@jcode.labs/ragmir 2.5.0 → 2.7.0

package/dist/query-sanitizer.js

@@ -0,0 +1,170 @@
+const MAX_RETRIEVAL_QUERY_LENGTH = 250;
+const TAIL_RETRIEVAL_QUERY_LENGTH = 200;
+const MIN_RETRIEVAL_QUERY_LENGTH = 10;
+const QUERY_LABELS = new Set([
+    "question",
+    "query",
+    "search",
+    "recherche",
+    "demande",
+    "user",
+    "utilisateur",
+]);
+export function sanitizeRetrievalQuery(input) {
+    const normalized = compactWhitespace(stripLoneSurrogates(input));
+    if (normalized.length <= MAX_RETRIEVAL_QUERY_LENGTH) {
+        return {
+            query: normalized,
+            changed: normalized !== input,
+            method: "passthrough",
+            originalLength: input.length,
+        };
+    }
+    const question = finalQuestion(normalized);
+    if (question !== null) {
+        return sanitized(input, question, "question");
+    }
+    const labeled = labeledTail(input);
+    if (labeled !== null) {
+        return sanitized(input, labeled, "labeled-tail");
+    }
+    const sentence = finalSentence(normalized);
+    if (sentence !== null) {
+        return sanitized(input, sentence, "tail-sentence");
+    }
+    return sanitized(input, normalized.slice(-TAIL_RETRIEVAL_QUERY_LENGTH), "tail");
+}
+function sanitized(input, query, method) {
+    const cleaned = compactWhitespace(stripLoneSurrogates(query));
+    const bounded = cleaned.slice(0, MAX_RETRIEVAL_QUERY_LENGTH).trim();
+    return {
+        query: bounded,
+        changed: bounded !== input,
+        method,
+        originalLength: input.length,
+    };
+}
+function finalQuestion(text) {
+    for (let end = text.length - 1; end >= 0; end -= 1) {
+        if (text[end] !== "?") {
+            continue;
+        }
+        const start = previousSentenceBoundary(text, end - 1);
+        const value = text.slice(start + 1, end + 1).trim();
+        if (isUsableRetrievalQuery(value)) {
+            return value;
+        }
+    }
+    return null;
+}
+function labeledTail(text) {
+    const lines = text.split("\n");
+    for (let index = lines.length - 1; index >= 0; index -= 1) {
+        const line = lines[index]?.trim();
+        if (!line) {
+            continue;
+        }
+        const separator = line.indexOf(":");
+        if (separator <= 0) {
+            continue;
+        }
+        const label = line.slice(0, separator).trim().toLowerCase();
+        if (!QUERY_LABELS.has(label)) {
+            continue;
+        }
+        const value = line.slice(separator + 1).trim();
+        if (isUsableRetrievalQuery(value)) {
+            return value;
+        }
+    }
+    return null;
+}
+function finalSentence(text) {
+    let end = text.length;
+    while (end > 0) {
+        while (end > 0 && isBoundaryOrWhitespace(text[end - 1] ?? "")) {
+            end -= 1;
+        }
+        if (end <= 0) {
+            break;
+        }
+        const start = previousSentenceBoundary(text, end - 1);
+        const value = text.slice(start + 1, end).trim();
+        if (isUsableRetrievalQuery(value)) {
+            return value;
+        }
+        end = start;
+    }
+    return null;
+}
+function isUsableRetrievalQuery(value) {
+    if (value === undefined) {
+        return false;
+    }
+    return (value.length >= MIN_RETRIEVAL_QUERY_LENGTH &&
+        value.length <= MAX_RETRIEVAL_QUERY_LENGTH &&
+        hasLetterOrNumber(value));
+}
+function stripLoneSurrogates(value) {
+    let output = "";
+    for (let index = 0; index < value.length; index += 1) {
+        const code = value.charCodeAt(index);
+        if (code >= 0xd800 && code <= 0xdbff) {
+            const next = value.charCodeAt(index + 1);
+            if (next >= 0xdc00 && next <= 0xdfff) {
+                output += value[index] ?? "";
+                output += value[index + 1] ?? "";
+                index += 1;
+            }
+            continue;
+        }
+        if (code >= 0xdc00 && code <= 0xdfff) {
+            continue;
+        }
+        output += value[index] ?? "";
+    }
+    return output;
+}
+function compactWhitespace(value) {
+    let output = "";
+    let previousWasWhitespace = false;
+    for (const char of value) {
+        if (char.trim() === "") {
+            if (!previousWasWhitespace) {
+                output += " ";
+            }
+            previousWasWhitespace = true;
+            continue;
+        }
+        output += char;
+        previousWasWhitespace = false;
+    }
+    return output.trim();
+}
+function previousSentenceBoundary(text, fromIndex) {
+    for (let index = fromIndex; index >= 0; index -= 1) {
+        if (isSentenceBoundary(text[index] ?? "")) {
+            return index;
+        }
+    }
+    return -1;
+}
+function isBoundaryOrWhitespace(char) {
+    return isSentenceBoundary(char) || char.trim() === "";
+}
+function isSentenceBoundary(char) {
+    return char === "." || char === "?" || char === "!" || char === "\n" || char === "\r";
+}
+function hasLetterOrNumber(value) {
+    for (const char of value) {
+        const codePoint = char.codePointAt(0);
+        if (codePoint !== undefined && codePoint >= 48 && codePoint <= 57) {
+            return true;
+        }
+        if (char.toLocaleLowerCase() !== char.toLocaleUpperCase()) {
+            return true;
+        }
+    }
+    return false;
+}
+//# sourceMappingURL=query-sanitizer.js.map

