@jcode.labs/mimir 0.4.4 → 0.4.5

package/README.md

@@ -17,7 +17,7 @@ same evidence through:
 - the `kb` CLI;
 - a TypeScript library API;
 - a local MCP stdio server for compatible AI agents;
-- portable agent skills copied with `kb install-skill`.
+- portable agent skills copied by `kb setup`.
 
 Mimir does not send documents to a hosted RAG service and does not generate final LLM answers in
 core. It returns cited retrieval context so the agent or model you trust can write from local
@@ -39,24 +39,23 @@ pnpm add -D @jcode.labs/mimir
 ## Quick Start
 
 ```bash
-pnpm exec kb init
-pnpm exec kb doctor
-pnpm exec kb ingest
+pnpm exec kb setup
 pnpm exec kb search "your question"
 pnpm exec kb ask "your question"
-pnpm exec kb install-skill
 ```
 
 By default, Mimir indexes documents from `private/`, stores generated state under `.kb/`, and keeps
-agent integration files under `.mimir/`. `kb init` adds the matching Git ignore entries for local
+agent integration files under `.mimir/`. `kb setup` adds the matching Git ignore entries for local
 generated and private data.
 
+Run `pnpm exec kb doctor --fix` later to repair missing setup or rebuild stale indexes.
+
 ## Entry Points
 
 - CLI: `kb`
 - Library import: `@jcode.labs/mimir`
 - MCP server: `pnpm exec kb serve-mcp`
-- Bundled skills: `pnpm exec kb install-skill`
+- Bundled skills: `pnpm exec kb setup` or `pnpm exec kb install-skill`
 
 ## License
 

package/dist/cli.js

@@ -7,8 +7,10 @@ import { doctor } from "./doctor.js";
 import { audit, ingest } from "./ingest.js";
 import { initProject } from "./init.js";
 import { serveMcp } from "./mcp.js";
+import { kbCommand } from "./package-manager.js";
 import { ask, search } from "./query.js";
 import { securityAudit } from "./security.js";
+import { setupProject } from "./setup.js";
 import { bundledSkillPath, installSkill } from "./skill.js";
 import { countRows } from "./store.js";
 import { VERSION } from "./version.js";
@@ -22,8 +24,18 @@ program
 program
     .command("doctor")
     .description("Diagnose setup, index freshness, privacy posture, and next steps.")
+    .option("--fix", "Create missing scaffolding, install the agent kit, and rebuild stale indexes.")
     .option("--json", "Print machine-readable JSON.")
     .action(async (options) => {
+    if (options.fix) {
+        const result = await setupProject({ cwd: process.cwd() });
+        if (options.json) {
+            console.log(JSON.stringify(result, null, 2));
+            return;
+        }
+        printSetup(result, "Mimir repair complete.");
+        return;
+    }
     const report = await doctor(process.cwd());
     if (options.json) {
         console.log(JSON.stringify(report, null, 2));
@@ -31,6 +43,25 @@ program
     }
     printDoctor(report);
 });
+program
+    .command("setup")
+    .description("Initialize Mimir, install the agent kit, run doctor, and ingest when safe.")
+    .option("--target-dir <path>", "Directory where the skill folder should be copied.", ".mimir/skills")
+    .option("--no-ingest", "Skip automatic indexing even when supported files are present.")
+    .option("--json", "Print machine-readable JSON.")
+    .action(async (options) => {
+    const setupOptions = {
+        cwd: process.cwd(),
+        targetDir: options.targetDir,
+    };
+    addOption(setupOptions, "ingest", options.ingest);
+    const result = await setupProject(setupOptions);
+    if (options.json) {
+        console.log(JSON.stringify(result, null, 2));
+        return;
+    }
+    printSetup(result, "Mimir setup complete.");
+});
 program
     .command("init")
     .description("Create .kb config files and private/ document folder in the current repository.")
@@ -38,18 +69,23 @@ program
     const created = await initProject(process.cwd());
     if (created.length === 0) {
         console.log(pc.green("Already initialized."));
+        const doctorCommand = await kbCommand(process.cwd(), ["doctor"]);
+        console.log(`Run \`${doctorCommand.display}\` to check readiness.`);
         return;
     }
     console.log(pc.green("Created:"));
     for (const file of created) {
         console.log(`  - ${file}`);
     }
+    const ingestCommand = await kbCommand(process.cwd(), ["ingest"]);
+    const doctorCommand = await kbCommand(process.cwd(), ["doctor"]);
+    const searchCommand = await kbCommand(process.cwd(), ["search", "your question"]);
     console.log("");
     console.log(pc.cyan("Next steps:"));
     console.log("  1. Add supported documents under private/");
-    console.log("  2. Run `pnpm exec kb ingest`");
-    console.log("  3. Run `pnpm exec kb doctor`");
-    console.log('  4. Query with `pnpm exec kb search "your question"`');
+    console.log(`  2. Run \`${ingestCommand.display}\``);
+    console.log(`  3. Run \`${doctorCommand.display}\``);
+    console.log(`  4. Query with \`${searchCommand.display}\``);
 });
 program
     .command("ingest")
@@ -73,7 +109,8 @@ program
     .action(async (query, options) => {
     const results = await search(query, withTopK(options.topK));
     if (results.length === 0) {
-        console.error(pc.yellow("No results. Run `kb ingest` first, or add documents."));
+        const repairCommand = await kbCommand(process.cwd(), ["doctor", "--fix"]);
+        console.error(pc.yellow(`No results. Add documents or run \`${repairCommand.display}\`.`));
         process.exitCode = 1;
         return;
     }
@@ -248,6 +285,7 @@ program
     .option("--target-dir <path>", "Directory where the skill folder should be copied.", ".mimir/skills")
     .action(async (options) => {
     const result = await installSkill({ cwd: process.cwd(), targetDir: options.targetDir });
+    const doctorCommand = await kbCommand(process.cwd(), ["doctor"]);
     console.log("Installed Mimir agent kit:");
     for (const file of result.written) {
         console.log(`  - ${file}`);
@@ -259,7 +297,7 @@ program
     console.log("Next steps:");
     console.log("  1. Add the MCP config from .mimir/mcp.json to your agent if it supports MCP.");
     console.log("  2. Load .mimir/skills/mimir/ in agents that support skill folders.");
-    console.log("  3. Run `pnpm exec kb doctor` before relying on retrieved context.");
+    console.log(`  3. Run \`${doctorCommand.display}\` before relying on retrieved context.`);
 });
 try {
     await program.parseAsync(process.argv);
@@ -328,6 +366,9 @@ function printDoctor(report) {
     console.log(`projectRoot=${report.projectRoot}`);
     console.log(`initialized=${report.initialized}`);
     console.log(`ready=${report.ready}`);
+    console.log(`packageManager=${report.packageManager}`);
+    console.log(`runCommand=${report.runCommand}`);
+    console.log(`agentKitInstalled=${report.agentKitInstalled}`);
     console.log(`embeddingProvider=${report.embeddingProvider}`);
     console.log(`transformersAllowRemoteModels=${report.transformersAllowRemoteModels}`);
     console.log(`redactionEnabled=${report.redactionEnabled}`);
@@ -348,6 +389,37 @@ function printDoctor(report) {
         console.log(`  - ${step}`);
     }
 }
+function printSetup(result, title) {
+    console.log(pc.green(title));
+    console.log(`projectRoot=${result.projectRoot}`);
+    console.log(`packageManager=${result.packageManager}`);
+    console.log(`runCommand=${result.runCommand}`);
+    console.log("");
+    console.log(pc.cyan("Scaffolding:"));
+    if (result.created.length === 0) {
+        console.log("  - already initialized");
+    }
+    else {
+        for (const file of result.created) {
+            console.log(`  - ${file}`);
+        }
+    }
+    console.log("");
+    console.log(pc.cyan("Agent integration:"));
+    console.log(`  - skill: ${result.agentKit.skillPath}`);
+    console.log(`  - audio skill: ${result.agentKit.audioSkillPath}`);
+    console.log(`  - MCP config: ${result.agentKit.mcpConfigPath}`);
+    console.log("");
+    console.log(pc.cyan("Index:"));
+    if (result.ingested) {
+        console.log(`  - ingested indexedFiles=${result.ingested.indexedFiles} chunks=${result.ingested.chunks} errors=${result.ingested.errors.length}`);
+    }
+    else {
+        console.log("  - skipped; add supported files or run doctor --fix when ready");
+    }
+    console.log("");
+    printDoctor(result.doctor);
+}
 function printMaybeJson(value, json) {
     if (json) {
         console.log(JSON.stringify(value, null, 2));

