@jcode.labs/ragmir 2.17.0 → 2.17.1

package/README.md

@@ -5,38 +5,19 @@
 [![Node.js](https://img.shields.io/node/v/@jcode.labs/ragmir)](https://www.npmjs.com/package/@jcode.labs/ragmir)
 [![MIT](https://img.shields.io/npm/l/@jcode.labs/ragmir)](https://github.com/jcode-works/jcode-ragmir/blob/main/LICENSE)
 
-**Confidential local RAG for your coding agents.**
+Confidential local RAG for coding agents and Node.js applications.
 
-`@jcode.labs/ragmir` indexes the project files you select on your machine and retrieves bounded,
-cited evidence offline by default. The corpus and generated index remain local, so confidential
-source files are not uploaded to a hosted RAG service. Your coding agent or local script gets the
-context it needs without an account, API key, or model download.
+*Stop sending confidential documents directly to the cloud.*
 
-Core is model-agnostic. Connect the coding agent or local script you already use through generated
-project skills, local MCP, or the JSON CLI. Use the typed Node.js API when your application owns the
-control flow.
+Core indexes the project files you select and retrieves bounded, cited evidence offline by default.
+It does not upload the corpus, call an LLM, or open an HTTP port.
 
 [Project overview](https://github.com/jcode-works/jcode-ragmir#readme) ·
-[Documentation](https://github.com/jcode-works/jcode-ragmir/wiki) ·
 [CLI reference](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/cli-reference.md) ·
-[API reference](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/api-reference.md)
+[API reference](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/api-reference.md) ·
+[Agent integration](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/agent-integration.md)
 
-## What your coding agent gains
-
-| Goal | Core interface |
-| --- | --- |
-| Search repository documents with citations | `rgr search` |
-| Audit a local knowledge base | `rgr audit`, `rgr doctor`, and `rgr security-audit` |
-| Add retrieval to a Node.js application | Typed `ingest`, `search`, `ask`, and `research` exports |
-| Give an agent bounded project context | Local stdio MCP server and generated helpers |
-| Index scanned PDFs | Embedded text first, with optional page-aware local OCR |
-
-Core retrieves cited evidence. It does not require a generative model or generate answers. Use
-[Ragmir Chat](https://www.npmjs.com/package/@jcode.labs/ragmir-chat) only when local GGUF synthesis
-is useful, or [Ragmir TTS](https://www.npmjs.com/package/@jcode.labs/ragmir-tts) when you need audio
-output. Core declares both as optional peer integrations and does not install either add-on.
-
-## Connect a coding agent in minutes
+## Install and retrieve
 
 Requires Node.js 20 or later.
 
@@ -45,76 +26,24 @@ npm install --save-dev @jcode.labs/ragmir
 npx rgr setup --agents codex,claude,kimi,opencode,cline
 npx rgr sources add "README.md" "docs/**/*.md"
 npx rgr ingest
-npx rgr doctor
-```
-
-Then ask the selected agent:
-
-```text
-Use Ragmir to find the rollout decision. Cite every claim and expand the strongest citation before
-you recommend a change.
-```
-
-Setup installs project-scoped native skills and writes a local stdio MCP helper for each selected
-client. The generated runner pins the current project, so an agent in a monorepo does not silently
-query a sibling index. No Ragmir-specific model is required.
-
-The same setup works with any compatible MCP client. Hermes can launch `.ragmir/run.cjs`; local
-scripts, CI, and internal tools can call the JSON CLI or the TypeScript API without a dedicated
-connector.
-
-## Use the same evidence from an automation
-
-```bash
-npx rgr search "Should this renewal require approval?" --compact --json
-```
-
-Use that command from a local shell script, a Node.js worker, or a CI step after mounting the project
-and its local `.ragmir/` state. The process returns machine-readable cited passages; the workflow
-decides whether to continue, request human approval, or stop.
-
-For long-running agent integrations, start the local stdio server with `npx rgr serve-mcp`. For a
-Node.js worker that owns the control flow, use `createRagmirClient()` and reuse one client per project
-root. Ragmir does not open an HTTP port or define an authentication layer.
-
-## Search directly from the CLI
-
-```bash
 npx rgr search "Which decision changed the rollout?"
 ```
 
-The project owns an ignored `.ragmir/` directory containing configuration and generated local
-state. Ingestion is incremental and commits 25 files per resumable batch by default. Re-run the
-same command after an interruption, or inspect `npx rgr status --json` for the current run ID,
-counts, last activity, and resume flag. Every result identifies the source path, chunk, line range,
-and PDF page when one is available.
+Setup keeps configuration, the index, helpers, reports, and metadata-only access logs under ignored
+`.ragmir/` state. Ingestion is incremental and resumable. Run `npx rgr audit --unsupported` to
+compare the selected files with the index and see what was skipped.
 
-## CLI essentials
+## Choose an interface
 
-```bash
-# Readiness and source coverage
-npx rgr doctor
-npx rgr audit --unsupported
-npx rgr security-audit
-
-# Retrieval
-npx rgr preview --path docs --max-chunks 3
-npx rgr search "deployment decision"
-npx rgr search "deployment decision" --explain
-npx rgr search "deployment decision" --context-path "Operations > Deployment"
-npx rgr ask "What evidence supports the deployment decision?"
-npx rgr research "deployment obligations" --compact
-
-# Machine-readable output
-npx rgr search "deployment decision" --json
-```
-
-Use `npx rgr ingest --batch-size 10` when a smaller durable checkpoint is useful. Full rebuilds use
-an isolated local generation and switch the active manifest only after validation, so a failed or
-interrupted rebuild does not replace the last healthy index.
+| Interface | Use |
+| --- | --- |
+| `rgr` CLI | Setup, ingest, search, audit, and JSON automation |
+| TypeScript API | Typed retrieval in a script or stateful Node.js worker |
+| Local stdio MCP | Bounded context for compatible coding agents |
 
-`ask` returns cited retrieval context, not LLM synthesis. `research` performs an audit-backed,
-multi-query retrieval pass and reports missing or weak evidence.
+The default `local-hash` provider needs no model download. It is lexical/hash retrieval, not
+semantic embeddings. Enable local Transformers.js embeddings explicitly with `rgr setup --semantic`
+and rebuild the index.
 
 ## TypeScript API
 
@@ -124,7 +53,6 @@ import { createRagmirClient } from "@jcode.labs/ragmir"
 const ragmir = await createRagmirClient({ cwd: process.cwd() })
 try {
   await ragmir.ingest({ timeoutMs: 120_000 })
-
   const results = await ragmir.search("Which decision changed the rollout?", {
     topK: 5,
     timeoutMs: 10_000,
@@ -138,98 +66,29 @@ try {
 }
 ```
 