package/dist/query-sanitizer.js.map

@@ -0,0 +1 @@
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package/dist/query.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"query.d.ts","sourceRoot":"","sources":["../src/query.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EAAE,SAAS,EAAE,aAAa,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAsCxE,wBAAsB,MAAM,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,GAAE,aAAkB,GAAG,OAAO,CAAC,YAAY,EAAE,CAAC,CA8BhG;AAED,wBAAgB,oBAAoB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAEzD;AAED,wBAAsB,GAAG,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,GAAE,aAAkB,GAAG,OAAO,CAAC,SAAS,CAAC,CAyBxF"}
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package/dist/query.js

@@ -1,8 +1,10 @@
 import { recordAccess } from "./access-log.js";
 import { loadConfig } from "./config.js";
+import { VECTOR_DISTANCE_METRIC } from "./defaults.js";
 import { embedText } from "./embeddings.js";
 import { getIndexFreshnessWarning } from "./index-diagnostics.js";
-import { openRowsTable } from "./store.js";
+import { sanitizeRetrievalQuery } from "./query-sanitizer.js";
+import { openRowsTable, readIndexManifest } from "./store.js";
 import { tokenize } from "./text.js";
 const MIN_VECTOR_CANDIDATES = 80;
 const VECTOR_CANDIDATE_MULTIPLIER = 4;
@@ -24,30 +26,43 @@ const RRF_VECTOR_WEIGHT = 0.7;
 const RRF_LEXICAL_WEIGHT = 0.3;
 const BM25_K1 = 1.2;
 const BM25_B = 0.75;
+const MAX_CONTEXT_RADIUS = 3;
 export async function search(query, options = {}) {
     const config = await loadConfig(String(options.cwd ?? process.cwd()));
     const table = await openRowsTable(config);
     if (!table) {
         return [];
     }
+    const sanitized = sanitizeRetrievalQuery(query);
+    if (!sanitized.query) {
+        return [];
+    }
     const topK = options.topK ?? config.topK;
-    const vector = await embedText(query, config);
+    const vector = await embedText(sanitized.query, config);
+    await assertVectorIndexCompatibility(config, vector.length);
     const vectorRows = (await table
         .vectorSearch(vector)
         .limit(vectorCandidateLimit(topK))
         .toArray());
-    const textRows = (await table.query().limit(config.hybridTextScanLimit).toArray());
-    const rows = rankHybridRows(query, vectorRows, textRows).slice(0, topK);
+    const textRows = await lexicalCandidateRows(table, sanitized.query, config.hybridTextScanLimit);
+    const rows = rankHybridRows(sanitized.query, vectorRows, textRows).slice(0, topK);
+    const contextByRow = await contextChunksByRow(table, rows, options.contextRadius ?? 0);
     const results = rows.map((row) => ({
         source: row.row.source,
         relativePath: row.row.relativePath,
         chunkIndex: row.row.chunkIndex,
+        citation: citationForRow(row.row),
         text: row.row.text,
         distance: typeof row.row._distance === "number" ? row.row._distance : null,
+        charStart: nullableNumber(row.row.charStart),
+        charEnd: nullableNumber(row.row.charEnd),
+        lineStart: nullableNumber(row.row.lineStart),
+        lineEnd: nullableNumber(row.row.lineEnd),
+        context: contextByRow.get(rowKey(row.row)) ?? [],
     }));
     await recordAccess(config, {
         action: "search",
-        query,
+        query: sanitized.query,
         topK,
         resultCount: results.length,
     });
@@ -69,7 +84,7 @@ export async function ask(query, options = {}) {
     }
     await recordAccess(config, {
         action: "ask",
-        query,
+        query: sanitizeRetrievalQuery(query).query,
         topK: options.topK ?? config.topK,
         resultCount: sources.length,
     });
@@ -82,8 +97,8 @@ export async function ask(query, options = {}) {
 function retrievalOnlyAnswer(sources) {
     const snippets = sources
         .map((source, index) => {
-        const text = source.text.replace(/\s+/gu, " ").trim();
-        return `[${index + 1}] ${source.relativePath}#${source.chunkIndex}: ${text}`;