package/dist/cli.js.map

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package/dist/doctor.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../src/doctor.ts"],"names":[],"mappings":"AAOA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAE9C,wBAAsB,MAAM,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,YAAY,CAAC,CA0CvE"}
+{"version":3,"file":"doctor.d.ts","sourceRoot":"","sources":["../src/doctor.ts"],"names":[],"mappings":"AAQA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAE9C,wBAAsB,MAAM,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,YAAY,CAAC,CAiDvE"}

package/dist/doctor.js

@@ -1,14 +1,17 @@
 import { existsSync } from "node:fs";
 import path from "node:path";
 import { findProjectRoot, loadConfig } from "./config.js";
-import { CONFIG_PATH } from "./defaults.js";
+import { CONFIG_PATH, MIMIR_DIR } from "./defaults.js";
 import { audit } from "./ingest.js";
+import { kbCommand } from "./package-manager.js";
 import { securityAudit } from "./security.js";
 import { countRows } from "./store.js";
 export async function doctor(cwd = process.cwd()) {
     const projectRoot = findProjectRoot(cwd);
     const initialized = existsSync(path.join(projectRoot, CONFIG_PATH));
     const config = await loadConfig(cwd);
+    const command = await kbCommand(projectRoot, []);
+    const agentKitInstalled = isAgentKitInstalled(projectRoot);
     const [auditReport, securityReport, chunksIndexed] = await Promise.all([
         audit(projectRoot),
         securityAudit(projectRoot),
@@ -21,10 +24,15 @@ export async function doctor(cwd = process.cwd()) {
         missingFromIndex: auditReport.missingFromIndex.length,
         staleInIndex: auditReport.staleInIndex.length,
         warnings: securityReport.warnings.length,
+        agentKitInstalled,
+        run: (args) => command.display + (args.length > 0 ? ` ${args.join(" ")}` : ""),
     });
     return {
         projectRoot: config.projectRoot,
         initialized,
+        packageManager: command.packageManager,
+        runCommand: command.display,
+        agentKitInstalled,
         rawDir: config.rawDir,
         storageDir: config.storageDir,
         embeddingProvider: config.embeddingProvider,
@@ -48,7 +56,7 @@ export async function doctor(cwd = process.cwd()) {
 function nextActions(input) {
     const steps = [];
     if (!input.initialized) {
-        steps.push("Run `pnpm exec kb init` to create .kb/config.json and private/.");
+        steps.push(`Run \`${input.run(["setup"])}\` to initialize Mimir and install the agent kit.`);
         return steps;
     }
     if (input.supportedFiles === 0) {
@@ -56,17 +64,27 @@ function nextActions(input) {
         return steps;
     }
     if (input.chunksIndexed === 0 || input.missingFromIndex > 0 || input.staleInIndex > 0) {
-        steps.push("Run `pnpm exec kb ingest` to rebuild the local index.");
-        steps.push("Run `pnpm exec kb audit` to verify missingFromIndex=0 and staleInIndex=0.");
+        steps.push(`Run \`${input.run(["doctor", "--fix"])}\` to rebuild stale or missing index data.`);
+        steps.push(`Run \`${input.run(["audit"])}\` to verify missingFromIndex=0 and staleInIndex=0.`);
     }
     if (input.warnings > 0) {
-        steps.push("Run `pnpm exec kb security-audit --strict` and fix the reported warnings.");
+        steps.push(`Run \`${input.run(["security-audit", "--strict"])}\` and fix the reported warnings.`);
     }
     if (steps.length === 0) {
-        steps.push('Run `pnpm exec kb search "your question"` to retrieve source passages.');
-        steps.push('Run `pnpm exec kb ask "your question"` to produce cited retrieval context.');
-        steps.push("Run `pnpm exec kb install-skill` if an AI agent should use the local knowledge base.");
+        steps.push(`Run \`${input.run(["search", '"your question"'])}\` to retrieve source passages.`);
+        steps.push(`Run \`${input.run(["ask", '"your question"'])}\` to produce cited retrieval context.`);
+        if (input.agentKitInstalled) {
+            steps.push("Connect an AI with .mimir/mcp.json or load .mimir/skills/mimir/.");
+        }
+        else {
+            steps.push(`Run \`${input.run(["install-skill"])}\` if an AI agent should use the local knowledge base.`);
+        }
     }
     return steps;
 }
+function isAgentKitInstalled(projectRoot) {
+    return (existsSync(path.join(projectRoot, MIMIR_DIR, "skills", "mimir", "SKILL.md")) &&
+        existsSync(path.join(projectRoot, MIMIR_DIR, "skills", "mimir-audio-summary", "SKILL.md")) &&
+        existsSync(path.join(projectRoot, MIMIR_DIR, "mcp.json")));
+}
 //# sourceMappingURL=doctor.js.map

