@jbrowse/web-core 2.9.0 → 2.10.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseWebSession/index.d.ts +579 -244
- package/dist/BaseWebSession/index.js +15 -0
- package/esm/BaseWebSession/index.d.ts +579 -244
- package/esm/BaseWebSession/index.js +15 -0
- package/package.json +4 -4
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@@ -6,6 +6,21 @@ import TextSearchManager from '@jbrowse/core/TextSearch/TextSearchManager';
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import { BaseTrackConfig } from '@jbrowse/core/pluggableElementTypes';
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import PluginManager from '@jbrowse/core/PluginManager';
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import { BaseAssemblyConfigSchema } from '@jbrowse/core/assemblyManager';
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/**
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* #stateModel BaseWebSession
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* used for "web based" products, including jbrowse-web and react-app
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* composed of
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* - [ReferenceManagementSessionMixin](../referencemanagementsessionmixin)
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* - [DrawerWidgetSessionMixin](../drawerwidgetsessionmixin)
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* - [DialogQueueSessionMixin](../dialogqueuesessionmixin)
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* - [ThemeManagerSessionMixin](../thememanagersessionmixin)
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* - [MultipleViewsSessionMixin](../multipleviewssessionmixin)
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* - [SessionTracksManagerSessionMixin](../sessiontracksmanagersessionmixin)
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* - [SessionAssembliesMixin](../sessionassembliesmixin)
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* - [TemporaryAssembliesMixin](../temporaryassembliesmixin)
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* - [WebSessionConnectionsMixin](../websessionconnectionsmixin)
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* - [AppFocusMixin](../appfocusmixin)
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*/
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export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }: {
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pluginManager: PluginManager;
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assemblyConfigSchema: BaseAssemblyConfigSchema;
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@@ -167,9 +182,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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maxDepth: {
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type: string;
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defaultValue: number;
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description: string;
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* #volatile
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*/
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description: string;
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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@@ -281,11 +294,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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[x: string]: unknown;
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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[x: string]: unknown;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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getReverseRefNameMapForAdapter(adapterConf:
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getReverseRefNameMapForAdapter(adapterConf: {
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[x: string]: unknown;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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@@ -337,11 +356,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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-
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getAdapterMapEntry(adapterConf: {
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[x: string]: unknown;
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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[x: string]: unknown;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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getReverseRefNameMapForAdapter(adapterConf:
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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@@ -365,11 +390,13 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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} & {
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readonly initialized: boolean;
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readonly name: string;
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/**
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* #getter
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* list of config connections and session connections
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*/
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readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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readonly aliases: string[];