+        const text = answerText(source).replace(/\s+/gu, " ").trim();
+        return `[${index + 1}] ${source.citation}: ${text}`;
     })
         .join("\n\n");
     return [
@@ -92,6 +107,68 @@ function retrievalOnlyAnswer(sources) {
         snippets,
     ].join("\n");
 }
+async function lexicalCandidateRows(table, query, limit) {
+    const ftsQuery = lexicalQuery(query);
+    if (ftsQuery) {
+        try {
+            return (await table.search(ftsQuery, "fts", "text").limit(limit).toArray());
+        }
+        catch {
+            // Older indexes may not have the FTS index yet. Keep retrieval usable and
+            // let doctor/index freshness tell the operator to rebuild.
+        }
+    }
+    return (await table.query().limit(limit).toArray());
+}
+async function contextChunksByRow(table, rows, requestedRadius) {
+    const radius = Math.min(MAX_CONTEXT_RADIUS, Math.max(0, requestedRadius));
+    if (radius === 0 || rows.length === 0) {
+        return new Map();
+    }
+    const contexts = new Map();
+    for (const ranked of rows) {
+        const row = ranked.row;
+        const minChunk = Math.max(0, row.chunkIndex - radius);
+        const maxChunk = row.chunkIndex + radius;
+        const contextRows = (await table
+            .query()
+            .where(`relativePath = ${sqlString(row.relativePath)} AND chunkIndex >= ${minChunk} AND chunkIndex <= ${maxChunk}`)
+            .limit(radius * 2 + 1)
+            .toArray());
+        contexts.set(rowKey(row), contextRows.sort(compareChunkRows).map(contextChunkForRow));
+    }
+    return contexts;
+}
+async function assertVectorIndexCompatibility(config, vectorDimension) {
+    const manifest = await readIndexManifest(config);
+    if (!manifest) {
+        return;
+    }
+    if (manifest.vectorDimension !== undefined && manifest.vectorDimension !== vectorDimension) {
+        throw new Error(`Index vector dimension is ${manifest.vectorDimension} but the active embedding produced ${vectorDimension}. Rebuild with \`rgr ingest --rebuild\`.`);
+    }
+    if (manifest.vectorDistanceMetric !== undefined &&
+        manifest.vectorDistanceMetric !== VECTOR_DISTANCE_METRIC) {
+        throw new Error(`Index vector distance metric is ${manifest.vectorDistanceMetric} but Ragmir expects ${VECTOR_DISTANCE_METRIC}. Rebuild with \`rgr ingest --rebuild\`.`);
+    }
+}
+function answerText(source) {
+    if (source.context.length === 0) {
+        return source.text;
+    }
+    return source.context.map((chunk) => `[${chunk.citation}] ${chunk.text}`).join("\n\n");
+}
+function contextChunkForRow(row) {
+    return {
+        chunkIndex: row.chunkIndex,
+        text: row.text,
+        charStart: nullableNumber(row.charStart),
+        charEnd: nullableNumber(row.charEnd),
+        lineStart: nullableNumber(row.lineStart),
+        lineEnd: nullableNumber(row.lineEnd),
+        citation: citationForRow(row),
+    };
+}
 /**
  * Reciprocal Rank Fusion of vector and lexical retrievers. Rank-only: each
  * candidate scores `1/(RRF_K + rank)` per retriever it appears in, summed.
@@ -208,4 +285,24 @@ function rowDistance(row) {
 function rowKey(row) {
     return `${row.relativePath}\0${row.chunkIndex}`;
 }
+function citationForRow(row) {
+    const lineStart = nullableNumber(row.lineStart);
+    const lineEnd = nullableNumber(row.lineEnd);
+    if (lineStart === null || lineEnd === null) {
+        return `${row.relativePath}#${row.chunkIndex}`;
+    }
+    return `${row.relativePath}:L${lineStart}-L${lineEnd}#${row.chunkIndex}`;
+}
+function lexicalQuery(query) {
+    return [...new Set(tokenize(query))].join(" ");
+}
+function compareChunkRows(a, b) {
+    return a.chunkIndex - b.chunkIndex;
+}
+function nullableNumber(value) {
+    return typeof value === "number" && Number.isFinite(value) ? value : null;
+}
+function sqlString(value) {
+    return `'${value.replaceAll("'", "''")}'`;
+}
 //# sourceMappingURL=query.js.map