-The persistent client reuses one local database connection, supports cooperative cancellation, and
-waits for active work before shutdown. The top-level functions remain the smallest API for one-shot
-scripts.
-
-Frequently used exports:
-
-| Export | Purpose |
-| --- | --- |
-| `setupProject`, `addSourceEntries` | Initialize project state and select files |
-| `discoverKnowledgeBases`, `knowledgeBaseIdentity` | Route root and nested monorepo bases |
-| `getKnowledgeBaseContext`, `getKnowledgeBaseSourceCatalog` | Give agents bounded readiness and source context |
-| `createRagmirClient`, `RagmirClient` | Reuse local retrieval safely in a stateful Node.js process |
-| `ingest`, `audit` | Build the index and compare it with files on disk |
-| `previewChunks` | Inspect redacted chunks and distributions without writing storage |
-| `search`, `ask`, `research`, `expandCitation` | Retrieve or expand cited passages |
-| `doctor`, `securityAudit` | Inspect readiness and local privacy posture |
-| `createMcpServer`, `connectMcpServer`, `serveMcp` | Construct, connect, or start the read-focused local MCP server |
-| `configurePdfOcr`, `inspectPdfOcr` | Configure and inspect local PDF OCR |
-
-See the [complete API reference](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/api-reference.md)
-for options and result shapes.
-
-Any compatible CLI, TypeScript, or MCP client can consume the same cited results. A hosted AI
-receives returned passages under its provider's data policy. OpenCode or another local consumer can
-keep the handoff on the workstation. Optional Ragmir Chat adds local answer generation, but Qwen,
-Gemma, and every other generative model remain outside Core.
-
-For a monorepo with root and app-specific bases, run `rgr bases --json` before retrieval when scope
-is unclear. The nearest configured base is active, nested MCP helpers get unique names, and every
-helper pins `RAGMIR_PROJECT_ROOT` so clients cannot drift to a sibling index.
-
-## Retrieval modes
-
-| Mode | Network requirement | Best for |
-| --- | --- | --- |
-| `local-hash` | None | Default offline retrieval, setup-free projects, and deterministic evaluation |
-| `transformers` | Explicit model preload or download | Higher-quality semantic matching with local inference |
-
-Enable semantic retrieval explicitly:
-
-```bash
-npx rgr setup --semantic
-npx rgr ingest --rebuild
-```
+Reuse one client per project root in long-running processes and close it during shutdown. Top-level
+`ingest`, `search`, `ask`, and `research` functions remain available for one-shot scripts. `ask`
+returns cited retrieval context, not a generated answer.
 
-`local-hash` is lexical/hash retrieval. It should not be presented as equivalent to semantic
-embeddings.
+Core also exports setup, preview, audit, evaluation, source-routing, privacy, OCR, MCP, and agent
+integration helpers. See the [complete API reference](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/api-reference.md)
+for public options and result types.
 
-## Documents and OCR
+## Optional packages and boundaries
 
-Core parses common source, text, structured-data, Office, OpenDocument, EPUB, HTML, email, notebook,
-and PDF formats. Projects can add custom text extensions. Run `rgr audit --unsupported` to see every
-skipped file and recommendation.
+- [`@jcode.labs/ragmir-chat`](https://www.npmjs.com/package/@jcode.labs/ragmir-chat) adds local GGUF
+  answer generation from retrieved passages.
+- [`@jcode.labs/ragmir-tts`](https://www.npmjs.com/package/@jcode.labs/ragmir-tts) renders reviewed
+  text as local audio or explicit online speech.
 