package/dist/doctor.js.map

@@ -1 +1 @@
-{"version":3,"file":"doctor.js","sourceRoot":"","sources":["../src/doctor.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAA;AACpC,OAAO,IAAI,MAAM,WAAW,CAAA;AAC5B,OAAO,EAAE,eAAe,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACzD,OAAO,EAAE,WAAW,EAAE,MAAM,eAAe,CAAA;AAC3C,OAAO,EAAE,KAAK,EAAE,MAAM,aAAa,CAAA;AACnC,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAC7C,OAAO,EAAE,SAAS,EAAE,MAAM,YAAY,CAAA;AAGtC,MAAM,CAAC,KAAK,UAAU,MAAM,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,EAAE;IAC9C,MAAM,WAAW,GAAG,eAAe,CAAC,GAAG,CAAC,CAAA;IACxC,MAAM,WAAW,GAAG,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC,CAAA;IACnE,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,GAAG,CAAC,CAAA;IACpC,MAAM,CAAC,WAAW,EAAE,cAAc,EAAE,aAAa,CAAC,GAAG,MAAM,OAAO,CAAC,GAAG,CAAC;QACrE,KAAK,CAAC,WAAW,CAAC;QAClB,aAAa,CAAC,WAAW,CAAC;QAC1B,SAAS,CAAC,MAAM,CAAC;KAClB,CAAC,CAAA;IAEF,MAAM,SAAS,GAAG,WAAW,CAAC;QAC5B,WAAW;QACX,cAAc,EAAE,WAAW,CAAC,cAAc,CAAC,MAAM;QACjD,aAAa;QACb,gBAAgB,EAAE,WAAW,CAAC,gBAAgB,CAAC,MAAM;QACrD,YAAY,EAAE,WAAW,CAAC,YAAY,CAAC,MAAM;QAC7C,QAAQ,EAAE,cAAc,CAAC,QAAQ,CAAC,MAAM;KACzC,CAAC,CAAA;IAEF,OAAO;QACL,WAAW,EAAE,MAAM,CAAC,WAAW;QAC/B,WAAW;QACX,MAAM,EAAE,MAAM,CAAC,MAAM;QACrB,UAAU,EAAE,MAAM,CAAC,UAAU;QAC7B,iBAAiB,EAAE,MAAM,CAAC,iBAAiB;QAC3C,6BAA6B,EAAE,MAAM,CAAC,6BAA6B;QACnE,gBAAgB,EAAE,MAAM,CAAC,SAAS,CAAC,OAAO;QAC1C,SAAS,EAAE,MAAM,CAAC,SAAS;QAC3B,cAAc,EAAE,WAAW,CAAC,cAAc,CAAC,MAAM;QACjD,YAAY,EAAE,WAAW,CAAC,YAAY,CAAC,MAAM;QAC7C,aAAa;QACb,gBAAgB,EAAE,WAAW,CAAC,gBAAgB,CAAC,MAAM;QACrD,YAAY,EAAE,WAAW,CAAC,YAAY,CAAC,MAAM;QAC7C,gBAAgB,EAAE,cAAc,CAAC,QAAQ;QACzC,KAAK,EACH,WAAW;YACX,aAAa,GAAG,CAAC;YACjB,WAAW,CAAC,gBAAgB,CAAC,MAAM,KAAK,CAAC;YACzC,WAAW,CAAC,YAAY,CAAC,MAAM,KAAK,CAAC;YACrC,cAAc,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;QACtC,SAAS;KACV,CAAA;AACH,CAAC;AAWD,SAAS,WAAW,CAAC,KAAsB;IACzC,MAAM,KAAK,GAAa,EAAE,CAAA;IAE1B,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC;QACvB,KAAK,CAAC,IAAI,CAAC,iEAAiE,CAAC,CAAA;QAC7E,OAAO,KAAK,CAAA;IACd,CAAC;IAED,IAAI,KAAK,CAAC,cAAc,KAAK,CAAC,EAAE,CAAC;QAC/B,KAAK,CAAC,IAAI,CAAC,mFAAmF,CAAC,CAAA;QAC/F,OAAO,KAAK,CAAA;IACd,CAAC;IAED,IAAI,KAAK,CAAC,aAAa,KAAK,CAAC,IAAI,KAAK,CAAC,gBAAgB,GAAG,CAAC,IAAI,KAAK,CAAC,YAAY,GAAG,CAAC,EAAE,CAAC;QACtF,KAAK,CAAC,IAAI,CAAC,uDAAuD,CAAC,CAAA;QACnE,KAAK,CAAC,IAAI,CAAC,2EAA2E,CAAC,CAAA;IACzF,CAAC;IAED,IAAI,KAAK,CAAC,QAAQ,GAAG,CAAC,EAAE,CAAC;QACvB,KAAK,CAAC,IAAI,CAAC,2EAA2E,CAAC,CAAA;IACzF,CAAC;IAED,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACvB,KAAK,CAAC,IAAI,CAAC,wEAAwE,CAAC,CAAA;QACpF,KAAK,CAAC,IAAI,CAAC,4EAA4E,CAAC,CAAA;QACxF,KAAK,CAAC,IAAI,CACR,sFAAsF,CACvF,CAAA;IACH,CAAC;IAED,OAAO,KAAK,CAAA;AACd,CAAC"}
+{"version":3,"file":"doctor.js","sourceRoot":"","sources":["../src/doctor.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAA;AACpC,OAAO,IAAI,MAAM,WAAW,CAAA;AAC5B,OAAO,EAAE,eAAe,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACzD,OAAO,EAAE,WAAW,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AACtD,OAAO,EAAE,KAAK,EAAE,MAAM,aAAa,CAAA;AACnC,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAA;AAChD,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAC7C,OAAO,EAAE,SAAS,EAAE,MAAM,YAAY,CAAA;AAGtC,MAAM,CAAC,KAAK,UAAU,MAAM,CAAC,GAAG,GAAG,OAAO,CAAC,GAAG,EAAE;IAC9C,MAAM,WAAW,GAAG,eAAe,CAAC,GAAG,CAAC,CAAA;IACxC,MAAM,WAAW,GAAG,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC,CAAA;IACnE,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,GAAG,CAAC,CAAA;IACpC,MAAM,OAAO,GAAG,MAAM,SAAS,CAAC,WAAW,EAAE,EAAE,CAAC,CAAA;IAChD,MAAM,iBAAiB,GAAG,mBAAmB,CAAC,WAAW,CAAC,CAAA;IAC1D,MAAM,CAAC,WAAW,EAAE,cAAc,EAAE,aAAa,CAAC,GAAG,MAAM,OAAO,CAAC,GAAG,CAAC;QACrE,KAAK,CAAC,WAAW,CAAC;QAClB,aAAa,CAAC,WAAW,CAAC;QAC1B,SAAS,CAAC,MAAM,CAAC;KAClB,CAAC,CAAA;IAEF,MAAM,SAAS,GAAG,WAAW,CAAC;QAC5B,WAAW;QACX,cAAc,EAAE,WAAW,CAAC,cAAc,CAAC,MAAM;QACjD,aAAa;QACb,gBAAgB,EAAE,WAAW,CAAC,gBAAgB,CAAC,MAAM;QACrD,YAAY,EAAE,WAAW,CAAC,YAAY,CAAC,MAAM;QAC7C,QAAQ,EAAE,cAAc,CAAC,QAAQ,CAAC,MAAM;QACxC,iBAAiB;QACjB,GAAG,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,OAAO,CAAC,OAAO,GAAG,CAAC,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;KAC/E,CAAC,CAAA;IAEF,OAAO;QACL,WAAW,EAAE,MAAM,CAAC,WAAW;QAC/B,WAAW;QACX,cAAc,EAAE,OAAO,CAAC,cAAc;QACtC,UAAU,EAAE,OAAO,CAAC,OAAO;QAC3B,iBAAiB;QACjB,MAAM,EAAE,MAAM,CAAC,MAAM;QACrB,UAAU,EAAE,MAAM,CAAC,UAAU;QAC7B,iBAAiB,EAAE,MAAM,CAAC,iBAAiB;QAC3C,6BAA6B,EAAE,MAAM,CAAC,6BAA6B;QACnE,gBAAgB,EAAE,MAAM,CAAC,SAAS,CAAC,OAAO;QAC1C,SAAS,EAAE,MAAM,CAAC,SAAS;QAC3B,cAAc,EAAE,WAAW,CAAC,cAAc,CAAC,MAAM;QACjD,YAAY,EAAE,WAAW,CAAC,YAAY,CAAC,MAAM;QAC7C,aAAa;QACb,gBAAgB,EAAE,WAAW,CAAC,gBAAgB,CAAC,MAAM;QACrD,YAAY,EAAE,WAAW,CAAC,YAAY,CAAC,MAAM;QAC7C,gBAAgB,EAAE,cAAc,CAAC,QAAQ;QACzC,KAAK,EACH,WAAW;YACX,aAAa,GAAG,CAAC;YACjB,WAAW,CAAC,gBAAgB,CAAC,MAAM,KAAK,CAAC;YACzC,WAAW,CAAC,YAAY,CAAC,MAAM,KAAK,CAAC;YACrC,cAAc,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;QACtC,SAAS;KACV,CAAA;AACH,CAAC;AAaD,SAAS,WAAW,CAAC,KAAsB;IACzC,MAAM,KAAK,GAAa,EAAE,CAAA;IAE1B,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC;QACvB,KAAK,CAAC,IAAI,CAAC,SAAS,KAAK,CAAC,GAAG,CAAC,CAAC,OAAO,CAAC,CAAC,mDAAmD,CAAC,CAAA;QAC5F,OAAO,KAAK,CAAA;IACd,CAAC;IAED,IAAI,KAAK,CAAC,cAAc,KAAK,CAAC,EAAE,CAAC;QAC/B,KAAK,CAAC,IAAI,CAAC,mFAAmF,CAAC,CAAA;QAC/F,OAAO,KAAK,CAAA;IACd,CAAC;IAED,IAAI,KAAK,CAAC,aAAa,KAAK,CAAC,IAAI,KAAK,CAAC,gBAAgB,GAAG,CAAC,IAAI,KAAK,CAAC,YAAY,GAAG,CAAC,EAAE,CAAC;QACtF,KAAK,CAAC,IAAI,CAAC,SAAS,KAAK,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC,4CAA4C,CAAC,CAAA;QAC/F,KAAK,CAAC,IAAI,CAAC,SAAS,KAAK,CAAC,GAAG,CAAC,CAAC,OAAO,CAAC,CAAC,qDAAqD,CAAC,CAAA;IAChG,CAAC;IAED,IAAI,KAAK,CAAC,QAAQ,GAAG,CAAC,EAAE,CAAC;QACvB,KAAK,CAAC,IAAI,CACR,SAAS,KAAK,CAAC,GAAG,CAAC,CAAC,gBAAgB,EAAE,UAAU,CAAC,CAAC,mCAAmC,CACtF,CAAA;IACH,CAAC;IAED,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACvB,KAAK,CAAC,IAAI,CAAC,SAAS,KAAK,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,iBAAiB,CAAC,CAAC,iCAAiC,CAAC,CAAA;QAC9F,KAAK,CAAC,IAAI,CACR,SAAS,KAAK,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,iBAAiB,CAAC,CAAC,wCAAwC,CACvF,CAAA;QACD,IAAI,KAAK,CAAC,iBAAiB,EAAE,CAAC;YAC5B,KAAK,CAAC,IAAI,CAAC,kEAAkE,CAAC,CAAA;QAChF,CAAC;aAAM,CAAC;YACN,KAAK,CAAC,IAAI,CACR,SAAS,KAAK,CAAC,GAAG,CAAC,CAAC,eAAe,CAAC,CAAC,wDAAwD,CAC9F,CAAA;QACH,CAAC;IACH,CAAC;IAED,OAAO,KAAK,CAAA;AACd,CAAC;AAED,SAAS,mBAAmB,CAAC,WAAmB;IAC9C,OAAO,CACL,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,SAAS,EAAE,QAAQ,EAAE,OAAO,EAAE,UAAU,CAAC,CAAC;QAC5E,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,SAAS,EAAE,QAAQ,EAAE,qBAAqB,EAAE,UAAU,CAAC,CAAC;QAC1F,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,SAAS,EAAE,UAAU,CAAC,CAAC,CAC1D,CAAA;AACH,CAAC"}