package/dist/query.js.map

@@ -1 +1 @@
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package/dist/research.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"research.d.ts","sourceRoot":"","sources":["../src/research.ts"],"names":[],"mappings":"AAWA,OAAO,KAAK,EAEV,mBAAmB,EAEnB,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,YAAY,EACb,MAAM,YAAY,CAAA;AAwDnB,wBAAsB,QAAQ,CAC5B,KAAK,EAAE,MAAM,EACb,OAAO,GAAE,eAAoB,GAC5B,OAAO,CAAC,cAAc,CAAC,CAsEzB;AAED,wBAAgB,oBAAoB,CAClC,OAAO,EAAE,YAAY,EAAE,EACvB,SAAS,SAAyB,GACjC,mBAAmB,EAAE,CAQvB;AAED,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,cAAc,GAAG,IAAI,CAAC,cAAc,EAAE,UAAU,CAAC,GAAG;IAChG,QAAQ,EAAE,KAAK,CAAC,IAAI,CAAC,gBAAgB,EAAE,MAAM,CAAC,GAAG;QAAE,OAAO,EAAE,MAAM,CAAA;KAAE,CAAC,CAAA;CACtE,CAYA"}
+{"version":3,"file":"research.d.ts","sourceRoot":"","sources":["../src/research.ts"],"names":[],"mappings":"AAWA,OAAO,KAAK,EAEV,mBAAmB,EAEnB,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,YAAY,EACb,MAAM,YAAY,CAAA;AAwDnB,wBAAsB,QAAQ,CAC5B,KAAK,EAAE,MAAM,EACb,OAAO,GAAE,eAAoB,GAC5B,OAAO,CAAC,cAAc,CAAC,CAsEzB;AAED,wBAAgB,oBAAoB,CAClC,OAAO,EAAE,YAAY,EAAE,EACvB,SAAS,SAAyB,GACjC,mBAAmB,EAAE,CAWvB;AAED,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,cAAc,GAAG,IAAI,CAAC,cAAc,EAAE,UAAU,CAAC,GAAG;IAChG,QAAQ,EAAE,KAAK,CAAC,IAAI,CAAC,gBAAgB,EAAE,MAAM,CAAC,GAAG;QAAE,OAAO,EAAE,MAAM,CAAA;KAAE,CAAC,CAAA;CACtE,CAeA"}