-For scanned PDFs:
+Core installs and starts without either add-on. A hosted agent receives only the passages your
+integration gives it, under that provider's data policy. Use a local consumer when no passage may
+leave the workstation. Ragmir has no hosted storage or cloud-sync layer; teams synchronize source
+files separately and build one local index per developer.
 
-```bash
-npx rgr ocr setup --engine auto
-npx rgr ingest --rebuild
-```
-
-Ragmir prefers embedded PDF text and invokes OCR only for blank pages. OCR runs through a configured
-local executable, never a shell string or cloud OCR service.
-
-## Local data and privacy
-
-- Project paths resolve from `cwd` or explicit configuration, not the npm installation directory.
-- Generated indexes, models, reports, audio, and access logs belong under ignored `.ragmir/` state.
-- Redaction runs before indexing when configured, but it is not a compliance certification.
-- External extractors and model downloads are opt-in system boundaries.
-- MCP retrieval is bounded by `mcpMaxOutputBytes`; access logs contain byte metrics, not query text
-  or retrieved passages.
-
-Read [configuration and privacy](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/configuration.md)
-and [security hardening](https://github.com/jcode-works/jcode-ragmir/blob/main/SECURITY-HARDENING.md)
+Read the [configuration guide](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/configuration.md),
+[security hardening guide](https://github.com/jcode-works/jcode-ragmir/blob/main/SECURITY-HARDENING.md),
+and [troubleshooting guide](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/troubleshooting.md)
 before indexing sensitive material.
 
-## Runnable examples
-
-| Example | Demonstrates |
-| --- | --- |
-| [Confidential local RAG demo](https://github.com/jcode-works/jcode-ragmir/tree/main/packages/ragmir-core/examples/sovereign-rag-demo) | CLI ingestion, search, audit, redaction, and evaluation |
-| [Library API demo](https://github.com/jcode-works/jcode-ragmir/tree/main/packages/ragmir-core/examples/library-api-demo) | The public library surface against fictional files |
-| [Document evidence benchmark](https://github.com/jcode-works/jcode-ragmir/tree/main/packages/ragmir-core/examples/document-evidence-benchmark) | Recall and exact citation evaluation |
-
-## Documentation
-
-- [Project documentation](https://github.com/jcode-works/jcode-ragmir/wiki)
-- [CLI reference](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/cli-reference.md)
-- [TypeScript API reference](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/api-reference.md)
-- [Configuration](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/configuration.md)
-- [Agent integration](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/agent-integration.md)
-- [Troubleshooting](https://github.com/jcode-works/jcode-ragmir/blob/main/docs/troubleshooting.md)
-
 Ragmir Core is open source under the [MIT License](https://github.com/jcode-works/jcode-ragmir/blob/main/LICENSE).

package/dist/access-log.d.ts

@@ -13,6 +13,7 @@ export interface McpOutputLogEvent {
     compacted: boolean;
     truncated: boolean;
 }
+export declare const MAX_USAGE_REPORT_DAYS = 3650;
 export declare function recordAccess(config: Config, event: AccessLogEvent): Promise<void>;
 export declare function recordMcpOutput(config: Config, event: McpOutputLogEvent): Promise<void>;
 export declare function accessLogUsageReport(options?: AccessLogUsageOptions): Promise<AccessLogUsageReport>;

