@jcode.labs/ragmir 2.10.0 → 2.12.0

package/dist/gitignore.js.map

@@ -1 +1 @@
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+{"version":3,"file":"gitignore.js","sourceRoot":"","sources":["../src/gitignore.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAA;AACpC,OAAO,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,kBAAkB,CAAA;AACtD,OAAO,IAAI,MAAM,WAAW,CAAA;AAC5B,OAAO,EAAE,sBAAsB,EAAE,MAAM,eAAe,CAAA;AAEtD,MAAM,CAAC,MAAM,wBAAwB,GAAG,CAAC,sBAAsB,CAAC,CAAA;AAEhE,MAAM,CAAC,KAAK,UAAU,qBAAqB,CACzC,GAAG,GAAG,OAAO,CAAC,GAAG,EAAE,EACnB,oBAAuC,EAAE;IAEzC,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,CAAA;IAC9B,MAAM,aAAa,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,YAAY,CAAC,CAAA;IACnD,MAAM,OAAO,GAAG,UAAU,CAAC,aAAa,CAAC,CAAC,CAAC,CAAC,MAAM,QAAQ,CAAC,aAAa,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,EAAE,CAAA;IACtF,MAAM,YAAY,GAAG,IAAI,GAAG,CAC1B,OAAO;SACJ,KAAK,CAAC,OAAO,CAAC;SACd,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,IAAI,EAAE,CAAC;SAC1B,MAAM,CAAC,OAAO,CAAC,CACnB,CAAA;IACD,MAAM,cAAc,GAAG,CAAC,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,wBAAwB,EAAE,GAAG,iBAAiB,CAAC,CAAC,CAAC,CAAA;IACxF,MAAM,cAAc,GAAG,cAAc,CAAC,MAAM,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,CAAC,YAAY,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAA;IAEjF,IAAI,cAAc,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QAChC,OAAO,KAAK,CAAA;IACd,CAAC;IAED,MAAM,eAAe,GAAG,YAAY,CAAC,GAAG,CAAC,UAAU,CAAC,IAAI,YAAY,CAAC,GAAG,CAAC,gBAAgB,CAAC,CAAA;IAC1F,MAAM,KAAK,GAAG,CAAC,eAAe,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,UAAU,EAAE,GAAG,cAAc,CAAC;SACxE,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,KAAK,SAAS,CAAC;SACpC,IAAI,CAAC,IAAI,CAAC,CAAA;IACb,MAAM,MAAM,GAAG,OAAO,CAAC,OAAO,EAAE,CAAA;IAChC,MAAM,IAAI,GAAG,GAAG,MAAM,CAAC,CAAC,CAAC,GAAG,MAAM,MAAM,CAAC,CAAC,CAAC,EAAE,GAAG,KAAK,IAAI,CAAA;IAEzD,MAAM,SAAS,CAAC,aAAa,EAAE,IAAI,EAAE,MAAM,CAAC,CAAA;IAC5C,OAAO,IAAI,CAAA;AACb,CAAC"}