package/dist/research.js

@@ -132,8 +132,11 @@ export function compactSearchResults(results, maxLength = COMPACT_SNIPPET_LENGTH
         source: result.source,
         relativePath: result.relativePath,
         chunkIndex: result.chunkIndex,
+        citation: result.citation,
         snippet: compactText(result.text, maxLength),
         distance: result.distance,
+        lineStart: result.lineStart,
+        lineEnd: result.lineEnd,
     }));
 }
 export function compactResearchReport(report) {
@@ -143,8 +146,11 @@ export function compactResearchReport(report) {
             source: evidence.source,
             relativePath: evidence.relativePath,
             chunkIndex: evidence.chunkIndex,
+            citation: evidence.citation,
             snippet: compactText(evidence.text),
             distance: evidence.distance,
+            lineStart: evidence.lineStart,
+            lineEnd: evidence.lineEnd,
             queries: evidence.queries,
         })),
     };
@@ -174,8 +180,11 @@ function mergeEvidence(searchResults) {
                 source: result.source,
                 relativePath: result.relativePath,
                 chunkIndex: result.chunkIndex,
+                citation: result.citation,
                 text: result.text,
                 distance: result.distance,
+                lineStart: result.lineStart,
+                lineEnd: result.lineEnd,
                 queries: [searchResult.query],
             });
         }

package/dist/research.js.map

@@ -1 +1 @@
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package/dist/setup.d.ts

@@ -27,6 +27,7 @@ export interface SetupResult {
     ingested: IngestResult | null;
     doctor: DoctorReport;
     nextSteps: string[];
+    configurationPrompt: string;
 }
 export declare function setupProject(options?: SetupOptions): Promise<SetupResult>;
 //# sourceMappingURL=setup.d.ts.map