package/dist/access-log.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"access-log.d.ts","sourceRoot":"","sources":["../src/access-log.ts"],"names":[],"mappings":"AAMA,OAAO,KAAK,EACV,eAAe,EACf,qBAAqB,EACrB,oBAAoB,EACpB,MAAM,EACN,aAAa,EACd,MAAM,YAAY,CAAA;AAEnB,MAAM,WAAW,cAAc;IAC7B,MAAM,EAAE,eAAe,CAAA;IACvB,KAAK,CAAC,EAAE,MAAM,CAAA;IACd,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,WAAW,CAAC,EAAE,MAAM,CAAA;IACpB,UAAU,CAAC,EAAE,MAAM,CAAA;CACpB;AAED,MAAM,WAAW,iBAAiB;IAChC,IAAI,EAAE,aAAa,CAAA;IACnB,cAAc,EAAE,MAAM,CAAA;IACtB,aAAa,EAAE,MAAM,CAAA;IACrB,SAAS,EAAE,OAAO,CAAA;IAClB,SAAS,EAAE,OAAO,CAAA;CACnB;AAsDD,wBAAsB,YAAY,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,cAAc,GAAG,OAAO,CAAC,IAAI,CAAC,CAgBvF;AAED,wBAAsB,eAAe,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,iBAAiB,GAAG,OAAO,CAAC,IAAI,CAAC,CAyB7F;AA2BD,wBAAsB,oBAAoB,CACxC,OAAO,GAAE,qBAA0B,GAClC,OAAO,CAAC,oBAAoB,CAAC,CAoF/B"}
+{"version":3,"file":"access-log.d.ts","sourceRoot":"","sources":["../src/access-log.ts"],"names":[],"mappings":"AAOA,OAAO,KAAK,EACV,eAAe,EACf,qBAAqB,EACrB,oBAAoB,EACpB,MAAM,EACN,aAAa,EACd,MAAM,YAAY,CAAA;AAEnB,MAAM,WAAW,cAAc;IAC7B,MAAM,EAAE,eAAe,CAAA;IACvB,KAAK,CAAC,EAAE,MAAM,CAAA;IACd,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,WAAW,CAAC,EAAE,MAAM,CAAA;IACpB,UAAU,CAAC,EAAE,MAAM,CAAA;CACpB;AAED,MAAM,WAAW,iBAAiB;IAChC,IAAI,EAAE,aAAa,CAAA;IACnB,cAAc,EAAE,MAAM,CAAA;IACtB,aAAa,EAAE,MAAM,CAAA;IACrB,SAAS,EAAE,OAAO,CAAA;IAClB,SAAS,EAAE,OAAO,CAAA;CACnB;AA2CD,eAAO,MAAM,qBAAqB,OAAQ,CAAA;AAa1C,wBAAsB,YAAY,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,cAAc,GAAG,OAAO,CAAC,IAAI,CAAC,CAsBvF;AAED,wBAAsB,eAAe,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,iBAAiB,GAAG,OAAO,CAAC,IAAI,CAAC,CA2B7F;AA8CD,wBAAsB,oBAAoB,CACxC,OAAO,GAAE,qBAA0B,GAClC,OAAO,CAAC,oBAAoB,CAAC,CAiG/B"}