package/dist/index.d.ts

@@ -4,9 +4,13 @@ export { doctor } from "./doctor.js";
 export { audit, ingest } from "./ingest.js";
 export { initProject } from "./init.js";
 export { serveMcp } from "./mcp.js";
+export type { PackageManager } from "./package-manager.js";
+export { detectPackageManager, kbCommand } from "./package-manager.js";
 export { ask, search } from "./query.js";
 export { redactText } from "./redaction.js";
 export { securityAudit } from "./security.js";
+export type { SetupResult } from "./setup.js";
+export { setupProject } from "./setup.js";
 export { bundledSkillPath, installSkill } from "./skill.js";
 export type { AskResult, AuditReport, Config, DestroyIndexResult, DoctorReport, IngestResult, SearchResult, SecurityAuditReport, } from "./types.js";
 export { VERSION } from "./version.js";

package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACxC,OAAO,EAAE,YAAY,EAAE,MAAM,cAAc,CAAA;AAC3C,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AACpC,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AAC3C,OAAO,EAAE,WAAW,EAAE,MAAM,WAAW,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,UAAU,CAAA;AACnC,OAAO,EAAE,GAAG,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AACxC,OAAO,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAA;AAC3C,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAC7C,OAAO,EAAE,gBAAgB,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAC3D,YAAY,EACV,SAAS,EACT,WAAW,EACX,MAAM,EACN,kBAAkB,EAClB,YAAY,EACZ,YAAY,EACZ,YAAY,EACZ,mBAAmB,GACpB,MAAM,YAAY,CAAA;AACnB,OAAO,EAAE,OAAO,EAAE,MAAM,cAAc,CAAA"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACxC,OAAO,EAAE,YAAY,EAAE,MAAM,cAAc,CAAA;AAC3C,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AACpC,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AAC3C,OAAO,EAAE,WAAW,EAAE,MAAM,WAAW,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,UAAU,CAAA;AACnC,YAAY,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAA;AAC1D,OAAO,EAAE,oBAAoB,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAA;AACtE,OAAO,EAAE,GAAG,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AACxC,OAAO,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAA;AAC3C,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAC7C,YAAY,EAAE,WAAW,EAAE,MAAM,YAAY,CAAA;AAC7C,OAAO,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AACzC,OAAO,EAAE,gBAAgB,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAC3D,YAAY,EACV,SAAS,EACT,WAAW,EACX,MAAM,EACN,kBAAkB,EAClB,YAAY,EACZ,YAAY,EACZ,YAAY,EACZ,mBAAmB,GACpB,MAAM,YAAY,CAAA;AACnB,OAAO,EAAE,OAAO,EAAE,MAAM,cAAc,CAAA"}

package/dist/index.js

@@ -4,9 +4,11 @@ export { doctor } from "./doctor.js";
 export { audit, ingest } from "./ingest.js";
 export { initProject } from "./init.js";
 export { serveMcp } from "./mcp.js";
+export { detectPackageManager, kbCommand } from "./package-manager.js";
 export { ask, search } from "./query.js";
 export { redactText } from "./redaction.js";
 export { securityAudit } from "./security.js";
+export { setupProject } from "./setup.js";
 export { bundledSkillPath, installSkill } from "./skill.js";
 export { VERSION } from "./version.js";
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACxC,OAAO,EAAE,YAAY,EAAE,MAAM,cAAc,CAAA;AAC3C,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AACpC,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AAC3C,OAAO,EAAE,WAAW,EAAE,MAAM,WAAW,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,UAAU,CAAA;AACnC,OAAO,EAAE,GAAG,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AACxC,OAAO,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAA;AAC3C,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAC7C,OAAO,EAAE,gBAAgB,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAW3D,OAAO,EAAE,OAAO,EAAE,MAAM,cAAc,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACxC,OAAO,EAAE,YAAY,EAAE,MAAM,cAAc,CAAA;AAC3C,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AACpC,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AAC3C,OAAO,EAAE,WAAW,EAAE,MAAM,WAAW,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,UAAU,CAAA;AAEnC,OAAO,EAAE,oBAAoB,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAA;AACtE,OAAO,EAAE,GAAG,EAAE,MAAM,EAAE,MAAM,YAAY,CAAA;AACxC,OAAO,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAA;AAC3C,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAA;AAE7C,OAAO,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AACzC,OAAO,EAAE,gBAAgB,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAW3D,OAAO,EAAE,OAAO,EAAE,MAAM,cAAc,CAAA"}

package/dist/package-manager.d.ts

@@ -0,0 +1,10 @@
+export type PackageManager = "pnpm" | "npm" | "yarn" | "bun";
+export interface KbCommand {
+    packageManager: PackageManager;
+    command: string;
+    args: string[];
+    display: string;
+}
+export declare function detectPackageManager(cwd?: string): Promise<PackageManager>;
+export declare function kbCommand(cwd: string, args: string[]): Promise<KbCommand>;
+//# sourceMappingURL=package-manager.d.ts.map

