@jbrowse/wiggle-core 4.3.0 → 5.0.0-beta.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/autoscale.js +16 -5
- package/package.json +6 -6
package/esm/autoscale.js
CHANGED
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@@ -116,16 +116,27 @@ export function computeScoreStats(summaryScoreMode, datasets) {
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116
116
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!overlaps(featurePositions[i * 2], featurePositions[i * 2 + 1], visStart, visEnd)) {
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117
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continue;
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118
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}
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119
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-
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120
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-
max
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119
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+
// Non-finite scores are skipped rather than folded in: a wig file may
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120
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+
// carry a NaN, and one of them poisons min/max and mean alike, collapsing
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121
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// the whole domain to the [0, 1] stub the callers fall back to.
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122
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+
const lo = minScores[i];
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123
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if (Number.isFinite(lo)) {
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124
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min = Math.min(min, lo);
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125
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}
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126
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const hi = maxScores[i];
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127
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if (Number.isFinite(hi)) {
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128
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max = Math.max(max, hi);
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129
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}
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// Mean/stddev always use featureScores (the average) regardless of
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// summaryScoreMode; min/max for the domain bounds come from the mode-
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123
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// selected arrays above. Intentional: sd-based autoscale centers on the
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// average-value distribution even in whiskers/min/max summary modes.
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134
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const avg = featureScores[i];
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126
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-
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127
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-
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128
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-
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135
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+
if (Number.isFinite(avg)) {
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136
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sum += avg;
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137
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sumSq += avg * avg;
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138
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count++;
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139
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+
}
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129
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}
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}
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if (count === 0 || !Number.isFinite(min) || !Number.isFinite(max)) {
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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1
1
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{
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"name": "@jbrowse/wiggle-core",
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3
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-
"version": "
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3
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+
"version": "5.0.0-beta.2",
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"type": "module",
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"description": "Shared scale and autoscale utilities for wiggle and coverage displays",
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"keywords": [
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@@ -29,12 +29,12 @@
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],
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"dependencies": {
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"@jbrowse/mobx-state-tree": "^6.5.1",
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32
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-
"@mui/icons-material": "^9.
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33
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-
"@mui/material": "^9.
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"@mui/icons-material": "^9.4.0",
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"@mui/material": "^9.4.0",
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"mobx-react": "^10.0.2",
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35
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-
"@jbrowse/core": "^
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36
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-
"@jbrowse/display-kit": "^
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-
"@jbrowse/render-core": "^
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35
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"@jbrowse/core": "^5.0.0-beta.2",
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"@jbrowse/display-kit": "^5.0.0-beta.2",
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"@jbrowse/render-core": "^5.0.0-beta.2"
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},
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"peerDependencies": {
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"react": ">=19.0.0"
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