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readonly displayName: string | undefined;
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* #action
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*/
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readonly displayName: string | undefined;
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hasName(name: string): boolean;
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readonly allAliases: string[];
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readonly allRefNames: string[] | undefined;
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@@ -392,20 +419,24 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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}, lcAliases: {
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[x: string]: string | undefined;
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}): void;
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setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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* #getter
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*/
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setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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setLoadingP(p?: Promise<void> | undefined): void;
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load(): Promise<void>;
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* #getter
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load(): Promise<void>; /**
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* #method
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*/
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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[x: string]: unknown;
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf:
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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@@ -454,18 +485,20 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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}): void;
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setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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setLoadingP(p?: Promise<void> | undefined): void;
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load(): Promise<void>;
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* #action
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*/
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getRefNameMapForAdapter(adapterConf:
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf:
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf:
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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}, assemblyName: string | undefined, opts: {
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setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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}>; /**
|
|
847
|
+
* #getter
|
|
848
|
+
*/
|
|
778
849
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
779
850
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
780
851
|
}, {
|
|
@@ -821,16 +892,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
821
892
|
}): void;
|
|
822
893
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
823
894
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
824
|
-
load(): Promise<void>;
|
|
895
|
+
load(): Promise<void>; /**
|
|
896
|
+
* #property
|
|
897
|
+
*/
|
|
825
898
|
loadPre(): Promise<void>;
|
|
826
899
|
} & {
|
|
827
|
-
getAdapterMapEntry(adapterConf:
|
|
828
|
-
|
|
900
|
+
getAdapterMapEntry(adapterConf: {
|
|
901
|
+
[x: string]: unknown;
|
|
902
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
903
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
904
|
+
[x: string]: unknown;
|
|
905
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
829
906
|
[x: string]: string | undefined;
|
|
830
907
|
}>;
|
|
831
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
908
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
909
|
+
[x: string]: unknown;
|
|
910
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
832
911
|
[x: string]: string | undefined;
|
|
833
|
-
}>;
|
|
912
|
+
}>; /**
|
|
913
|
+
* #getter
|
|
914
|
+
*/
|
|
834
915
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
835
916
|
addAssembly(configuration: any): void;
|
|
836
917
|
replaceAssembly(idx: number, configuration: any): void;
|
|
@@ -884,11 +965,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
884
965
|
load(): Promise<void>;
|
|
885
966
|
loadPre(): Promise<void>;
|
|
886
967
|
} & {
|
|
887
|
-
getAdapterMapEntry(adapterConf:
|
|
888
|
-
|
|
968
|
+
getAdapterMapEntry(adapterConf: {
|
|
969
|
+
[x: string]: unknown;
|
|
970
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
971
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
972
|
+
[x: string]: unknown;
|
|
973
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
889
974
|
[x: string]: string | undefined;
|
|
890
975
|
}>;
|
|
891
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
976
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
977
|
+
[x: string]: unknown;
|
|
978
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
892
979
|
[x: string]: string | undefined;
|
|
893
980
|
}>;
|
|
894
981
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