package/dist/package-manager.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"package-manager.d.ts","sourceRoot":"","sources":["../src/package-manager.ts"],"names":[],"mappings":"AAIA,MAAM,MAAM,cAAc,GAAG,MAAM,GAAG,KAAK,GAAG,MAAM,GAAG,KAAK,CAAA;AAE5D,MAAM,WAAW,SAAS;IACxB,cAAc,EAAE,cAAc,CAAA;IAC9B,OAAO,EAAE,MAAM,CAAA;IACf,IAAI,EAAE,MAAM,EAAE,CAAA;IACd,OAAO,EAAE,MAAM,CAAA;CAChB;AAED,wBAAsB,oBAAoB,CAAC,GAAG,SAAgB,GAAG,OAAO,CAAC,cAAc,CAAC,CAsBvF;AAED,wBAAsB,SAAS,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,SAAS,CAAC,CAS/E"}

package/dist/package-manager.js

@@ -0,0 +1,91 @@
+import { existsSync } from "node:fs";
+import { readFile } from "node:fs/promises";
+import path from "node:path";
+export async function detectPackageManager(cwd = process.cwd()) {
+    const root = path.resolve(cwd);
+    const packageManager = await packageJsonManager(root);
+    if (packageManager) {
+        return packageManager;
+    }
+    if (existsSync(path.join(root, "pnpm-lock.yaml"))) {
+        return "pnpm";
+    }
+    if (existsSync(path.join(root, "package-lock.json")) ||
+        existsSync(path.join(root, "npm-shrinkwrap.json"))) {
+        return "npm";
+    }
+    if (existsSync(path.join(root, "yarn.lock"))) {
+        return "yarn";
+    }
+    if (existsSync(path.join(root, "bun.lock")) || existsSync(path.join(root, "bun.lockb"))) {
+        return "bun";
+    }
+    return "pnpm";
+}
+export async function kbCommand(cwd, args) {
+    const packageManager = await detectPackageManager(cwd);
+    const commandArgs = commandArgsFor(packageManager, args);
+    return {
+        packageManager,
+        command: commandArgs.command,
+        args: commandArgs.args,
+        display: displayCommand(packageManager, args),
+    };
+}
+async function packageJsonManager(root) {
+    const packageJsonPath = path.join(root, "package.json");
+    if (!existsSync(packageJsonPath)) {
+        return null;
+    }
+    try {
+        const packageJson = JSON.parse(await readFile(packageJsonPath, "utf8"));
+        if (typeof packageJson.packageManager !== "string") {
+            return null;
+        }
+        if (packageJson.packageManager.startsWith("pnpm@")) {
+            return "pnpm";
+        }
+        if (packageJson.packageManager.startsWith("npm@")) {
+            return "npm";
+        }
+        if (packageJson.packageManager.startsWith("yarn@")) {
+            return "yarn";
+        }
+        if (packageJson.packageManager.startsWith("bun@")) {
+            return "bun";
+        }
+    }
+    catch {
+        return null;
+    }
+    return null;
+}
+function commandArgsFor(packageManager, args) {
+    switch (packageManager) {
+        case "npm":
+            return { command: "npx", args: ["kb", ...args] };
+        case "yarn":
+            return { command: "yarn", args: ["exec", "kb", ...args] };
+        case "bun":
+            return { command: "bunx", args: ["kb", ...args] };
+        case "pnpm":
+            return { command: "pnpm", args: ["exec", "kb", ...args] };
+    }
+}
+function displayCommand(packageManager, args) {
+    const suffix = args.map(formatArg).join(" ");
+    switch (packageManager) {
+        case "npm":
+            return `npx kb${suffix ? ` ${suffix}` : ""}`;
+        case "yarn":
+            return `yarn exec kb${suffix ? ` ${suffix}` : ""}`;
+        case "bun":
+            return `bunx kb${suffix ? ` ${suffix}` : ""}`;
+        case "pnpm":
+            return `pnpm exec kb${suffix ? ` ${suffix}` : ""}`;
+    }
+}
+function formatArg(arg) {
+    return /\s/.test(arg) ? JSON.stringify(arg) : arg;
+}
+//# sourceMappingURL=package-manager.js.map

package/dist/package-manager.js.map

@@ -0,0 +1 @@
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package/dist/query.js

@@ -33,7 +33,7 @@ export async function ask(query, options = {}) {
     const sources = await search(query, options);
     if (sources.length === 0) {
         return {
-            answer: "No relevant passages were found. Add documents and run `kb ingest` first.",
+            answer: "No relevant passages were found. Add documents and run `kb doctor --fix` first.",
             sources,
         };
     }

package/dist/query.js.map

@@ -1 +1 @@
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+{"version":3,"file":"query.js","sourceRoot":"","sources":["../src/query.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,MAAM,iBAAiB,CAAA;AAC9C,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AACxC,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAA;AAC3C,OAAO,EAAE,aAAa,EAAE,MAAM,YAAY,CAAA;AAW1C,MAAM,CAAC,KAAK,UAAU,MAAM,CAAC,KAAa,EAAE,UAAyB,EAAE;IACrE,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC,CAAC,CAAA;IACrE,MAAM,KAAK,GAAG,MAAM,aAAa,CAAC,MAAM,CAAC,CAAA;IACzC,IAAI,CAAC,KAAK,EAAE,CAAC;QACX,OAAO,EAAE,CAAA;IACX,CAAC;IAED,MAAM,MAAM,GAAG,MAAM,SAAS,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;IAC7C,MAAM,IAAI,GAAG,CAAC,MAAM,KAAK;SACtB,YAAY,CAAC,MAAM,CAAC;SACpB,KAAK,CAAC,OAAO,CAAC,IAAI,IAAI,MAAM,CAAC,IAAI,CAAC;SAClC,OAAO,EAAE,CAAgB,CAAA;IAE5B,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,CAAC;QACjC,MAAM,EAAE,GAAG,CAAC,MAAM;QAClB,YAAY,EAAE,GAAG,CAAC,YAAY;QAC9B,UAAU,EAAE,GAAG,CAAC,UAAU;QAC1B,IAAI,EAAE,GAAG,CAAC,IAAI;QACd,QAAQ,EAAE,OAAO,GAAG,CAAC,SAAS,KAAK,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI;KACnE,CAAC,CAAC,CAAA;IACH,MAAM,YAAY,CAAC,MAAM,EAAE;QACzB,MAAM,EAAE,QAAQ;QAChB,KAAK;QACL,IAAI,EAAE,OAAO,CAAC,IAAI,IAAI,MAAM,CAAC,IAAI;QACjC,WAAW,EAAE,OAAO,CAAC,MAAM;KAC5B,CAAC,CAAA;IACF,OAAO,OAAO,CAAA;AAChB,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,GAAG,CAAC,KAAa,EAAE,UAAyB,EAAE;IAClE,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC,CAAC,CAAA;IACrE,MAAM,OAAO,GAAG,MAAM,MAAM,CAAC,KAAK,EAAE,OAAO,CAAC,CAAA;IAE5C,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACzB,OAAO;YACL,MAAM,EAAE,iFAAiF;YACzF,OAAO;SACR,CAAA;IACH,CAAC;IAED,MAAM,YAAY,CAAC,MAAM,EAAE;QACzB,MAAM,EAAE,KAAK;QACb,KAAK;QACL,IAAI,EAAE,OAAO,CAAC,IAAI,IAAI,MAAM,CAAC,IAAI;QACjC,WAAW,EAAE,OAAO,CAAC,MAAM;KAC5B,CAAC,CAAA;IAEF,OAAO;QACL,MAAM,EAAE,mBAAmB,CAAC,OAAO,CAAC;QACpC,OAAO;KACR,CAAA;AACH,CAAC;AAED,SAAS,mBAAmB,CAAC,OAAuB;IAClD,MAAM,QAAQ,GAAG,OAAO;SACrB,GAAG,CAAC,CAAC,MAAM,EAAE,KAAK,EAAE,EAAE;QACrB,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,OAAO,EAAE,GAAG,CAAC,CAAC,IAAI,EAAE,CAAA;QACrD,OAAO,IAAI,KAAK,GAAG,CAAC,KAAK,MAAM,CAAC,YAAY,IAAI,MAAM,CAAC,UAAU,KAAK,IAAI,EAAE,CAAA;IAC9E,CAAC,CAAC;SACD,IAAI,CAAC,MAAM,CAAC,CAAA;IAEf,OAAO;QACL,qGAAqG;QACrG,EAAE;QACF,QAAQ;KACT,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;AACd,CAAC"}