package/dist/index.d.ts

@@ -1,5 +1,6 @@
 export { accessLogUsageReport } from "./access-log.js";
 export { loadConfig } from "./config.js";
+export { getKnowledgeBaseContext, getKnowledgeBaseSourceCatalog, } from "./context-resources.js";
 export { destroyIndex } from "./destroy.js";
 export { doctor } from "./doctor.js";
 export { clearTransformersCache, pullEmbeddingModel } from "./embeddings.js";
@@ -7,12 +8,14 @@ export { evaluateGoldenQueries } from "./evaluate.js";
 export { getIndexFreshnessWarning, getLexicalScanWarning, INDEX_SCHEMA_VERSION, } from "./index-diagnostics.js";
 export { audit, ingest } from "./ingest.js";
 export { initProject } from "./init.js";
+export { discoverKnowledgeBases, knowledgeBaseIdentity } from "./knowledge-bases.js";
 export { ingestionLimits } from "./limits.js";
 export { serveMcp } from "./mcp.js";
 export type { ConfigurePdfOcrOptions, ConfigurePdfOcrResult, ExtractPdfPageOptions, OcrExecutableStatus, PdfOcrEngine, PdfOcrEngineSelection, PdfOcrStatus, } from "./ocr.js";
 export { configurePdfOcr, extractPdfPage, inspectPdfOcr } from "./ocr.js";
 export type { PackageManager, RagmirCommand } from "./package-manager.js";
 export { detectPackageManager, kbCommand, ragmirCommand, rgrCommand } from "./package-manager.js";
+export { previewChunks } from "./preview.js";
 export type { PromptRouteDecision, PromptRouteTool } from "./prompt-routing.js";
 export { routePrompt } from "./prompt-routing.js";
 export { ask, expandCitation, search } from "./query.js";
@@ -22,10 +25,10 @@ export { securityAudit } from "./security.js";
 export { enableSemanticEmbeddings } from "./semantic-config.js";
 export type { SetupOptions, SetupResult, SetupSemanticResult } from "./setup.js";
 export { setupProject } from "./setup.js";
-export type { AgentHelperFile, AgentInstallMode, AgentInstallScope, AgentSkillInstallation, AgentTarget, InstallAgentSkillsOptions, InstallAgentSkillsResult, InstallSkillOptions, InstallSkillResult, } from "./skill.js";
-export { bundledSkillPath, installAgentSkills, installSkill, parseAgentTargets, SUPPORTED_AGENT_TARGETS, } from "./skill.js";
+export type { AgentHelperFile, AgentInstallMode, AgentInstallScope, AgentIntegrationReport, AgentSkillInstallation, AgentTarget, InstallAgentSkillsOptions, InstallAgentSkillsResult, InstallSkillOptions, InstallSkillResult, RagmirRunnerMode, } from "./skill.js";
+export { bundledSkillPath, inspectAgentIntegration, installAgentSkills, installSkill, parseAgentTargets, SUPPORTED_AGENT_TARGETS, } from "./skill.js";
 export type { AddSourceEntriesOptions, AddSourceEntriesResult, SourceEntriesResult, } from "./sources.js";
 export { addSourceEntries, listSourceEntries } from "./sources.js";
-export type { AccessLogAction, AccessLogUsageOptions, AccessLogUsageReport, AskResult, AuditReport, CodeEvidence, CompactSearchResult, Config, DestroyIndexResult, DoctorReport, EvaluationCaseResult, EvaluationOptions, EvaluationResult, ExpandCitationOptions, ExpandedCitation, GoldenQuery, IndexManifest, IndexManifestFile, IngestionLimitsReport, IngestResult, McpOutputTool, McpOutputUsageReport, ParsedPage, PrivacyProfile, ResearchEvidence, ResearchOptions, ResearchReport, RetrievalProfile, SearchContextChunk, SearchResult, SecurityAuditReport, SourceDiagnostics, SourceDuplicateCandidate, SourcePathCandidate, } from "./types.js";