package/dist/access-log.js

@@ -3,6 +3,7 @@ import { existsSync } from "node:fs";
 import { appendFile, readFile, stat, writeFile } from "node:fs/promises";
 import path from "node:path";
 import { loadConfig } from "./config.js";
+import { operationSignal, throwIfAborted } from "./operation.js";
 import { ensurePrivateDirectory, hardenPrivateFile } from "./permissions.js";
 const ACCESS_LOG_ACTIONS = [
     "ingest",
@@ -21,6 +22,7 @@ const MCP_OUTPUT_TOOLS = [
 ];
 const MCP_OUTPUT_TOOL_SET = new Set(MCP_OUTPUT_TOOLS);
 const DEFAULT_USAGE_REPORT_DAYS = 7;
+export const MAX_USAGE_REPORT_DAYS = 3_650;
 const MILLISECONDS_PER_DAY = 24 * 60 * 60 * 1000;
 /**
  * Soft cap above which the access log is trimmed to its most recent lines.
@@ -31,18 +33,21 @@ const MAX_ACCESS_LOG_BYTES = 10 * 1024 * 1024;
 /** Number of most recent lines retained when the log exceeds the byte cap. */
 const TRIMMED_ACCESS_LOG_LINES = 50_000;
 const ACCESS_LOG_SALT_FILE = ".ragmir-access-log.salt";
+const accessLogWriteQueues = new Map();
 export async function recordAccess(config, event) {
     if (!config.accessLog) {
         return;
     }
     try {
-        await ensurePrivateDirectory(path.dirname(config.accessLogPath));
-        await trimAccessLogIfNeeded(config.accessLogPath);
-        await appendFile(config.accessLogPath, `${JSON.stringify(await toLogLine(config, event))}\n`, {
-            encoding: "utf8",
-            mode: 0o600,
+        await withAccessLogWriteQueue(config.accessLogPath, async () => {
+            await ensurePrivateDirectory(path.dirname(config.accessLogPath));
+            await trimAccessLogIfNeeded(config.accessLogPath);
+            await appendFile(config.accessLogPath, `${JSON.stringify(await toLogLine(config, event))}\n`, {
+                encoding: "utf8",
+                mode: 0o600,
+            });
+            await hardenPrivateFile(config.accessLogPath);
         });
-        await hardenPrivateFile(config.accessLogPath);
     }
     catch {
         // Access logging is best-effort so read-only workspaces do not block local use.
@@ -53,27 +58,41 @@ export async function recordMcpOutput(config, event) {
         return;
     }
     try {
-        await ensurePrivateDirectory(path.dirname(config.accessLogPath));
-        await trimAccessLogIfNeeded(config.accessLogPath);
-        const line = {
-            timestamp: new Date().toISOString(),
-            kind: "mcp-output",
-            tool: event.tool,
-            retrievedBytes: event.retrievedBytes,
-            returnedBytes: event.returnedBytes,
-            compacted: event.compacted,
-            truncated: event.truncated,
-        };
-        await appendFile(config.accessLogPath, `${JSON.stringify(line)}\n`, {
-            encoding: "utf8",
-            mode: 0o600,
+        await withAccessLogWriteQueue(config.accessLogPath, async () => {
+            await ensurePrivateDirectory(path.dirname(config.accessLogPath));
+            await trimAccessLogIfNeeded(config.accessLogPath);
+            const line = {
+                timestamp: new Date().toISOString(),
+                kind: "mcp-output",
+                tool: event.tool,
+                retrievedBytes: event.retrievedBytes,
+                returnedBytes: event.returnedBytes,
+                compacted: event.compacted,
+                truncated: event.truncated,
+            };
+            await appendFile(config.accessLogPath, `${JSON.stringify(line)}\n`, {
+                encoding: "utf8",
+                mode: 0o600,
+            });
+            await hardenPrivateFile(config.accessLogPath);
         });
-        await hardenPrivateFile(config.accessLogPath);
     }
     catch {
         // Output metrics are best-effort and must never block local retrieval.
     }
 }
+function withAccessLogWriteQueue(accessLogPath, operation) {
+    const previous = accessLogWriteQueues.get(accessLogPath) ?? Promise.resolve();
+    const current = previous.then(operation);
+    const settled = current.then(() => undefined, () => undefined);
+    accessLogWriteQueues.set(accessLogPath, settled);
+    void settled.then(() => {
+        if (accessLogWriteQueues.get(accessLogPath) === settled) {
+            accessLogWriteQueues.delete(accessLogPath);
+        }
+    });
+    return current;
+}
 async function trimAccessLogIfNeeded(accessLogPath) {
     let size = 0;
     try {
@@ -97,7 +116,10 @@ function isNodeError(error) {
     return error instanceof Error && "code" in error;
 }
 export async function accessLogUsageReport(options = {}) {
+    const signal = operationSignal(options);
+    throwIfAborted(signal);
     const config = await loadConfig(String(options.cwd ?? process.cwd()));
+    throwIfAborted(signal);
     const days = normalizeUsageReportDays(options.days);
     const until = new Date();
     const since = new Date(until.getTime() - days * MILLISECONDS_PER_DAY);
@@ -115,8 +137,18 @@ export async function accessLogUsageReport(options = {}) {
     let truncatedResponses = 0;
     let lastEventAt = null;
     if (existsSync(config.accessLogPath)) {
-        const lines = (await readFile(config.accessLogPath, "utf8")).split(/\r?\n/u).filter(Boolean);
+        let content;
+        try {
+            content = await readFile(config.accessLogPath, { encoding: "utf8", signal });
+        }
+        catch (error) {
+            throwIfAborted(signal);
+            throw error;
+        }
+        throwIfAborted(signal);
+        const lines = content.split(/\r?\n/u).filter(Boolean);
         for (const line of lines) {
+            throwIfAborted(signal);
             const event = parseAccessLogLine(line);
             if (!event) {
                 invalidLines += 1;
@@ -155,6 +187,7 @@ export async function accessLogUsageReport(options = {}) {
             }
         }
     }
+    throwIfAborted(signal);
     return {
         accessLogEnabled: config.accessLog,
         since: since.toISOString(),
@@ -251,8 +284,8 @@ function normalizeUsageReportDays(days) {
     if (days === undefined) {
         return DEFAULT_USAGE_REPORT_DAYS;
     }
-    if (!Number.isInteger(days) || days <= 0) {
-        throw new Error("usage-report days must be a positive integer.");
+    if (!Number.isSafeInteger(days) || days <= 0 || days > MAX_USAGE_REPORT_DAYS) {
+        throw new Error(`usage-report days must be an integer between 1 and ${MAX_USAGE_REPORT_DAYS}.`);
     }
     return days;
 }

package/dist/access-log.js.map

@@ -1 +1 @@
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package/dist/client.d.ts

@@ -1,5 +1,5 @@
 import type { PathLike } from "node:fs";
-import type { AskResult, ExpandCitationOptions, ExpandedCitation, IngestOptions, IngestResult, KnowledgeBaseContextReport, KnowledgeBaseSourceCatalog, ResearchOptions, ResearchReport, SearchOptions, SearchResult } from "./types.js";
+import type { AskResult, ExpandCitationOptions, ExpandedCitation, IngestOptions, IngestResult, KnowledgeBaseContextReport, KnowledgeBaseSourceCatalog, OperationOptions, ResearchOptions, ResearchReport, SearchOptions, SearchResult } from "./types.js";
 export interface RagmirClientOptions {
     cwd?: PathLike;
 }
@@ -18,8 +18,8 @@ export declare class RagmirClient {
     ask(query: string, options?: Omit<SearchOptions, "cwd">): Promise<AskResult>;
     research(query: string, options?: Omit<ResearchOptions, "cwd">): Promise<ResearchReport>;
     expandCitation(citation: string, options?: Omit<ExpandCitationOptions, "cwd">): Promise<ExpandedCitation>;
-    status(): Promise<KnowledgeBaseContextReport>;
-    sources(): Promise<KnowledgeBaseSourceCatalog>;
+    status(options?: OperationOptions): Promise<KnowledgeBaseContextReport>;
+    sources(options?: OperationOptions): Promise<KnowledgeBaseSourceCatalog>;
     close(): Promise<void>;
     private assertOpen;
     private run;