@@ -912,11 +999,13 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
912
999
|
} & {
|
|
913
1000
|
readonly initialized: boolean;
|
|
914
1001
|
readonly name: string;
|
|
1002
|
+
/**
|
|
1003
|
+
* #getter
|
|
1004
|
+
* list of config connections and session connections
|
|
1005
|
+
*/
|
|
915
1006
|
readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
916
1007
|
readonly aliases: string[];
|
|
917
|
-
readonly displayName: string | undefined;
|
|
918
|
-
* #action
|
|
919
|
-
*/
|
|
1008
|
+
readonly displayName: string | undefined;
|
|
920
1009
|
hasName(name: string): boolean;
|
|
921
1010
|
readonly allAliases: string[];
|
|
922
1011
|
readonly allRefNames: string[] | undefined;
|
|
@@ -939,20 +1028,24 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
939
1028
|
}, lcAliases: {
|
|
940
1029
|
[x: string]: string | undefined;
|
|
941
1030
|
}): void;
|
|
942
|
-
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
943
|
-
* #getter
|
|
944
|
-
*/
|
|
1031
|
+
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
945
1032
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
946
|
-
load(): Promise<void>;
|
|
947
|
-
|
|
948
|
-
* #getter
|
|
1033
|
+
load(): Promise<void>; /**
|
|
1034
|
+
* #method
|
|
949
1035
|
*/
|
|
1036
|
+
loadPre(): Promise<void>;
|
|
950
1037
|
} & {
|
|
951
|
-
getAdapterMapEntry(adapterConf:
|
|
952
|
-
|
|
1038
|
+
getAdapterMapEntry(adapterConf: {
|
|
1039
|
+
[x: string]: unknown;
|
|
1040
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1041
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1042
|
+
[x: string]: unknown;
|
|
1043
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
953
1044
|
[x: string]: string | undefined;
|
|
954
1045
|
}>;
|
|
955
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1046
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1047
|
+
[x: string]: unknown;
|
|
1048
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
956
1049
|
[x: string]: string | undefined;
|
|
957
1050
|
}>;
|
|
958
1051
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1001,18 +1094,20 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1001
1094
|
}): void;
|
|
1002
1095
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1003
1096
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
1004
|
-
load(): Promise<void>;
|
|
1005
|
-
* #action
|
|
1006
|
-
*/
|
|
1097
|
+
load(): Promise<void>;
|
|
1007
1098
|
loadPre(): Promise<void>;
|
|
1008
1099
|
} & {
|
|
1009
|
-
getAdapterMapEntry(adapterConf:
|
|
1010
|
-
|
|
1011
|
-
|
|
1012
|
-
getRefNameMapForAdapter(adapterConf:
|
|
1100
|
+
getAdapterMapEntry(adapterConf: {
|
|
1101
|
+
[x: string]: unknown;
|
|
1102
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1103
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1104
|
+
[x: string]: unknown;
|
|
1105
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1013
1106
|
[x: string]: string | undefined;
|
|
1014
1107
|
}>;
|
|
1015
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1108
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1109
|
+
[x: string]: unknown;
|
|
1110
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1016
1111
|
[x: string]: string | undefined;
|
|
1017
1112
|
}>;
|
|
1018
1113
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
@@ -1066,11 +1161,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1066
1161
|
load(): Promise<void>;
|
|
1067
1162
|
loadPre(): Promise<void>;
|
|
1068
1163
|
} & {
|
|
1069
|
-
getAdapterMapEntry(adapterConf:
|
|
1070
|
-
|
|
1164
|
+
getAdapterMapEntry(adapterConf: {
|
|
1165
|
+
[x: string]: unknown;
|
|
1166
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1167
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1168
|
+
[x: string]: unknown;
|
|
1169
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1071
1170
|
[x: string]: string | undefined;
|
|
1072
1171
|
}>;
|
|
1073
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1172
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1173
|
+
[x: string]: unknown;
|
|
1174
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1074
1175
|
[x: string]: string | undefined;
|
|
1075
1176
|
}>;
|
|
1076
1177
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1122,11 +1223,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1122
1223
|
load(): Promise<void>;
|
|
1123
1224
|
loadPre(): Promise<void>;
|
|
1124
1225
|
} & {
|
|
1125
|
-
getAdapterMapEntry(adapterConf:
|
|
1126
|
-
|
|
1226
|
+
getAdapterMapEntry(adapterConf: {
|
|
1227
|
+
[x: string]: unknown;
|
|
1228
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1229
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1230
|
+
[x: string]: unknown;
|
|
1231
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1127
1232
|
[x: string]: string | undefined;
|
|
1128
1233
|
}>;
|
|
1129
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1234
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1235
|
+
[x: string]: unknown;
|
|
1236
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1130
1237
|
[x: string]: string | undefined;
|
|
1131
1238
|
}>;
|
|
1132
1239
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
@@ -1187,11 +1294,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1187
1294
|
load(): Promise<void>;
|
|
1188
1295
|
loadPre(): Promise<void>;
|
|
1189
1296
|
} & {
|
|
1190
|
-
getAdapterMapEntry(adapterConf:
|
|
1191
|
-
|
|
1297
|
+
getAdapterMapEntry(adapterConf: {
|
|
1298
|
+
[x: string]: unknown;
|
|
