = 1.4;
  */
 const MAX_TRANSFORMERS_PIPELINES = 3;
 const transformersPipelines = new Map();
-export async function embedTexts(texts, config) {
+let transformersEnvironmentQueue = Promise.resolve();
+export async function embedTexts(texts, config, inputType = "document") {
     if (texts.length === 0) {
         return [];
     }
     if (config.embeddingProvider === "local-hash") {
         return texts.map(localHashEmbedding);
     }
-    return embedWithTransformers(texts, config);
+    return embedWithTransformers(texts, config, inputType);
 }
 export async function pullEmbeddingModel(config) {
     await mkdir(config.embeddingModelPath, { recursive: true });
@@ -39,24 +42,35 @@ export async function pullEmbeddingModel(config) {
     };
 }
 export async function embedText(text, config) {
-    const [embedding] = await embedTexts([text], config);
+    const [embedding] = await embedTexts([text], config, "query");
     if (!embedding) {
         throw new Error("No embedding returned for query.");
     }
     return embedding;
 }
-async function embedWithTransformers(texts, config) {
+async function embedWithTransformers(texts, config, inputType) {
     const extractor = await transformersExtractor(config);
-    const output = await extractor(texts, { pooling: "mean", normalize: true });
+    const preparedTexts = texts.map((text) => prepareEmbeddingText(text, config.embeddingModel, inputType));
+    const output = await extractor(preparedTexts, { pooling: "mean", normalize: true });
     const rows = tensorToEmbeddingRows(output);
     if (rows.length !== texts.length) {
         throw new Error(`Expected ${texts.length} embeddings, received ${rows.length}.`);
     }
     return rows;
 }
+export function prepareEmbeddingText(text, model, inputType) {
+    if (/(^|\/)(multilingual-)?e5-/iu.test(model)) {
+        return `${inputType === "query" ? "query" : "passage"}: ${text}`;
+    }
+    if (inputType === "query" && /(^|\/)mxbai-embed/iu.test(model)) {
+        return `Represent this sentence for searching relevant passages: ${text}`;
+    }
+    return text;
+}
 async function transformersExtractor(config) {
     const key = [
         config.embeddingModel,
+        config.embeddingModelRevision,
         config.embeddingModelPath,
         String(config.transformersAllowRemoteModels),
     ].join("\n");
@@ -67,15 +81,36 @@ async function transformersExtractor(config) {
         transformersPipelines.set(key, cached);
         return cached;
     }
-    const transformers = await import("@huggingface/transformers");
-    transformers.env.localModelPath = config.embeddingModelPath;
-    transformers.env.cacheDir = config.embeddingModelPath;
-    transformers.env.allowRemoteModels = config.transformersAllowRemoteModels;
-    const extractor = (await transformers.pipeline("feature-extraction", config.embeddingModel));
+    const extractor = await createTransformersExtractor(config);
     evictTransformersPipeline();
     transformersPipelines.set(key, extractor);
     return extractor;
 }
+async function createTransformersExtractor(config) {
+    const creation = transformersEnvironmentQueue.then(async () => {
+        const transformers = await import("@huggingface/transformers");
+        const previous = {
+            localModelPath: transformers.env.localModelPath,
+            cacheDir: transformers.env.cacheDir,
+            allowRemoteModels: transformers.env.allowRemoteModels,
+        };
+        transformers.env.localModelPath = config.embeddingModelPath;
+        transformers.env.cacheDir = config.embeddingModelPath;
+        transformers.env.allowRemoteModels = config.transformersAllowRemoteModels;
+        try {
+            return (await transformers.pipeline("feature-extraction", config.embeddingModel, {
+                revision: config.embeddingModelRevision,
+            }));
+        }
+        finally {
+            transformers.env.localModelPath = previous.localModelPath;
+            transformers.env.cacheDir = previous.cacheDir;
+            transformers.env.allowRemoteModels = previous.allowRemoteModels;
+        }
+    });
+    transformersEnvironmentQueue = creation.then(() => undefined, () => undefined);
+    return creation;
+}
 function evictTransformersPipeline() {
     while (transformersPipelines.size >= MAX_TRANSFORMERS_PIPELINES) {
         // Map iteration order is insertion order, so the first key is the least
@@ -99,10 +134,10 @@ function localHashEmbedding(text) {
     const vector = Array.from({ length: LOCAL_HASH_DIMENSIONS }, () => 0);
     const tokens = tokenize(text);
     for (const token of tokens) {
-        const hash = createHash("sha256").update(token).digest();
-        const index = hash.readUInt32BE(0) % LOCAL_HASH_DIMENSIONS;
-        const sign = (hash.at(4) ?? 0) % 2 === 0 ? 1 : -1;
-        vector[index] = (vector[index] ?? 0) + sign * tokenWeight(token);
+        addHashedFeature(vector, token, tokenWeight(token));
+        for (const ngram of characterNgrams(token)) {
+            addHashedFeature(vector, `ngram:${ngram}`, CHARACTER_NGRAM_WEIGHT);
+        }
     }
     const magnitude = Math.sqrt(vector.reduce((sum, value) => sum + value * value, 0));
     if (magnitude === 0) {
@@ -110,6 +145,19 @@ function localHashEmbedding(text) {
     }
     return vector.map((value) => value / magnitude);
 }
+function addHashedFeature(vector, feature, weight) {
+    const hash = createHash("sha256").update(feature).digest();
+    const index = hash.readUInt32BE(0) % LOCAL_HASH_DIMENSIONS;
+    const sign = (hash.at(4) ?? 0) % 2 === 0 ? 1 : -1;
+    vector[index] = (vector[index] ?? 0) + sign * weight;
+}
+function characterNgrams(token) {
+    const characters = [...token];
+    if (characters.length < CHARACTER_NGRAM_LENGTH) {
+        return [];
+    }
+    return Array.from({ length: characters.length - CHARACTER_NGRAM_LENGTH + 1 }, (_value, index) => characters.slice(index, index + CHARACTER_NGRAM_LENGTH).join(""));
+}
 function tokenWeight(token) {
     return token.length >= LONG_TOKEN_MIN_LENGTH ? LONG_TOKEN_WEIGHT : 1;
 }