package/dist/setup.d.ts

@@ -0,0 +1,20 @@
+import { type PackageManager } from "./package-manager.js";
+import { type InstallSkillResult } from "./skill.js";
+import type { DoctorReport, IngestResult } from "./types.js";
+export interface SetupOptions {
+    cwd?: string;
+    targetDir?: string;
+    ingest?: boolean;
+}
+export interface SetupResult {
+    projectRoot: string;
+    packageManager: PackageManager;
+    runCommand: string;
+    created: string[];
+    agentKit: InstallSkillResult;
+    ingested: IngestResult | null;
+    doctor: DoctorReport;
+    nextSteps: string[];
+}
+export declare function setupProject(options?: SetupOptions): Promise<SetupResult>;
+//# sourceMappingURL=setup.d.ts.map

package/dist/setup.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"setup.d.ts","sourceRoot":"","sources":["../src/setup.ts"],"names":[],"mappings":"AAIA,OAAO,EAAa,KAAK,cAAc,EAAE,MAAM,sBAAsB,CAAA;AACrE,OAAO,EAAE,KAAK,kBAAkB,EAAgB,MAAM,YAAY,CAAA;AAClE,OAAO,KAAK,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,YAAY,CAAA;AAE5D,MAAM,WAAW,YAAY;IAC3B,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,SAAS,CAAC,EAAE,MAAM,CAAA;IAClB,MAAM,CAAC,EAAE,OAAO,CAAA;CACjB;AAED,MAAM,WAAW,WAAW;IAC1B,WAAW,EAAE,MAAM,CAAA;IACnB,cAAc,EAAE,cAAc,CAAA;IAC9B,UAAU,EAAE,MAAM,CAAA;IAClB,OAAO,EAAE,MAAM,EAAE,CAAA;IACjB,QAAQ,EAAE,kBAAkB,CAAA;IAC5B,QAAQ,EAAE,YAAY,GAAG,IAAI,CAAA;IAC7B,MAAM,EAAE,YAAY,CAAA;IACpB,SAAS,EAAE,MAAM,EAAE,CAAA;CACpB;AAED,wBAAsB,YAAY,CAAC,OAAO,GAAE,YAAiB,GAAG,OAAO,CAAC,WAAW,CAAC,CA4BnF"}

package/dist/setup.js

@@ -0,0 +1,47 @@
+import path from "node:path";
+import { doctor } from "./doctor.js";
+import { ingest } from "./ingest.js";
+import { initProject } from "./init.js";
+import { kbCommand } from "./package-manager.js";
+import { installSkill } from "./skill.js";
+export async function setupProject(options = {}) {
+    const cwd = path.resolve(options.cwd ?? process.cwd());
+    const created = await initProject(cwd);
+    const installOptions = { cwd };
+    if (options.targetDir !== undefined) {
+        installOptions.targetDir = options.targetDir;
+    }
+    const agentKit = await installSkill(installOptions);
+    let report = await doctor(cwd);
+    let ingested = null;
+    if (options.ingest !== false && canAutoIngest(report)) {
+        ingested = await ingest({ cwd, rebuild: true });
+        report = await doctor(cwd);
+    }
+    const command = await kbCommand(cwd, ["doctor"]);
+    return {
+        projectRoot: report.projectRoot,
+        packageManager: command.packageManager,
+        runCommand: command.display,
+        created,
+        agentKit,
+        ingested,
+        doctor: report,
+        nextSteps: setupNextSteps(report),
+    };
+}
+function canAutoIngest(report) {
+    return (report.supportedFiles > 0 &&
+        report.securityWarnings.length === 0 &&
+        (report.chunksIndexed === 0 || report.missingFromIndex > 0 || report.staleInIndex > 0));
+}
+function setupNextSteps(report) {
+    if (report.ready) {
+        return [
+            "Ask questions with the search or ask command shown by `kb doctor`.",
+            "Connect an AI with .mimir/mcp.json or load .mimir/skills/mimir/.",
+        ];
+    }
+    return report.nextSteps;
+}
+//# sourceMappingURL=setup.js.map

package/dist/setup.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"setup.js","sourceRoot":"","sources":["../src/setup.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAA;AAC5B,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AACpC,OAAO,EAAE,MAAM,EAAE,MAAM,aAAa,CAAA;AACpC,OAAO,EAAE,WAAW,EAAE,MAAM,WAAW,CAAA;AACvC,OAAO,EAAE,SAAS,EAAuB,MAAM,sBAAsB,CAAA;AACrE,OAAO,EAA2B,YAAY,EAAE,MAAM,YAAY,CAAA;AAoBlE,MAAM,CAAC,KAAK,UAAU,YAAY,CAAC,UAAwB,EAAE;IAC3D,MAAM,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC,CAAA;IACtD,MAAM,OAAO,GAAG,MAAM,WAAW,CAAC,GAAG,CAAC,CAAA;IACtC,MAAM,cAAc,GAAuC,EAAE,GAAG,EAAE,CAAA;IAClE,IAAI,OAAO,CAAC,SAAS,KAAK,SAAS,EAAE,CAAC;QACpC,cAAc,CAAC,SAAS,GAAG,OAAO,CAAC,SAAS,CAAA;IAC9C,CAAC;IACD,MAAM,QAAQ,GAAG,MAAM,YAAY,CAAC,cAAc,CAAC,CAAA;IACnD,IAAI,MAAM,GAAG,MAAM,MAAM,CAAC,GAAG,CAAC,CAAA;IAC9B,IAAI,QAAQ,GAAwB,IAAI,CAAA;IAExC,IAAI,OAAO,CAAC,MAAM,KAAK,KAAK,IAAI,aAAa,CAAC,MAAM,CAAC,EAAE,CAAC;QACtD,QAAQ,GAAG,MAAM,MAAM,CAAC,EAAE,GAAG,EAAE,OAAO,EAAE,IAAI,EAAE,CAAC,CAAA;QAC/C,MAAM,GAAG,MAAM,MAAM,CAAC,GAAG,CAAC,CAAA;IAC5B,CAAC;IAED,MAAM,OAAO,GAAG,MAAM,SAAS,CAAC,GAAG,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAA;IAEhD,OAAO;QACL,WAAW,EAAE,MAAM,CAAC,WAAW;QAC/B,cAAc,EAAE,OAAO,CAAC,cAAc;QACtC,UAAU,EAAE,OAAO,CAAC,OAAO;QAC3B,OAAO;QACP,QAAQ;QACR,QAAQ;QACR,MAAM,EAAE,MAAM;QACd,SAAS,EAAE,cAAc,CAAC,MAAM,CAAC;KAClC,CAAA;AACH,CAAC;AAED,SAAS,aAAa,CAAC,MAAoB;IACzC,OAAO,CACL,MAAM,CAAC,cAAc,GAAG,CAAC;QACzB,MAAM,CAAC,gBAAgB,CAAC,MAAM,KAAK,CAAC;QACpC,CAAC,MAAM,CAAC,aAAa,KAAK,CAAC,IAAI,MAAM,CAAC,gBAAgB,GAAG,CAAC,IAAI,MAAM,CAAC,YAAY,GAAG,CAAC,CAAC,CACvF,CAAA;AACH,CAAC;AAED,SAAS,cAAc,CAAC,MAAoB;IAC1C,IAAI,MAAM,CAAC,KAAK,EAAE,CAAC;QACjB,OAAO;YACL,oEAAoE;YACpE,kEAAkE;SACnE,CAAA;IACH,CAAC;IACD,OAAO,MAAM,CAAC,SAAS,CAAA;AACzB,CAAC"}