package/dist/client.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"client.d.ts","sourceRoot":"","sources":["../src/client.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAA;AASvC,OAAO,KAAK,EACV,SAAS,EAET,qBAAqB,EACrB,gBAAgB,EAChB,aAAa,EACb,YAAY,EACZ,0BAA0B,EAC1B,0BAA0B,EAC1B,eAAe,EACf,cAAc,EACd,aAAa,EACb,YAAY,EACb,MAAM,YAAY,CAAA;AAEnB,MAAM,WAAW,mBAAmB;IAClC,GAAG,CAAC,EAAE,QAAQ,CAAA;CACf;AAED,qBAAa,YAAY;IACvB,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAA;IAC5B,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAQ;IAC/B,OAAO,CAAC,QAAQ,CAAC,UAAU,CAAY;IACvC,OAAO,CAAC,QAAQ,CAAC,gBAAgB,CAA8B;IAC/D,OAAO,CAAC,MAAM,CAAQ;IACtB,OAAO,CAAC,YAAY,CAA2B;IAE/C,OAAO;IAMP,IAAI,QAAQ,IAAI,OAAO,CAEtB;WAEY,MAAM,CAAC,OAAO,GAAE,mBAAwB,GAAG,OAAO,CAAC,YAAY,CAAC;IAUvE,MAAM,CAAC,OAAO,GAAE,IAAI,CAAC,aAAa,EAAE,KAAK,CAAM,GAAG,OAAO,CAAC,YAAY,CAAC;IAIvE,MAAM,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,GAAE,IAAI,CAAC,aAAa,EAAE,KAAK,CAAM,GAAG,OAAO,CAAC,YAAY,EAAE,CAAC;IAIxF,GAAG,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,GAAE,IAAI,CAAC,aAAa,EAAE,KAAK,CAAM,GAAG,OAAO,CAAC,SAAS,CAAC;IAIhF,QAAQ,CACZ,KAAK,EAAE,MAAM,EACb,OAAO,GAAE,IAAI,CAAC,eAAe,EAAE,KAAK,CAAM,GACzC,OAAO,CAAC,cAAc,CAAC;IAIpB,cAAc,CAClB,QAAQ,EAAE,MAAM,EAChB,OAAO,GAAE,IAAI,CAAC,qBAAqB,EAAE,KAAK,CAAM,GAC/C,OAAO,CAAC,gBAAgB,CAAC;IAItB,MAAM,IAAI,OAAO,CAAC,0BAA0B,CAAC;IAI7C,OAAO,IAAI,OAAO,CAAC,0BAA0B,CAAC;IAI9C,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAW5B,OAAO,CAAC,UAAU;IAMlB,OAAO,CAAC,GAAG;CAgBZ;AAED,wBAAsB,kBAAkB,CAAC,OAAO,GAAE,mBAAwB,GAAG,OAAO,CAAC,YAAY,CAAC,CAEjG"}
+{"version":3,"file":"client.d.ts","sourceRoot":"","sources":["../src/client.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAA;AASvC,OAAO,KAAK,EACV,SAAS,EAET,qBAAqB,EACrB,gBAAgB,EAChB,aAAa,EACb,YAAY,EACZ,0BAA0B,EAC1B,0BAA0B,EAC1B,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,aAAa,EACb,YAAY,EACb,MAAM,YAAY,CAAA;AAEnB,MAAM,WAAW,mBAAmB;IAClC,GAAG,CAAC,EAAE,QAAQ,CAAA;CACf;AAED,qBAAa,YAAY;IACvB,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAA;IAC5B,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAQ;IAC/B,OAAO,CAAC,QAAQ,CAAC,UAAU,CAAY;IACvC,OAAO,CAAC,QAAQ,CAAC,gBAAgB,CAA8B;IAC/D,OAAO,CAAC,MAAM,CAAQ;IACtB,OAAO,CAAC,YAAY,CAA2B;IAE/C,OAAO;IAMP,IAAI,QAAQ,IAAI,OAAO,CAEtB;WAEY,MAAM,CAAC,OAAO,GAAE,mBAAwB,GAAG,OAAO,CAAC,YAAY,CAAC;IAUvE,MAAM,CAAC,OAAO,GAAE,IAAI,CAAC,aAAa,EAAE,KAAK,CAAM,GAAG,OAAO,CAAC,YAAY,CAAC;IAIvE,MAAM,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,GAAE,IAAI,CAAC,aAAa,EAAE,KAAK,CAAM,GAAG,OAAO,CAAC,YAAY,EAAE,CAAC;IAIxF,GAAG,CAAC,KAAK,EAAE,MAAM,EAAE,OAAO,GAAE,IAAI,CAAC,aAAa,EAAE,KAAK,CAAM,GAAG,OAAO,CAAC,SAAS,CAAC;IAIhF,QAAQ,CACZ,KAAK,EAAE,MAAM,EACb,OAAO,GAAE,IAAI,CAAC,eAAe,EAAE,KAAK,CAAM,GACzC,OAAO,CAAC,cAAc,CAAC;IAIpB,cAAc,CAClB,QAAQ,EAAE,MAAM,EAChB,OAAO,GAAE,IAAI,CAAC,qBAAqB,EAAE,KAAK,CAAM,GAC/C,OAAO,CAAC,gBAAgB,CAAC;IAItB,MAAM,CAAC,OAAO,GAAE,gBAAqB,GAAG,OAAO,CAAC,0BAA0B,CAAC;IAI3E,OAAO,CAAC,OAAO,GAAE,gBAAqB,GAAG,OAAO,CAAC,0BAA0B,CAAC;IAI5E,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAW5B,OAAO,CAAC,UAAU;IAMlB,OAAO,CAAC,GAAG;CAgBZ;AAED,wBAAsB,kBAAkB,CAAC,OAAO,GAAE,mBAAwB,GAAG,OAAO,CAAC,YAAY,CAAC,CAEjG"}