+export type { AccessLogAction, AccessLogUsageOptions, AccessLogUsageReport, AskResult, AuditReport, ChunkStats, CodeEvidence, CompactSearchResult, Config, DestroyIndexResult, DoctorReport, EvaluationCaseResult, EvaluationOptions, EvaluationResult, ExpandCitationOptions, ExpandedCitation, GoldenQuery, IndexManifest, IndexManifestFile, IngestionLimitsReport, IngestResult, KnowledgeBaseContextReport, KnowledgeBaseIdentity, KnowledgeBaseInfo, KnowledgeBaseInventory, KnowledgeBaseSourceCatalog, McpOutputTool, McpOutputUsageReport, ParsedPage, PreviewChunk, PreviewChunksOptions, PreviewFile, PreviewReport, PrivacyProfile, ResearchEvidence, ResearchOptions, ResearchReport, RetrievalProfile, SearchContextChunk, SearchResult, SearchScoreExplanation, SecurityAuditReport, SourceDiagnostics, SourceDuplicateCandidate, SourcePathCandidate, } from "./types.js";
 export { VERSION } from "./version.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,oBAAoB,EAAE,MAAM,iBAAiB,CAAA;AACtD,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACxC,OAAO,EACL,uBAAuB,EACvB,6BAA6B,GAC9B,MAAM,wBAAwB,CAAA;AAC/B,OAAO,EAAE,YAAY,EAAE,MAAM,cAAc,CAAA;AAC3C,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AACpC,OAAO,EAAE,sBAAsB,EAAE,kBAAkB,EAAE,MAAM,iBAAiB,CAAA;AAC5E,OAAO,EAAE,qBAAqB,EAAE,MAAM,eAAe,CAAA;AACrD,OAAO,EACL,wBAAwB,EACxB,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,wBAAwB,CAAA;AAC/B,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AAC3C,OAAO,EAAE,WAAW,EAAE,MAAM,WAAW,CAAA;AACvC,OAAO,EAAE,sBAAsB,EAAE,qBAAqB,EAAE,MAAM,sBAAsB,CAAA;AACpF,OAAO,EAAE,eAAe,EAAE,MAAM,aAAa,CAAA;AAC7C,OAAO,EAAE,QAAQ,EAAE,MAAM,UAAU,CAAA;AACnC,YAAY,EACV,sBAAsB,EACtB,qBAAqB,EACrB,qBAAqB,EACrB,mBAAmB,EACnB,YAAY,EACZ,qBAAqB,EACrB,YAAY,GACb,MAAM,UAAU,CAAA;AACjB,OAAO,EAAE,eAAe,EAAE,cAAc,EAAE,aAAa,EAAE,MAAM,UAAU,CAAA;AACzE,YAAY,EAAE,cAAc,EAAE,aAAa,EAAE,MAAM,sBAAsB,CAAA;AACzE,OAAO,EAAE,oBAAoB,EAAE,SAAS,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAA;AACjG,OAAO,EAAE,aAAa,EAAE,MAAM,cAAc,CAAA;AAC5C,YAAY,EAAE,mBAAmB,EAAE,eAAe,EAAE,MAAM,qBAAqB,CAAA;AAC/E,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAA;AACjD,OAAO,EAAE,GAAG,EAAE,cAAc,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AACxD,OAAO,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAA;AAC3C,OAAO,EAAE,qBAAqB,EAAE,oBAAoB,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACrF,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAC7C,OAAO,EAAE,wBAAwB,EAAE,MAAM,sBAAsB,CAAA;AAC/D,YAAY,EAAE,YAAY,EAAE,WAAW,EAAE,mBAAmB,EAAE,MAAM,YAAY,CAAA;AAChF,OAAO,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AACzC,YAAY,EACV,eAAe,EACf,gBAAgB,EAChB,iBAAiB,EACjB,sBAAsB,EACtB,sBAAsB,EACtB,WAAW,EACX,yBAAyB,EACzB,wBAAwB,EACxB,mBAAmB,EACnB,kBAAkB,EAClB,gBAAgB,GACjB,MAAM,YAAY,CAAA;AACnB,OAAO,EACL,gBAAgB,EAChB,uBAAuB,EACvB,kBAAkB,EAClB,YAAY,EACZ,iBAAiB,EACjB,uBAAuB,GACxB,MAAM,YAAY,CAAA;AACnB,YAAY,EACV,uBAAuB,EACvB,sBAAsB,EACtB,mBAAmB,GACpB,MAAM,cAAc,CAAA;AACrB,OAAO,EAAE,gBAAgB,EAAE,iBAAiB,EAAE,MAAM,cAAc,CAAA;AAClE,YAAY,EACV,eAAe,EACf,qBAAqB,EACrB,oBAAoB,EACpB,SAAS,EACT,WAAW,EACX,UAAU,EACV,YAAY,EACZ,mBAAmB,EACnB,MAAM,EACN,kBAAkB,EAClB,YAAY,EACZ,oBAAoB,EACpB,iBAAiB,EACjB,gBAAgB,EAChB,qBAAqB,EACrB,gBAAgB,EAChB,WAAW,EACX,aAAa,EACb,iBAAiB,EACjB,qBAAqB,EACrB,YAAY,EACZ,0BAA0B,EAC1B,qBAAqB,EACrB,iBAAiB,EACjB,sBAAsB,EACtB,0BAA0B,EAC1B,aAAa,EACb,oBAAoB,EACpB,UAAU,EACV,YAAY,EACZ,oBAAoB,EACpB,WAAW,EACX,aAAa,EACb,cAAc,EACd,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,gBAAgB,EAChB,kBAAkB,EAClB,YAAY,EACZ,sBAAsB,EACtB,mBAAmB,EACnB,iBAAiB,EACjB,wBAAwB,EACxB,mBAAmB,GACpB,MAAM,YAAY,CAAA;AACnB,OAAO,EAAE,OAAO,EAAE,MAAM,cAAc,CAAA"}