package/dist/setup.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"setup.d.ts","sourceRoot":"","sources":["../src/setup.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,KAAK,wBAAwB,EAAsB,MAAM,iBAAiB,CAAA;AAGnF,OAAO,EAAE,KAAK,cAAc,EAAc,MAAM,sBAAsB,CAAA;AACtE,OAAO,EAAE,KAAK,8BAA8B,EAA4B,MAAM,sBAAsB,CAAA;AACpG,OAAO,EAAE,KAAK,WAAW,EAAE,KAAK,kBAAkB,EAAgB,MAAM,YAAY,CAAA;AACpF,OAAO,KAAK,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAE5D,MAAM,WAAW,YAAY;IAC3B,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,SAAS,CAAC,EAAE,MAAM,CAAA;IAClB,MAAM,CAAC,EAAE,OAAO,CAAA;IAChB,QAAQ,CAAC,EAAE,OAAO,CAAA;IAClB,MAAM,CAAC,EAAE,SAAS,WAAW,EAAE,CAAA;IAC/B,aAAa,CAAC,EAAE,MAAM,CAAA;IACtB,UAAU,CAAC,EAAE,MAAM,CAAA;IACnB,OAAO,CAAC,EAAE,SAAS,MAAM,EAAE,CAAA;CAC5B;AAED,MAAM,WAAW,mBAAmB;IAClC,KAAK,EAAE,wBAAwB,CAAA;IAC/B,MAAM,EAAE,8BAA8B,CAAA;CACvC;AAED,MAAM,WAAW,WAAW;IAC1B,WAAW,EAAE,MAAM,CAAA;IACnB,cAAc,EAAE,cAAc,CAAA;IAC9B,UAAU,EAAE,MAAM,CAAA;IAClB,OAAO,EAAE,MAAM,EAAE,CAAA;IACjB,QAAQ,EAAE,kBAAkB,CAAA;IAC5B,QAAQ,EAAE,mBAAmB,GAAG,IAAI,CAAA;IACpC,QAAQ,EAAE,YAAY,GAAG,IAAI,CAAA;IAC7B,MAAM,EAAE,YAAY,CAAA;IACpB,SAAS,EAAE,MAAM,EAAE,CAAA;CACpB;AAED,wBAAsB,YAAY,CAAC,OAAO,GAAE,YAAiB,GAAG,OAAO,CAAC,WAAW,CAAC,CA0CnF"}
+{"version":3,"file":"setup.d.ts","sourceRoot":"","sources":["../src/setup.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,KAAK,wBAAwB,EAAsB,MAAM,iBAAiB,CAAA;AAGnF,OAAO,EAAE,KAAK,cAAc,EAAc,MAAM,sBAAsB,CAAA;AACtE,OAAO,EAAE,KAAK,8BAA8B,EAA4B,MAAM,sBAAsB,CAAA;AACpG,OAAO,EAAE,KAAK,WAAW,EAAE,KAAK,kBAAkB,EAAgB,MAAM,YAAY,CAAA;AACpF,OAAO,KAAK,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAE5D,MAAM,WAAW,YAAY;IAC3B,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,SAAS,CAAC,EAAE,MAAM,CAAA;IAClB,MAAM,CAAC,EAAE,OAAO,CAAA;IAChB,QAAQ,CAAC,EAAE,OAAO,CAAA;IAClB,MAAM,CAAC,EAAE,SAAS,WAAW,EAAE,CAAA;IAC/B,aAAa,CAAC,EAAE,MAAM,CAAA;IACtB,UAAU,CAAC,EAAE,MAAM,CAAA;IACnB,OAAO,CAAC,EAAE,SAAS,MAAM,EAAE,CAAA;CAC5B;AAED,MAAM,WAAW,mBAAmB;IAClC,KAAK,EAAE,wBAAwB,CAAA;IAC/B,MAAM,EAAE,8BAA8B,CAAA;CACvC;AAED,MAAM,WAAW,WAAW;IAC1B,WAAW,EAAE,MAAM,CAAA;IACnB,cAAc,EAAE,cAAc,CAAA;IAC9B,UAAU,EAAE,MAAM,CAAA;IAClB,OAAO,EAAE,MAAM,EAAE,CAAA;IACjB,QAAQ,EAAE,kBAAkB,CAAA;IAC5B,QAAQ,EAAE,mBAAmB,GAAG,IAAI,CAAA;IACpC,QAAQ,EAAE,YAAY,GAAG,IAAI,CAAA;IAC7B,MAAM,EAAE,YAAY,CAAA;IACpB,SAAS,EAAE,MAAM,EAAE,CAAA;IACnB,mBAAmB,EAAE,MAAM,CAAA;CAC5B;AAiBD,wBAAsB,YAAY,CAAC,OAAO,GAAE,YAAiB,GAAG,OAAO,CAAC,WAAW,CAAC,CA2CnF"}