1299
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1300
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1301
|
+
[x: string]: unknown;
|
|
1302
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1192
1303
|
[x: string]: string | undefined;
|
|
1193
1304
|
}>;
|
|
1194
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1305
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1306
|
+
[x: string]: unknown;
|
|
1307
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1195
1308
|
[x: string]: string | undefined;
|
|
1196
1309
|
}>;
|
|
1197
1310
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1243,21 +1356,31 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1243
1356
|
load(): Promise<void>;
|
|
1244
1357
|
loadPre(): Promise<void>;
|
|
1245
1358
|
} & {
|
|
1246
|
-
getAdapterMapEntry(adapterConf:
|
|
1247
|
-
|
|
1359
|
+
getAdapterMapEntry(adapterConf: {
|
|
1360
|
+
[x: string]: unknown;
|
|
1361
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1362
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1363
|
+
[x: string]: unknown;
|
|
1364
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1248
1365
|
[x: string]: string | undefined;
|
|
1249
1366
|
}>;
|
|
1250
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1367
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1368
|
+
[x: string]: unknown;
|
|
1369
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1251
1370
|
[x: string]: string | undefined;
|
|
1252
1371
|
}>;
|
|
1253
1372
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1254
|
-
getRefNameMapForAdapter(adapterConf:
|
|
1373
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1374
|
+
[x: string]: unknown;
|
|
1375
|
+
}, assemblyName: string | undefined, opts: {
|
|
1255
1376
|
signal?: AbortSignal | undefined;
|
|
1256
1377
|
sessionId: string;
|
|
1257
1378
|
}): Promise<{
|
|
1258
1379
|
[x: string]: string | undefined;
|
|
1259
1380
|
} | undefined>;
|
|
1260
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1381
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1382
|
+
[x: string]: unknown;
|
|
1383
|
+
}, assemblyName: string | undefined, opts: {
|
|
1261
1384
|
signal?: AbortSignal | undefined;
|
|
1262
1385
|
sessionId: string;
|
|
1263
1386
|
}): Promise<{
|
|
@@ -1312,16 +1435,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1312
1435
|
}): void;
|
|
1313
1436
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1314
1437
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
1315
|
-
load(): Promise<void>;
|
|
1438
|
+
load(): Promise<void>; /**
|
|
1439
|
+
* #property
|
|
1440
|
+
*/
|
|
1316
1441
|
loadPre(): Promise<void>;
|
|
1317
1442
|
} & {
|
|
1318
|
-
getAdapterMapEntry(adapterConf:
|
|
1319
|
-
|
|
1443
|
+
getAdapterMapEntry(adapterConf: {
|
|
1444
|
+
[x: string]: unknown;
|
|
1445
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1446
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1447
|
+
[x: string]: unknown;
|
|
1448
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1320
1449
|
[x: string]: string | undefined;
|
|
1321
1450
|
}>;
|
|
1322
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1451
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1452
|
+
[x: string]: unknown;
|
|
1453
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1323
1454
|
[x: string]: string | undefined;
|
|
1324
|
-
}>;
|
|
1455
|
+
}>; /**
|
|
1456
|
+
* #getter
|
|
1457
|
+
*/
|
|
1325
1458
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1326
1459
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1327
1460
|
}, {
|
|
@@ -1368,16 +1501,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1368
1501
|
}): void;
|
|
1369
1502
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1370
1503
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
1371
|
-
load(): Promise<void>;
|
|
1504
|
+
load(): Promise<void>; /**
|
|
1505
|
+
* #property
|
|
1506
|
+
*/
|
|
1372
1507
|
loadPre(): Promise<void>;
|
|
1373
1508
|
} & {
|
|
1374
|
-
getAdapterMapEntry(adapterConf:
|
|
1375
|
-
|
|
1509
|
+
getAdapterMapEntry(adapterConf: {
|
|
1510
|
+
[x: string]: unknown;
|
|
1511
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1512
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1513
|
+
[x: string]: unknown;
|
|
1514
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1376
1515
|
[x: string]: string | undefined;
|
|
1377
1516
|
}>;
|
|
1378
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1517
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1518
|
+
[x: string]: unknown;
|
|
1519
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1379
1520
|
[x: string]: string | undefined;
|
|
1380
|
-
}>;
|
|
1521
|
+
}>; /**
|
|
1522
|
+
* #getter
|
|
1523
|
+
*/
|
|
1381
1524
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
1382
1525
|
addAssembly(configuration: any): void;
|
|
1383
1526
|
replaceAssembly(idx: number, configuration: any): void;
|
|
@@ -1450,11 +1593,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1450
1593
|
load(): Promise<void>;
|
|
1451
1594
|
loadPre(): Promise<void>;
|
|
1452
1595
|
} & {
|
|
1453
|
-
getAdapterMapEntry(adapterConf:
|
|
1454
|
-
|
|
1596
|
+
getAdapterMapEntry(adapterConf: {
|
|
1597
|
+
[x: string]: unknown;
|
|
1598
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1599
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1600
|
+
[x: string]: unknown;
|
|
1601
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1455
1602
|