package/dist/index.js

@@ -1,5 +1,6 @@
 export { accessLogUsageReport } from "./access-log.js";
 export { loadConfig } from "./config.js";
+export { getKnowledgeBaseContext, getKnowledgeBaseSourceCatalog, } from "./context-resources.js";
 export { destroyIndex } from "./destroy.js";
 export { doctor } from "./doctor.js";
 export { clearTransformersCache, pullEmbeddingModel } from "./embeddings.js";
@@ -7,10 +8,12 @@ export { evaluateGoldenQueries } from "./evaluate.js";
 export { getIndexFreshnessWarning, getLexicalScanWarning, INDEX_SCHEMA_VERSION, } from "./index-diagnostics.js";
 export { audit, ingest } from "./ingest.js";
 export { initProject } from "./init.js";
+export { discoverKnowledgeBases, knowledgeBaseIdentity } from "./knowledge-bases.js";
 export { ingestionLimits } from "./limits.js";
 export { serveMcp } from "./mcp.js";
 export { configurePdfOcr, extractPdfPage, inspectPdfOcr } from "./ocr.js";
 export { detectPackageManager, kbCommand, ragmirCommand, rgrCommand } from "./package-manager.js";
+export { previewChunks } from "./preview.js";
 export { routePrompt } from "./prompt-routing.js";
 export { ask, expandCitation, search } from "./query.js";
 export { redactText } from "./redaction.js";
@@ -18,7 +21,7 @@ export { compactResearchReport, compactSearchResults, research } from "./researc
 export { securityAudit } from "./security.js";
 export { enableSemanticEmbeddings } from "./semantic-config.js";
 export { setupProject } from "./setup.js";
-export { bundledSkillPath, installAgentSkills, installSkill, parseAgentTargets, SUPPORTED_AGENT_TARGETS, } from "./skill.js";
+export { bundledSkillPath, inspectAgentIntegration, installAgentSkills, installSkill, parseAgentTargets, SUPPORTED_AGENT_TARGETS, } from "./skill.js";
 export { addSourceEntries, listSourceEntries } from "./sources.js";
 export { VERSION } from "./version.js";
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,oBAAoB,EAAE,MAAM,iBAAiB,CAAA;AACtD,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACxC,OAAO,EACL,uBAAuB,EACvB,6BAA6B,GAC9B,MAAM,wBAAwB,CAAA;AAC/B,OAAO,EAAE,YAAY,EAAE,MAAM,cAAc,CAAA;AAC3C,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AACpC,OAAO,EAAE,sBAAsB,EAAE,kBAAkB,EAAE,MAAM,iBAAiB,CAAA;AAC5E,OAAO,EAAE,qBAAqB,EAAE,MAAM,eAAe,CAAA;AACrD,OAAO,EACL,wBAAwB,EACxB,qBAAqB,EACrB,oBAAoB,GACrB,MAAM,wBAAwB,CAAA;AAC/B,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AAC3C,OAAO,EAAE,WAAW,EAAE,MAAM,WAAW,CAAA;AACvC,OAAO,EAAE,sBAAsB,EAAE,qBAAqB,EAAE,MAAM,sBAAsB,CAAA;AACpF,OAAO,EAAE,eAAe,EAAE,MAAM,aAAa,CAAA;AAC7C,OAAO,EAAE,QAAQ,EAAE,MAAM,UAAU,CAAA;AAUnC,OAAO,EAAE,eAAe,EAAE,cAAc,EAAE,aAAa,EAAE,MAAM,UAAU,CAAA;AAEzE,OAAO,EAAE,oBAAoB,EAAE,SAAS,EAAE,aAAa,EAAE,UAAU,EAAE,MAAM,sBAAsB,CAAA;AACjG,OAAO,EAAE,aAAa,EAAE,MAAM,cAAc,CAAA;AAE5C,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAA;AACjD,OAAO,EAAE,GAAG,EAAE,cAAc,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AACxD,OAAO,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAA;AAC3C,OAAO,EAAE,qBAAqB,EAAE,oBAAoB,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AACrF,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAC7C,OAAO,EAAE,wBAAwB,EAAE,MAAM,sBAAsB,CAAA;AAE/D,OAAO,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAczC,OAAO,EACL,gBAAgB,EAChB,uBAAuB,EACvB,kBAAkB,EAClB,YAAY,EACZ,iBAAiB,EACjB,uBAAuB,GACxB,MAAM,YAAY,CAAA;AAMnB,OAAO,EAAE,gBAAgB,EAAE,iBAAiB,EAAE,MAAM,cAAc,CAAA;AAgDlE,OAAO,EAAE,OAAO,EAAE,MAAM,cAAc,CAAA"}

package/dist/ingest.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"ingest.d.ts","sourceRoot":"","sources":["../src/ingest.ts"],"names":[],"mappings":"AAuBA,OAAO,KAAK,EACV,WAAW,EAGX,aAAa,EACb,YAAY,EAMb,MAAM,YAAY,CAAA;AAmBnB,wBAAsB,MAAM,CAAC,OAAO,GAAE,aAAkB,GAAG,OAAO,CAAC,YAAY,CAAC,CA6L/E;AA0BD,wBAAsB,KAAK,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,WAAW,CAAC,CAwErE"}
+{"version":3,"file":"ingest.d.ts","sourceRoot":"","sources":["../src/ingest.ts"],"names":[],"mappings":"AAwBA,OAAO,KAAK,EACV,WAAW,EAGX,aAAa,EACb,YAAY,EAMb,MAAM,YAAY,CAAA;AAmBnB,wBAAsB,MAAM,CAAC,OAAO,GAAE,aAAkB,GAAG,OAAO,CAAC,YAAY,CAAC,CA6L/E;AA0BD,wBAAsB,KAAK,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,WAAW,CAAC,CA+ErE"}