package/dist/client.js

@@ -45,11 +45,11 @@ export class RagmirClient {
     async expandCitation(citation, options = {}) {
         return this.run(() => expandCitationWithConfig(citation, options, this.config, this.connection));
     }
-    async status() {
-        return this.run(() => getKnowledgeBaseContext(this.projectRoot));
+    async status(options = {}) {
+        return this.run(() => getKnowledgeBaseContext(this.projectRoot, options));
     }
-    async sources() {
-        return this.run(() => getKnowledgeBaseSourceCatalog(this.projectRoot));
+    async sources(options = {}) {
+        return this.run(() => getKnowledgeBaseSourceCatalog(this.projectRoot, options));
     }
     async close() {
         if (!this.closePromise) {

package/dist/client.js.map

@@ -1 +1 @@
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+{"version":3,"file":"client.js","sourceRoot":"","sources":["../src/client.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACxC,OAAO,EAAE,uBAAuB,EAAE,6BAA6B,EAAE,MAAM,wBAAwB,CAAA;AAC/F,OAAO,EAAE,oBAAoB,EAAE,WAAW,EAAE,MAAM,aAAa,CAAA;AAC/D,OAAO,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAA;AAC9C,OAAO,EAAE,aAAa,EAAE,wBAAwB,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAA;AACtF,OAAO,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAA;AAClD,OAAO,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAqBzC,MAAM,OAAO,YAAY;IACd,WAAW,CAAQ;IACX,MAAM,CAAQ;IACd,UAAU,CAAY;IACtB,gBAAgB,GAAG,IAAI,GAAG,EAAoB,CAAA;IACvD,MAAM,GAAG,KAAK,CAAA;IACd,YAAY,CAA2B;IAE/C,YAAoB,MAAc,EAAE,UAAsB;QACxD,IAAI,CAAC,MAAM,GAAG,MAAM,CAAA;QACpB,IAAI,CAAC,UAAU,GAAG,UAAU,CAAA;QAC5B,IAAI,CAAC,WAAW,GAAG,MAAM,CAAC,WAAW,CAAA;IACvC,CAAC;IAED,IAAI,QAAQ;QACV,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,UAA+B,EAAE;QACnD,IAAI,CAAC;YACH,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC,CAAC,CAAA;YACrE,MAAM,UAAU,GAAG,MAAM,YAAY,CAAC,MAAM,CAAC,CAAA;YAC7C,OAAO,IAAI,YAAY,CAAC,MAAM,EAAE,UAAU,CAAC,CAAA;QAC7C,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,MAAM,oBAAoB,CAAC,KAAK,CAAC,CAAA;QACnC,CAAC;IACH,CAAC;IAED,KAAK,CAAC,MAAM,CAAC,UAAsC,EAAE;QACnD,OAAO,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,gBAAgB,CAAC,IAAI,CAAC,MAAM,EAAE,OAAO,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC,CAAA;IAChF,CAAC;IAED,KAAK,CAAC,MAAM,CAAC,KAAa,EAAE,UAAsC,EAAE;QAClE,OAAO,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,gBAAgB,CAAC,KAAK,EAAE,OAAO,EAAE,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC,CAAA;IACvF,CAAC;IAED,KAAK,CAAC,GAAG,CAAC,KAAa,EAAE,UAAsC,EAAE;QAC/D,OAAO,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,aAAa,CAAC,KAAK,EAAE,OAAO,EAAE,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC,CAAA;IACpF,CAAC;IAED,KAAK,CAAC,QAAQ,CACZ,KAAa,EACb,UAAwC,EAAE;QAE1C,OAAO,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,kBAAkB,CAAC,KAAK,EAAE,OAAO,EAAE,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC,CAAA;IACzF,CAAC;IAED,KAAK,CAAC,cAAc,CAClB,QAAgB,EAChB,UAA8C,EAAE;QAEhD,OAAO,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,wBAAwB,CAAC,QAAQ,EAAE,OAAO,EAAE,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,UAAU,CAAC,CAAC,CAAA;IAClG,CAAC;IAED,KAAK,CAAC,MAAM,CAAC,UAA4B,EAAE;QACzC,OAAO,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,uBAAuB,CAAC,IAAI,CAAC,WAAW,EAAE,OAAO,CAAC,CAAC,CAAA;IAC3E,CAAC;IAED,KAAK,CAAC,OAAO,CAAC,UAA4B,EAAE;QAC1C,OAAO,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,6BAA6B,CAAC,IAAI,CAAC,WAAW,EAAE,OAAO,CAAC,CAAC,CAAA;IACjF,CAAC;IAED,KAAK,CAAC,KAAK;QACT,IAAI,CAAC,IAAI,CAAC,YAAY,EAAE,CAAC;YACvB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAA;YAClB,IAAI,CAAC,YAAY,GAAG,CAAC,KAAK,IAAI,EAAE;gBAC9B,MAAM,OAAO,CAAC,UAAU,CAAC,CAAC,GAAG,IAAI,CAAC,gBAAgB,CAAC,CAAC,CAAA;gBACpD,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,CAAA;YACzB,CAAC,CAAC,EAAE,CAAA;QACN,CAAC;QACD,MAAM,IAAI,CAAC,YAAY,CAAA;IACzB,CAAC;IAEO,UAAU;QAChB,IAAI,IAAI,CAAC,MAAM,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,MAAM,EAAE,EAAE,CAAC;YAC7C,MAAM,IAAI,WAAW,CAAC,eAAe,EAAE,0BAA0B,CAAC,CAAA;QACpE,CAAC;IACH,CAAC;IAEO,GAAG,CAAI,SAA2B;QACxC,IAAI,CAAC,UAAU,EAAE,CAAA;QACjB,MAAM,MAAM,GAAG,CAAC,KAAK,IAAI,EAAE;YACzB,IAAI,CAAC;gBACH,OAAO,MAAM,SAAS,EAAE,CAAA;YAC1B,CAAC;YAAC,OAAO,KAAK,EAAE,CAAC;gBACf,MAAM,oBAAoB,CAAC,KAAK,CAAC,CAAA;YACnC,CAAC;QACH,CAAC,CAAC,EAAE,CAAA;QACJ,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC,MAAM,CAAC,CAAA;QACjC,KAAK,MAAM,CAAC,IAAI,CACd,GAAG,EAAE,CAAC,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,MAAM,CAAC,EAC1C,GAAG,EAAE,CAAC,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,MAAM,CAAC,CAC3C,CAAA;QACD,OAAO,MAAM,CAAA;IACf,CAAC;CACF;AAED,MAAM,CAAC,KAAK,UAAU,kBAAkB,CAAC,UAA+B,EAAE;IACxE,OAAO,YAAY,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;AACrC,CAAC"}