package/dist/skill.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"skill.d.ts","sourceRoot":"","sources":["../src/skill.ts"],"names":[],"mappings":"AAMA,MAAM,WAAW,mBAAmB;IAClC,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,SAAS,CAAC,EAAE,MAAM,CAAA;CACnB;AAED,MAAM,WAAW,kBAAkB;IACjC,SAAS,EAAE,MAAM,CAAA;IACjB,cAAc,EAAE,MAAM,CAAA;IACtB,aAAa,EAAE,MAAM,CAAA;IACrB,UAAU,EAAE,MAAM,CAAA;IAClB,OAAO,EAAE,MAAM,EAAE,CAAA;CAClB;AAMD,wBAAgB,gBAAgB,CAAC,SAAS,SAAqB,GAAG,MAAM,CAEvE;AAED,wBAAsB,YAAY,CAAC,OAAO,GAAE,mBAAwB,GAAG,OAAO,CAAC,kBAAkB,CAAC,CAoCjG"}
+{"version":3,"file":"skill.d.ts","sourceRoot":"","sources":["../src/skill.ts"],"names":[],"mappings":"AAOA,MAAM,WAAW,mBAAmB;IAClC,GAAG,CAAC,EAAE,MAAM,CAAA;IACZ,SAAS,CAAC,EAAE,MAAM,CAAA;CACnB;AAED,MAAM,WAAW,kBAAkB;IACjC,SAAS,EAAE,MAAM,CAAA;IACjB,cAAc,EAAE,MAAM,CAAA;IACtB,aAAa,EAAE,MAAM,CAAA;IACrB,UAAU,EAAE,MAAM,CAAA;IAClB,OAAO,EAAE,MAAM,EAAE,CAAA;CAClB;AAMD,wBAAgB,gBAAgB,CAAC,SAAS,SAAqB,GAAG,MAAM,CAEvE;AAED,wBAAsB,YAAY,CAAC,OAAO,GAAE,mBAAwB,GAAG,OAAO,CAAC,kBAAkB,CAAC,CAoDjG"}

package/dist/skill.js

@@ -3,6 +3,7 @@ import path from "node:path";
 import { fileURLToPath } from "node:url";
 import { DEFAULT_SKILL_TARGET_DIR, MIMIR_DIR } from "./defaults.js";
 import { ensureMimirGitignore } from "./gitignore.js";
+import { kbCommand } from "./package-manager.js";
 const PACKAGE_ROOT = path.dirname(path.dirname(fileURLToPath(import.meta.url)));
 const PRIMARY_SKILL_NAME = "mimir";
 const AUDIO_SKILL_NAME = "mimir-audio-summary";
@@ -21,8 +22,10 @@ export async function installSkill(options = {}) {
     await mkdir(mimirDir, { recursive: true });
     await cp(bundledSkillPath(PRIMARY_SKILL_NAME), skillPath, { recursive: true, force: true });
     await cp(bundledSkillPath(AUDIO_SKILL_NAME), audioSkillPath, { recursive: true, force: true });
-    await writeFile(mcpConfigPath, `${JSON.stringify(mcpConfig(cwd), null, 2)}\n`, "utf8");
-    await writeFile(readmePath, agentKitReadme(skillPath, audioSkillPath, mcpConfigPath), "utf8");
+    const serveCommand = await kbCommand(cwd, ["serve-mcp"]);
+    const doctorCommand = await kbCommand(cwd, ["doctor"]);
+    await writeFile(mcpConfigPath, `${JSON.stringify(mcpConfig(cwd, serveCommand), null, 2)}\n`, "utf8");
+    await writeFile(readmePath, agentKitReadme(skillPath, audioSkillPath, mcpConfigPath, serveCommand.display, doctorCommand.display), "utf8");
     const wroteGitignore = await ensureMimirGitignore(cwd);
     const written = [
         path.relative(cwd, skillPath),
@@ -41,18 +44,18 @@ export async function installSkill(options = {}) {
         written,
     };
 }
-function mcpConfig(cwd) {
+function mcpConfig(cwd, serveCommand) {
     return {
         mcpServers: {
             mimir: {
-                command: "pnpm",
-                args: ["exec", "kb", "serve-mcp"],
+                command: serveCommand.command,
+                args: serveCommand.args,
                 cwd,
             },
         },
     };
 }
-function agentKitReadme(skillPath, audioSkillPath, mcpConfigPath) {
+function agentKitReadme(skillPath, audioSkillPath, mcpConfigPath, serveCommand, doctorCommand) {
     return `# Mimir Agent Kit
 
 This folder contains portable agent instructions for Mimir.
@@ -88,13 +91,13 @@ ${mcpConfigPath}
 Use the MCP server when your agent supports MCP tools. The server command is:
 
 \`\`\`bash
-pnpm exec kb serve-mcp
+${serveCommand}
 \`\`\`
 
 Before relying on retrieved context, run:
 
 \`\`\`bash
-pnpm exec kb doctor
+${doctorCommand}
 \`\`\`
 
 `;