package/dist/ingest.js

@@ -1,4 +1,5 @@
 import { recordAccess } from "./access-log.js";
+import { summarizeChunkStats } from "./chunk-stats.js";
 import { chunkDocument, chunkSearchText } from "./chunking.js";
 import { loadConfig } from "./config.js";
 import { VECTOR_DISTANCE_METRIC } from "./defaults.js";
@@ -234,9 +235,13 @@ export async function audit(cwd = process.cwd()) {
             missingFromIndex: supportedFiles.filter((file) => !emptyTextFiles.has(file)),
             staleInIndex: [],
             totalChunks: 0,
+            chunkStats: summarizeChunkStats([]),
         };
     }
-    const rows = (await table.query().select(["relativePath", "checksum"]).toArray());
+    const rows = (await table
+        .query()
+        .select(["relativePath", "checksum", "contextPath", "text"])
+        .toArray());
     const counts = new Map();
     const checksums = new Map();
     for (const row of rows) {
@@ -274,6 +279,7 @@ export async function audit(cwd = process.cwd()) {
         })
             .sort(),
         totalChunks: rows.length,
+        chunkStats: summarizeChunkStats(rows),
     };
 }
 function sourceInventoryMetrics(files) {

package/dist/ingest.js.map

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package/dist/knowledge-bases.d.ts

@@ -0,0 +1,4 @@
+import type { KnowledgeBaseIdentity, KnowledgeBaseInventory } from "./types.js";
+export declare function knowledgeBaseIdentity(start?: string): KnowledgeBaseIdentity | null;
+export declare function discoverKnowledgeBases(start?: string): Promise<KnowledgeBaseInventory>;
+//# sourceMappingURL=knowledge-bases.d.ts.map

package/dist/knowledge-bases.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"knowledge-bases.d.ts","sourceRoot":"","sources":["../src/knowledge-bases.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,qBAAqB,EAAqB,sBAAsB,EAAE,MAAM,YAAY,CAAA;AA2BlG,wBAAgB,qBAAqB,CAAC,KAAK,SAAgB,GAAG,qBAAqB,GAAG,IAAI,CAYzF;AAED,wBAAsB,sBAAsB,CAC1C,KAAK,SAAgB,GACpB,OAAO,CAAC,sBAAsB,CAAC,CAsCjC"}

package/dist/knowledge-bases.js

@@ -0,0 +1,113 @@
+import { existsSync } from "node:fs";
+import path from "node:path";
+import fg from "fast-glob";
+import { CONFIG_PATH, LEGACY_CONFIG_PATH } from "./defaults.js";
+const KNOWLEDGE_BASE_PATTERNS = [
+    CONFIG_PATH,
+    `**/${CONFIG_PATH}`,
+    LEGACY_CONFIG_PATH,
+    `**/${LEGACY_CONFIG_PATH}`,
+];
+const KNOWLEDGE_BASE_DISCOVERY_IGNORES = [
+    "**/.git/**",
+    "**/node_modules/**",
+    "**/.pnpm/**",
+    "**/dist/**",
+    "**/build/**",
+    "**/.next/**",
+    "**/.astro/**",
+    "**/.svelte-kit/**",
+    "**/.turbo/**",
+    "**/coverage/**",
+];
+export function knowledgeBaseIdentity(start = process.cwd()) {
+    const configuredRoots = configuredAncestors(start);
+    const active = configuredRoots[0];
+    const workspace = configuredRoots.at(-1);
+    if (!active || !workspace) {
+        return null;
+    }
+    return {
+        id: knowledgeBaseId(workspace.projectRoot, active.projectRoot),
+        projectRoot: active.projectRoot,
+        workspaceRoot: workspace.projectRoot,
+    };
+}
+export async function discoverKnowledgeBases(start = process.cwd()) {
+    const resolvedStart = path.resolve(start);
+    const identity = knowledgeBaseIdentity(resolvedStart);
+    const workspaceRoot = identity?.workspaceRoot ?? resolvedStart;
+    const configPaths = await fg(KNOWLEDGE_BASE_PATTERNS, {
+        cwd: workspaceRoot,
+        absolute: true,
+        dot: true,
+        onlyFiles: true,
+        unique: true,
+        followSymbolicLinks: false,
+        ignore: KNOWLEDGE_BASE_DISCOVERY_IGNORES,
+    });
+    const byProjectRoot = new Map();
+    for (const configPath of configPaths.sort()) {
+        const configuredRoot = configuredRootForConfig(configPath);
+        const existing = byProjectRoot.get(configuredRoot.projectRoot);
+        if (!existing || (existing.legacy && !configuredRoot.legacy)) {
+            byProjectRoot.set(configuredRoot.projectRoot, configuredRoot);
+        }
+    }
+    const bases = [...byProjectRoot.values()]
+        .map((base) => ({
+        id: knowledgeBaseId(workspaceRoot, base.projectRoot),
+        projectRoot: base.projectRoot,
+        configPath: base.configPath,
+        legacy: base.legacy,
+        active: base.projectRoot === identity?.projectRoot,
+    }))
+        .sort((left, right) => left.id.localeCompare(right.id));
+    return {
+        start: resolvedStart,
+        workspaceRoot,
+        activeProjectRoot: identity?.projectRoot ?? null,
+        activeId: identity?.id ?? null,
+        bases,
+    };
+}
+function configuredAncestors(start) {
+    const roots = [];
+    let current = path.resolve(start);
+    while (true) {
+        const configuredRoot = configuredRootAt(current);
+        if (configuredRoot) {
+            roots.push(configuredRoot);
+        }
+        const parent = path.dirname(current);
+        if (parent === current) {
+            return roots;
+        }
+        current = parent;
+    }
+}
+function configuredRootAt(projectRoot) {
+    const configPath = path.join(projectRoot, CONFIG_PATH);
+    if (existsSync(configPath)) {
+        return { projectRoot, configPath, legacy: false };
+    }
+    const legacyConfigPath = path.join(projectRoot, LEGACY_CONFIG_PATH);
+    if (existsSync(legacyConfigPath)) {
+        return { projectRoot, configPath: legacyConfigPath, legacy: true };
+    }
+    return null;
+}
+function configuredRootForConfig(configPath) {
+    const configDirectory = path.dirname(configPath);
+    const legacy = path.basename(configDirectory) === path.dirname(LEGACY_CONFIG_PATH);
+    return {
+        projectRoot: path.dirname(configDirectory),
+        configPath,
+        legacy,
+    };
+}
+function knowledgeBaseId(workspaceRoot, projectRoot) {
+    const relativePath = path.relative(workspaceRoot, projectRoot);
+    return relativePath.length === 0 ? "." : relativePath.split(path.sep).join("/");
+}
+//# sourceMappingURL=knowledge-bases.js.map