package/dist/config.js

@@ -228,7 +228,6 @@ function readEmbeddingProviderEnv(name, legacyName, fallback) {
     }
     const parsed = embeddingProviderSchema.safeParse(raw);
     if (!parsed.success) {
-        warnInvalidEnv(name, raw, `"local-hash" or "transformers"`);
         return fallback;
     }
     return parsed.data;
@@ -251,9 +250,8 @@ function readPositiveIntEnv(name, legacyName, fallback) {
     if (!raw) {
         return fallback;
     }
-    const value = Number.parseInt(raw, 10);
-    if (!(Number.isInteger(value) && value > 0)) {
-        warnInvalidEnv(name, raw, "a positive integer");
+    const value = Number(raw);
+    if (!(Number.isSafeInteger(value) && value > 0)) {
         return fallback;
     }
     return value;
@@ -263,25 +261,19 @@ function readIntegerAtLeastEnv(name, legacyName, minimum, fallback) {
     if (!raw) {
         return fallback;
     }
-    const value = Number.parseInt(raw, 10);
-    if (!(Number.isInteger(value) && value >= minimum)) {
-        warnInvalidEnv(name, raw, `an integer greater than or equal to ${minimum}`);
+    const value = Number(raw);
+    if (!(Number.isSafeInteger(value) && value >= minimum)) {
         return fallback;
     }
     return value;
 }
-function warnInvalidEnv(name, raw, expected) {
-    // Only the CLI writes to stdout; config warnings go to stderr so the operator
-    // notices an env override that was silently ignored (e.g. RAGMIR_TOP_K=abc).
-    console.warn(`[ragmir] Ignoring invalid ${name}=${JSON.stringify(raw)} (expected ${expected}); using the default instead.`);
-}
 function readNonNegativeIntEnv(name, legacyName, fallback) {
     const raw = process.env[name] ?? process.env[legacyName];
     if (!raw) {
         return fallback;
     }
-    const value = Number.parseInt(raw, 10);
-    return Number.isInteger(value) && value >= 0 ? value : fallback;
+    const value = Number(raw);
+    return Number.isSafeInteger(value) && value >= 0 ? value : fallback;
 }
 function readExtensionsEnv(name, legacyName, fallback) {
     const raw = process.env[name] ?? process.env[legacyName];