package/dist/skill.js.map

@@ -1 +1 @@
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+{"version":3,"file":"skill.js","sourceRoot":"","sources":["../src/skill.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,EAAE,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,kBAAkB,CAAA;AACvD,OAAO,IAAI,MAAM,WAAW,CAAA;AAC5B,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAA;AACxC,OAAO,EAAE,wBAAwB,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AACnE,OAAO,EAAE,oBAAoB,EAAE,MAAM,gBAAgB,CAAA;AACrD,OAAO,EAAE,SAAS,EAAE,MAAM,sBAAsB,CAAA;AAehD,MAAM,YAAY,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAA;AAC/E,MAAM,kBAAkB,GAAG,OAAO,CAAA;AAClC,MAAM,gBAAgB,GAAG,qBAAqB,CAAA;AAE9C,MAAM,UAAU,gBAAgB,CAAC,SAAS,GAAG,kBAAkB;IAC7D,OAAO,IAAI,CAAC,IAAI,CAAC,YAAY,EAAE,QAAQ,EAAE,SAAS,CAAC,CAAA;AACrD,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,YAAY,CAAC,UAA+B,EAAE;IAClE,MAAM,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC,CAAA;IACtD,MAAM,SAAS,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,EAAE,OAAO,CAAC,SAAS,IAAI,wBAAwB,CAAC,CAAA;IAClF,MAAM,SAAS,GAAG,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,kBAAkB,CAAC,CAAA;IAC1D,MAAM,cAAc,GAAG,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,gBAAgB,CAAC,CAAA;IAC7D,MAAM,QAAQ,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,EAAE,SAAS,CAAC,CAAA;IAC7C,MAAM,aAAa,GAAG,IAAI,CAAC,IAAI,CAAC,QAAQ,EAAE,UAAU,CAAC,CAAA;IACrD,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,CAAC,QAAQ,EAAE,WAAW,CAAC,CAAA;IAEnD,MAAM,KAAK,CAAC,SAAS,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAA;IAC3C,MAAM,KAAK,CAAC,QAAQ,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAA;IAC1C,MAAM,EAAE,CAAC,gBAAgB,CAAC,kBAAkB,CAAC,EAAE,SAAS,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAA;IAC3F,MAAM,EAAE,CAAC,gBAAgB,CAAC,gBAAgB,CAAC,EAAE,cAAc,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAA;IAE9F,MAAM,YAAY,GAAG,MAAM,SAAS,CAAC,GAAG,EAAE,CAAC,WAAW,CAAC,CAAC,CAAA;IACxD,MAAM,aAAa,GAAG,MAAM,SAAS,CAAC,GAAG,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAA;IACtD,MAAM,SAAS,CACb,aAAa,EACb,GAAG,IAAI,CAAC,SAAS,CAAC,SAAS,CAAC,GAAG,EAAE,YAAY,CAAC,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAC5D,MAAM,CACP,CAAA;IACD,MAAM,SAAS,CACb,UAAU,EACV,cAAc,CACZ,SAAS,EACT,cAAc,EACd,aAAa,EACb,YAAY,CAAC,OAAO,EACpB,aAAa,CAAC,OAAO,CACtB,EACD,MAAM,CACP,CAAA;IACD,MAAM,cAAc,GAAG,MAAM,oBAAoB,CAAC,GAAG,CAAC,CAAA;IAEtD,MAAM,OAAO,GAAG;QACd,IAAI,CAAC,QAAQ,CAAC,GAAG,EAAE,SAAS,CAAC;QAC7B,IAAI,CAAC,QAAQ,CAAC,GAAG,EAAE,cAAc,CAAC;QAClC,IAAI,CAAC,QAAQ,CAAC,GAAG,EAAE,aAAa,CAAC;QACjC,IAAI,CAAC,QAAQ,CAAC,GAAG,EAAE,UAAU,CAAC;KAC/B,CAAA;IAED,IAAI,cAAc,EAAE,CAAC;QACnB,OAAO,CAAC,IAAI,CAAC,YAAY,CAAC,CAAA;IAC5B,CAAC;IAED,OAAO;QACL,SAAS;QACT,cAAc;QACd,aAAa;QACb,UAAU;QACV,OAAO;KACR,CAAA;AACH,CAAC;AAED,SAAS,SAAS,CAAC,GAAW,EAAE,YAAmD;IACjF,OAAO;QACL,UAAU,EAAE;YACV,KAAK,EAAE;gBACL,OAAO,EAAE,YAAY,CAAC,OAAO;gBAC7B,IAAI,EAAE,YAAY,CAAC,IAAI;gBACvB,GAAG;aACJ;SACF;KACF,CAAA;AACH,CAAC;AAED,SAAS,cAAc,CACrB,SAAiB,EACjB,cAAsB,EACtB,aAAqB,EACrB,YAAoB,EACpB,aAAqB;IAErB,OAAO;;;;;;;;;EASP,SAAS;;;;;;;;EAQT,cAAc;;;;;;;;;;;;EAYd,aAAa;;;;;;EAMb,YAAY;;;;;;EAMZ,aAAa;;;CAGd,CAAA;AACD,CAAC"}

package/dist/types.d.ts

@@ -1,4 +1,5 @@
 import type { PathLike } from "node:fs";
+import type { PackageManager } from "./package-manager.js";
 export interface Config {
     projectRoot: string;
     rawDir: string;
@@ -107,6 +108,9 @@ export interface DestroyIndexResult {
 export interface DoctorReport {
     projectRoot: string;
     initialized: boolean;
+    packageManager: PackageManager;
+    runCommand: string;
+    agentKitInstalled: boolean;
     rawDir: string;
     storageDir: string;
     embeddingProvider: EmbeddingProvider;

package/dist/types.d.ts.map

@@ -1 +1 @@
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package/dist/version.d.ts

@@ -1,2 +1,2 @@
-export declare const VERSION = "0.4.4";
+export declare const VERSION = "0.4.5";
 //# sourceMappingURL=version.d.ts.map

package/dist/version.js

@@ -1,2 +1,2 @@
-export const VERSION = "0.4.4";
+export const VERSION = "0.4.5";
 //# sourceMappingURL=version.js.map

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jcode.labs/mimir",
-  "version": "0.4.4",
+  "version": "0.4.5",
   "description": "Mimir: open-source sovereign local RAG for confidential datasets and AI agents.",
   "type": "module",
   "license": "MIT",
@@ -65,7 +65,7 @@
     "unpdf": "^1.4.0",
     "yaml": "^2.8.1",
     "zod": "^4.1.13",
-    "@jcode.labs/mimir-tts": "0.4.4"
+    "@jcode.labs/mimir-tts": "0.4.5"
   },
   "devDependencies": {
     "@types/html-to-text": "^9.0.4",

package/skills/mimir/SKILL.md

@@ -40,24 +40,31 @@ From the repository root:
 
 ```bash
 pnpm exec kb doctor
-pnpm exec kb status
-pnpm exec kb security-audit
+```
+
+If Mimir is installed but setup is incomplete or the index is stale:
+
+```bash
+pnpm exec kb doctor --fix
 ```
 
 If Mimir is not installed:
 
 ```bash
 pnpm add -D @jcode.labs/mimir
-pnpm exec kb init
+pnpm exec kb setup
 ```
 
 If the package manager is npm:
 
 ```bash
 npm install --save-dev @jcode.labs/mimir
-npx kb init
+npx kb setup
 ```
 
+Use `status`, `audit`, and `security-audit` for deeper checks after `doctor` explains the current
+state.
+
 ## Provider Modes
 
 Default retrieval mode:
@@ -91,16 +98,16 @@ air-gapped or confidential work and preload model files under `embeddingModelPat
 After documents are added or changed:
 
 ```bash
-pnpm exec kb ingest
-pnpm exec kb doctor
+pnpm exec kb doctor --fix
 pnpm exec kb audit
 pnpm exec kb security-audit
 pnpm exec kb status
 ```
 
-`kb doctor` should show `ready=true` before relying on the index. The audit must show no missing or
-stale supported files, and the security audit should not show warnings before relying on Mimir for
-sensitive work.
+`kb doctor --fix` rebuilds the index only when supported files are present and the privacy posture
+has no warnings. `kb doctor` should show `ready=true` before relying on the index. The audit must
+show no missing or stale supported files, and the security audit should not show warnings before
+relying on Mimir for sensitive work.
 
 ## Query Workflow
 
@@ -169,7 +176,7 @@ destroy-index --yes` from the shell when the user explicitly wants to remove the
 ## Optional Audio Summaries
 
 If the user asks for a listenable or TTS summary, load the optional
-`.mimir/skills/mimir-audio-summary/` skill installed by `pnpm exec kb install-skill`.
+`.mimir/skills/mimir-audio-summary/` skill installed by `pnpm exec kb setup`.
 
 That skill should:
 
@@ -180,7 +187,14 @@ That skill should:
 
 ## Installing This Skill Into A Repository
 
-Run:
+Most repositories should run the full setup command:
+
+```bash
+pnpm exec kb setup
+```
+
+Use the lower-level skill installer only when Mimir is already initialized and you want to refresh
+the local agent kit:
 
 ```bash
 pnpm exec kb install-skill

package/skills/mimir-audio-summary/SKILL.md

@@ -30,6 +30,7 @@ The knowledge base stays local; the final audio is a generated artifact and must
 From the repository root, run:
 
 ```bash
+pnpm exec kb doctor
 pnpm exec kb status
 pnpm exec kb audit
 pnpm exec kb security-audit
@@ -38,12 +39,13 @@ pnpm exec kb security-audit
 If the audit reports missing or stale files, run:
 
 ```bash
-pnpm exec kb ingest
+pnpm exec kb doctor --fix
 pnpm exec kb audit
 ```
 
-Do not create an audio summary from stale or incomplete evidence unless the user explicitly accepts
-that limitation.
+`kb doctor --fix` rebuilds the index only when supported files are present and the privacy posture
+has no warnings. Do not create an audio summary from stale or incomplete evidence unless the user
+explicitly accepts that limitation.
 
 ## 2. Search Deeply Before Writing