package/dist/knowledge-bases.js.map

@@ -0,0 +1 @@
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package/dist/mcp.d.ts

@@ -1,11 +1,13 @@
 export declare function serveMcp(cwd?: string): Promise<void>;
 export declare function resolveMcpProjectRoot(env?: NodeJS.ProcessEnv, fallback?: string): string;
-export declare function searchOptions(cwd: string, topK: number | undefined, contextRadius?: number | undefined, includePaths?: string[] | undefined, excludePaths?: string[] | undefined): Promise<{
+export declare function searchOptions(cwd: string, topK: number | undefined, contextRadius?: number | undefined, includePaths?: string[] | undefined, excludePaths?: string[] | undefined, contextPaths?: string[] | undefined, explain?: boolean | undefined): Promise<{
     cwd: string;
     topK?: number;
     contextRadius?: number;
     includePaths?: string[];
     excludePaths?: string[];
+    contextPaths?: string[];
+    explain?: boolean;
 }>;
 export declare function projectRelativeGoldenPath(cwd: string, goldenPath: string): string;
 //# sourceMappingURL=mcp.d.ts.map

package/dist/mcp.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"mcp.d.ts","sourceRoot":"","sources":["../src/mcp.ts"],"names":[],"mappings":"AAiFA,wBAAsB,QAAQ,CAAC,GAAG,SAA0B,GAAG,OAAO,CAAC,IAAI,CAAC,CA0R3E;AAED,wBAAgB,qBAAqB,CACnC,GAAG,GAAE,MAAM,CAAC,UAAwB,EACpC,QAAQ,SAAgB,GACvB,MAAM,CAYR;AA0BD,wBAAsB,aAAa,CACjC,GAAG,EAAE,MAAM,EACX,IAAI,EAAE,MAAM,GAAG,SAAS,EACxB,aAAa,CAAC,EAAE,MAAM,GAAG,SAAS,EAClC,YAAY,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,EACnC,YAAY,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,GAClC,OAAO,CAAC;IACT,GAAG,EAAE,MAAM,CAAA;IACX,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,aAAa,CAAC,EAAE,MAAM,CAAA;IACtB,YAAY,CAAC,EAAE,MAAM,EAAE,CAAA;IACvB,YAAY,CAAC,EAAE,MAAM,EAAE,CAAA;CACxB,CAAC,CAmBD;AAmBD,wBAAgB,yBAAyB,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,MAAM,CAQjF"}
+{"version":3,"file":"mcp.d.ts","sourceRoot":"","sources":["../src/mcp.ts"],"names":[],"mappings":"AAsFA,wBAAsB,QAAQ,CAAC,GAAG,SAA0B,GAAG,OAAO,CAAC,IAAI,CAAC,CAyW3E;AAED,wBAAgB,qBAAqB,CACnC,GAAG,GAAE,MAAM,CAAC,UAAwB,EACpC,QAAQ,SAAgB,GACvB,MAAM,CAYR;AAyCD,wBAAsB,aAAa,CACjC,GAAG,EAAE,MAAM,EACX,IAAI,EAAE,MAAM,GAAG,SAAS,EACxB,aAAa,CAAC,EAAE,MAAM,GAAG,SAAS,EAClC,YAAY,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,EACnC,YAAY,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,EACnC,YAAY,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,EACnC,OAAO,CAAC,EAAE,OAAO,GAAG,SAAS,GAC5B,OAAO,CAAC;IACT,GAAG,EAAE,MAAM,CAAA;IACX,IAAI,CAAC,EAAE,MAAM,CAAA;IACb,aAAa,CAAC,EAAE,MAAM,CAAA;IACtB,YAAY,CAAC,EAAE,MAAM,EAAE,CAAA;IACvB,YAAY,CAAC,EAAE,MAAM,EAAE,CAAA;IACvB,YAAY,CAAC,EAAE,MAAM,EAAE,CAAA;IACvB,OAAO,CAAC,EAAE,OAAO,CAAA;CAClB,CAAC,CAuBD;AAmBD,wBAAgB,yBAAyB,CAAC,GAAG,EAAE,MAAM,EAAE,UAAU,EAAE,MAAM,GAAG,MAAM,CAQjF"}