package/dist/setup.js

@@ -7,6 +7,20 @@ import { initProject } from "./init.js";
 import { rgrCommand } from "./package-manager.js";
 import { enableSemanticEmbeddings } from "./semantic-config.js";
 import { installSkill } from "./skill.js";
+const CONFIGURATION_PROMPT = `You are helping configure Ragmir for this repository.
+
+Work from the repository root where \`rgr setup\` was run. Your goal is to improve \`.ragmir/config.json\` so Ragmir indexes useful repository knowledge without indexing secrets, generated files, or noisy bulk data.
+
+Tasks:
+1. Inspect the repository structure and the current \`.ragmir/config.json\`.
+2. Add concise \`sources\` entries for durable knowledge: root README files, AGENTS/CLAUDE/CODEX guidance, CONTRIBUTING/CHANGELOG files, docs, specs, architecture notes, package README files, app/package metadata, and important project configuration.
+3. Include translation or locale files only when they help explain product behavior. Prefer English first; if the project primarily uses another language, include that language too. Do not add every locale by default.
+4. Exclude generated output, dependency folders, build caches, coverage, logs, vendored code, binaries, screenshots/media dumps, \`.env*\`, credentials, private keys, raw customer data, and \`.ragmir/storage\` or \`.ragmir/models\`.
+5. Prefer stable globs over long file lists, but keep the set narrow enough that \`rgr audit\` remains readable.
+6. If you can edit files, update the \`sources\` array in \`.ragmir/config.json\`. If you are read-only, return exact \`rgr sources add ...\` commands instead.
+7. If you can execute commands, run \`rgr audit --unsupported\` and \`rgr doctor --fix\`, then report what you added, what you deliberately excluded, and any skipped files Ragmir reported.
+
+Keep all proposed paths relative to the repository root. Do not add secrets or private documents to Git.`;
 export async function setupProject(options = {}) {
     const cwd = path.resolve(options.cwd ?? process.cwd());
     const created = await initProject(cwd);
@@ -45,6 +59,7 @@ export async function setupProject(options = {}) {
         ingested,
         doctor: report,
         nextSteps: setupNextSteps(report),
+        configurationPrompt: CONFIGURATION_PROMPT,
     };
 }
 async function setupSemanticEmbeddings(cwd) {