package/dist/mcp.js

@@ -5,9 +5,11 @@ import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js"
 import { z } from "zod";
 import { accessLogUsageReport, recordMcpOutput } from "./access-log.js";
 import { findProjectConfig, loadConfig } from "./config.js";
+import { getKnowledgeBaseContext, getKnowledgeBaseSourceCatalog } from "./context-resources.js";
 import { RAGMIR_PROJECT_ROOT_ENV } from "./defaults.js";
 import { evaluateGoldenQueries } from "./evaluate.js";
 import { audit } from "./ingest.js";
+import { knowledgeBaseIdentity } from "./knowledge-bases.js";
 import { ingestionLimits } from "./limits.js";
 import { budgetMcpJson, fitAskPayload, fitExpandedCitation, fitResearchPayload, fitSearchPayload, MIN_MCP_OUTPUT_BYTES, resolveMcpOutputBudget, } from "./mcp-output.js";
 import { routePrompt } from "./prompt-routing.js";
@@ -23,6 +25,8 @@ const queryToolInputSchema = z.object({
     maxBytes: z.number().int().min(MIN_MCP_OUTPUT_BYTES).optional(),
     includePaths: z.array(z.string().min(1).max(500)).max(20).optional(),
     excludePaths: z.array(z.string().min(1).max(500)).max(20).optional(),
+    contextPaths: z.array(z.string().min(1).max(500)).max(20).optional(),
+    explain: z.boolean().optional(),
 });
 const askToolInputSchema = queryToolInputSchema.extend({
     compact: z.boolean().optional(),
@@ -35,6 +39,7 @@ const researchToolInputSchema = z.object({
     maxBytes: z.number().int().min(MIN_MCP_OUTPUT_BYTES).optional(),
     includePaths: z.array(z.string().min(1).max(500)).max(20).optional(),
     excludePaths: z.array(z.string().min(1).max(500)).max(20).optional(),
+    contextPaths: z.array(z.string().min(1).max(500)).max(20).optional(),
 });
 const searchToolInputSchema = queryToolInputSchema.extend({
     compact: z.boolean().optional(),
@@ -60,15 +65,27 @@ export async function serveMcp(cwd = resolveMcpProjectRoot()) {
         name: "ragmir",
         version: VERSION,
     });
+    server.registerResource("ragmir-context", "ragmir://context", {
+        title: "Ragmir Knowledge Base Context",
+        description: "Active base identity, readiness, freshness, coverage, and available operations.",
+        mimeType: "application/json",
+    }, async (uri) => jsonResource(uri, await getKnowledgeBaseContext(cwd)));
+    server.registerResource("ragmir-sources", "ragmir://sources", {
+        title: "Ragmir Source Catalog",
+        description: "Bounded source coverage, skipped-file counts, and index drift for the active base.",
+        mimeType: "application/json",
+    }, async (uri) => jsonResource(uri, await getKnowledgeBaseSourceCatalog(cwd)));
     server.registerTool("ragmir_status", {
         title: "Ragmir Status",
         description: "Show active Ragmir configuration and indexed chunk count.",
         inputSchema: z.object({}),
     }, async () => {
         const config = await loadConfig(cwd);
+        const identity = knowledgeBaseIdentity(config.projectRoot);
         const chunksIndexed = await countRows(config);
         const strict = config.privacyProfile === "strict";
         const output = {
+            knowledgeBaseId: identity?.id ?? null,
             projectRoot: strict ? "." : config.projectRoot,
             rawDir: strict ? path.relative(config.projectRoot, config.rawDir) : config.rawDir,
             storageDir: strict
@@ -114,9 +131,9 @@ export async function serveMcp(cwd = resolveMcpProjectRoot()) {
         title: "Ragmir Search",
         description: "Retrieve relevant passages from the local Ragmir knowledge base.",
         inputSchema: searchToolInputSchema,
-    }, async ({ query, topK, contextRadius, compact, maxBytes, includePaths, excludePaths }) => {
+    }, async ({ query, topK, contextRadius, compact, maxBytes, includePaths, excludePaths, contextPaths, explain, }) => {
         const config = await loadConfig(cwd);
-        const results = await search(query, await searchOptions(cwd, topK, contextRadius, includePaths, excludePaths));
+        const results = await search(query, await searchOptions(cwd, topK, contextRadius, includePaths, excludePaths, contextPaths, explain));
         const compactResults = compactSearchResults(results);
         const compactOutput = config.privacyProfile === "strict" || compact === true;