package/dist/setup.js.map

@@ -1 +1 @@
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+{"version":3,"file":"setup.js","sourceRoot":"","sources":["../src/setup.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAA;AAC5B,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACxC,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AACpC,OAAO,EAAiC,kBAAkB,EAAE,MAAM,iBAAiB,CAAA;AACnF,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AACpC,OAAO,EAAE,WAAW,EAAE,MAAM,WAAW,CAAA;AACvC,OAAO,EAAuB,UAAU,EAAE,MAAM,sBAAsB,CAAA;AACtE,OAAO,EAAuC,wBAAwB,EAAE,MAAM,sBAAsB,CAAA;AACpG,OAAO,EAA6C,YAAY,EAAE,MAAM,YAAY,CAAA;AAgCpF,MAAM,oBAAoB,GAAG;;;;;;;;;;;;;yGAa4E,CAAA;AAEzG,MAAM,CAAC,KAAK,UAAU,YAAY,CAAC,UAAwB,EAAE;IAC3D,MAAM,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC,CAAA;IACtD,MAAM,OAAO,GAAG,MAAM,WAAW,CAAC,GAAG,CAAC,CAAA;IACtC,MAAM,cAAc,GAAuC,EAAE,GAAG,EAAE,CAAA;IAClE,IAAI,OAAO,CAAC,SAAS,KAAK,SAAS,EAAE,CAAC;QACpC,cAAc,CAAC,SAAS,GAAG,OAAO,CAAC,SAAS,CAAA;IAC9C,CAAC;IACD,IAAI,OAAO,CAAC,MAAM,KAAK,SAAS,EAAE,CAAC;QACjC,cAAc,CAAC,MAAM,GAAG,OAAO,CAAC,MAAM,CAAA;IACxC,CAAC;IACD,IAAI,OAAO,CAAC,aAAa,KAAK,SAAS,EAAE,CAAC;QACxC,cAAc,CAAC,aAAa,GAAG,OAAO,CAAC,aAAa,CAAA;IACtD,CAAC;IACD,IAAI,OAAO,CAAC,UAAU,KAAK,SAAS,EAAE,CAAC;QACrC,cAAc,CAAC,UAAU,GAAG,OAAO,CAAC,UAAU,CAAA;IAChD,CAAC;IACD,IAAI,OAAO,CAAC,OAAO,KAAK,SAAS,EAAE,CAAC;QAClC,cAAc,CAAC,OAAO,GAAG,OAAO,CAAC,OAAO,CAAA;IAC1C,CAAC;IACD,MAAM,QAAQ,GAAG,MAAM,YAAY,CAAC,cAAc,CAAC,CAAA;IACnD,MAAM,QAAQ,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC,CAAC,MAAM,uBAAuB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAA;IAC7E,IAAI,MAAM,GAAG,MAAM,MAAM,CAAC,GAAG,CAAC,CAAA;IAC9B,IAAI,QAAQ,GAAwB,IAAI,CAAA;IAExC,IAAI,OAAO,CAAC,MAAM,KAAK,KAAK,IAAI,aAAa,CAAC,MAAM,CAAC,EAAE,CAAC;QACtD,QAAQ,GAAG,MAAM,MAAM,CAAC,EAAE,GAAG,EAAE,CAAC,CAAA;QAChC,MAAM,GAAG,MAAM,MAAM,CAAC,GAAG,CAAC,CAAA;IAC5B,CAAC;IAED,MAAM,OAAO,GAAG,MAAM,UAAU,CAAC,GAAG,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAA;IAEjD,OAAO;QACL,WAAW,EAAE,MAAM,CAAC,WAAW;QAC/B,cAAc,EAAE,OAAO,CAAC,cAAc;QACtC,UAAU,EAAE,OAAO,CAAC,OAAO;QAC3B,OAAO;QACP,QAAQ;QACR,QAAQ;QACR,QAAQ;QACR,MAAM,EAAE,MAAM;QACd,SAAS,EAAE,cAAc,CAAC,MAAM,CAAC;QACjC,mBAAmB,EAAE,oBAAoB;KAC1C,CAAA;AACH,CAAC;AAED,KAAK,UAAU,uBAAuB,CAAC,GAAW;IAChD,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,GAAG,CAAC,CAAA;IACpC,MAAM,KAAK,GAAG,MAAM,kBAAkB,CAAC,MAAM,CAAC,CAAA;IAC9C,MAAM,cAAc,GAAG,MAAM,wBAAwB,CAAC,GAAG,CAAC,CAAA;IAC1D,OAAO;QACL,KAAK;QACL,MAAM,EAAE,cAAc;KACvB,CAAA;AACH,CAAC;AAED,SAAS,aAAa,CAAC,MAAoB;IACzC,OAAO,CACL,MAAM,CAAC,cAAc,GAAG,CAAC;QACzB,MAAM,CAAC,gBAAgB,CAAC,MAAM,KAAK,CAAC;QACpC,CAAC,MAAM,CAAC,aAAa,KAAK,CAAC,IAAI,MAAM,CAAC,gBAAgB,GAAG,CAAC,IAAI,MAAM,CAAC,YAAY,GAAG,CAAC,CAAC,CACvF,CAAA;AACH,CAAC;AAED,SAAS,cAAc,CAAC,MAAoB;IAC1C,IAAI,MAAM,CAAC,KAAK,EAAE,CAAC;QACjB,OAAO;YACL,qEAAqE;YACrE,oGAAoG;YACpG,8FAA8F;SAC/F,CAAA;IACH,CAAC;IACD,OAAO,MAAM,CAAC,SAAS,CAAA;AACzB,CAAC"}

package/dist/store.d.ts

@@ -6,6 +6,7 @@ export interface EmptyTextFileRecord {
 }
 export interface IndexWriteResult {
     vectorIndexWarning: string | null;
+    lexicalIndexWarning: string | null;
 }
 export declare function writeRows(rows: VectorRow[], config: Config): Promise<IndexWriteResult>;
 export declare function writeIndexManifest(manifest: IndexManifest, config: Config): Promise<void>;

package/dist/store.d.ts.map

@@ -1 +1 @@
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