         const preferred = compactOutput ? compactResults : results;
@@ -136,9 +153,9 @@ export async function serveMcp(cwd = resolveMcpProjectRoot()) {
         title: "Ragmir Ask",
         description: "Return cited retrieval context for a question without calling an LLM.",
         inputSchema: askToolInputSchema,
-    }, async ({ query, topK, contextRadius, compact, maxBytes, includePaths, excludePaths }) => {
+    }, async ({ query, topK, contextRadius, compact, maxBytes, includePaths, excludePaths, contextPaths, explain, }) => {
         const config = await loadConfig(cwd);
-        const options = await searchOptions(cwd, topK, contextRadius, includePaths, excludePaths);
+        const options = await searchOptions(cwd, topK, contextRadius, includePaths, excludePaths, contextPaths, explain);
         let fullPayload;
         if (config.privacyProfile === "strict") {
             const results = await search(query, options);
@@ -173,14 +190,15 @@ export async function serveMcp(cwd = resolveMcpProjectRoot()) {
         title: "Ragmir Research",
         description: "Run an audit-backed multi-query research pass with cited evidence and optional code matches.",
         inputSchema: researchToolInputSchema,
-    }, async ({ query, topK, includeCode, compact, maxBytes, includePaths, excludePaths }) => {
+    }, async ({ query, topK, includeCode, compact, maxBytes, includePaths, excludePaths, contextPaths, }) => {
         const config = await loadConfig(cwd);
-        const options = await searchOptions(cwd, topK, undefined, includePaths, excludePaths);
+        const options = await searchOptions(cwd, topK, undefined, includePaths, excludePaths, contextPaths);
         const researchOptions = { cwd };
         addOption(researchOptions, "topK", options.topK);
         addOption(researchOptions, "includeCode", includeCode);
         addOption(researchOptions, "includePaths", options.includePaths);
         addOption(researchOptions, "excludePaths", options.excludePaths);
+        addOption(researchOptions, "contextPaths", options.contextPaths);
         const result = await research(query, researchOptions);
         const compactResult = compactResearchReport(result);
         const compactOutput = config.privacyProfile === "strict" || compact === true;
@@ -300,6 +318,17 @@ function textResult(value) {
         ],
     };
 }
+function jsonResource(uri, value) {
+    return {
+        contents: [
+            {
+                uri: uri.href,
+                mimeType: "application/json",
+                text: JSON.stringify(value, null, 2),
+            },
+        ],
+    };
+}
 async function recordBudgetedOutput(config, bounded) {
     await recordMcpOutput(config, {
         tool: bounded.metadata.tool,
@@ -309,7 +338,7 @@ async function recordBudgetedOutput(config, bounded) {
         truncated: bounded.metadata.truncated,
     });
 }
-export async function searchOptions(cwd, topK, contextRadius, includePaths, excludePaths) {
+export async function searchOptions(cwd, topK, contextRadius, includePaths, excludePaths, contextPaths, explain) {
     const config = await loadConfig(cwd);
     const boundedTopK = Math.min(topK ?? config.topK, config.mcpMaxTopK);
     const boundedContextRadius = contextRadius === undefined ? undefined : Math.min(Math.max(0, contextRadius), 3);
@@ -320,6 +349,8 @@ export async function searchOptions(cwd, topK, contextRadius, includePaths, excl
     addOption(result, "contextRadius", boundedContextRadius);
     addOption(result, "includePaths", includePaths);
     addOption(result, "excludePaths", excludePaths);
+    addOption(result, "contextPaths", contextPaths);
+    addOption(result, "explain", explain);
     return result;
 }
 async function evaluationOptions(cwd, goldenPath, topK) {

package/dist/mcp.js.map

@@ -1 +1 @@
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package/dist/package-manager.d.ts

@@ -1,4 +1,6 @@
 export type PackageManager = "pnpm" | "npm" | "yarn" | "bun";
+export declare const RGR_RUNNER_FILENAME = "run.cjs";
+export declare const RGR_RUNNER_PROBE_ARG = "--ragmir-runner-probe";
 export interface RagmirCommand {
     packageManager: PackageManager;
     command: string;

package/dist/package-manager.d.ts.map

@@ -1 +1 @@
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