[x: string]: string | undefined;
|
|
1456
1603
|
}>;
|
|
1457
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1604
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1605
|
+
[x: string]: unknown;
|
|
1606
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1458
1607
|
[x: string]: string | undefined;
|
|
1459
1608
|
}>;
|
|
1460
1609
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
@@ -1478,11 +1627,13 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1478
1627
|
} & {
|
|
1479
1628
|
readonly initialized: boolean;
|
|
1480
1629
|
readonly name: string;
|
|
1630
|
+
/**
|
|
1631
|
+
* #getter
|
|
1632
|
+
* list of config connections and session connections
|
|
1633
|
+
*/
|
|
1481
1634
|
readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1482
1635
|
readonly aliases: string[];
|
|
1483
|
-
readonly displayName: string | undefined;
|
|
1484
|
-
* #action
|
|
1485
|
-
*/
|
|
1636
|
+
readonly displayName: string | undefined;
|
|
1486
1637
|
hasName(name: string): boolean;
|
|
1487
1638
|
readonly allAliases: string[];
|
|
1488
1639
|
readonly allRefNames: string[] | undefined;
|
|
@@ -1505,20 +1656,24 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1505
1656
|
}, lcAliases: {
|
|
1506
1657
|
[x: string]: string | undefined;
|
|
1507
1658
|
}): void;
|
|
1508
|
-
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1509
|
-
* #getter
|
|
1510
|
-
*/
|
|
1659
|
+
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1511
1660
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
1512
|
-
load(): Promise<void>;
|
|
1513
|
-
|
|
1514
|
-
* #getter
|
|
1661
|
+
load(): Promise<void>; /**
|
|
1662
|
+
* #method
|
|
1515
1663
|
*/
|
|
1664
|
+
loadPre(): Promise<void>;
|
|
1516
1665
|
} & {
|
|
1517
|
-
getAdapterMapEntry(adapterConf:
|
|
1518
|
-
|
|
1666
|
+
getAdapterMapEntry(adapterConf: {
|
|
1667
|
+
[x: string]: unknown;
|
|
1668
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1669
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1670
|
+
[x: string]: unknown;
|
|
1671
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1519
1672
|
[x: string]: string | undefined;
|
|
1520
1673
|
}>;
|
|
1521
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1674
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1675
|
+
[x: string]: unknown;
|
|
1676
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1522
1677
|
[x: string]: string | undefined;
|
|
1523
1678
|
}>;
|
|
1524
1679
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1567,18 +1722,20 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1567
1722
|
}): void;
|
|
1568
1723
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1569
1724
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
1570
|
-
load(): Promise<void>;
|
|
1571
|
-
* #action
|
|
1572
|
-
*/
|
|
1725
|
+
load(): Promise<void>;
|
|
1573
1726
|
loadPre(): Promise<void>;
|
|
1574
1727
|
} & {
|
|
1575
|
-
getAdapterMapEntry(adapterConf:
|
|
1576
|
-
|
|
1577
|
-
|
|
1578
|
-
getRefNameMapForAdapter(adapterConf:
|
|
1728
|
+
getAdapterMapEntry(adapterConf: {
|
|
1729
|
+
[x: string]: unknown;
|
|
1730
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1731
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1732
|
+
[x: string]: unknown;
|
|
1733
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1579
1734
|
[x: string]: string | undefined;
|
|
1580
1735
|
}>;
|
|
1581
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1736
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1737
|
+
[x: string]: unknown;
|
|
1738
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1582
1739
|
[x: string]: string | undefined;
|
|
1583
1740
|
}>;
|
|
1584
1741
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
@@ -1632,11 +1789,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1632
1789
|
load(): Promise<void>;
|
|
1633
1790
|
loadPre(): Promise<void>;
|
|
1634
1791
|
} & {
|
|
1635
|
-
getAdapterMapEntry(adapterConf:
|
|
1636
|
-
|
|
1792
|
+
getAdapterMapEntry(adapterConf: {
|
|
1793
|
+
[x: string]: unknown;
|
|
1794
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1795
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1796
|
+
[x: string]: unknown;
|
|
1797
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1637
1798
|
[x: string]: string | undefined;
|
|
1638
1799
|
}>;
|
|
1639
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1800
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1801
|
+
[x: string]: unknown;
|
|
1802
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1640
1803
|
[x: string]: string | undefined;
|
|
1641
1804
|
}>;
|
|
1642
1805
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1688,11 +1851,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1688
1851
|
load(): Promise<void>;
|
|
1689
1852
|
loadPre(): Promise<void>;
|
|
1690
1853
|
} & {
|
|
1691
|
-
getAdapterMapEntry(adapterConf:
|
|
1692
|
-
|
|
1854
|
+
getAdapterMapEntry(adapterConf: {
|
|
1855
|
+
[x: string]: unknown;
|
|
1856
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1857
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1858
|
+
[x: string]: unknown;
|
|
1859
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1693
1860
|
[x: string]: string | undefined;
|
|
1694
1861
|
}>;
|
|
1695
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1862
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1863
|
+
[x: string]: unknown;
|
|
1864
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1696
1865
|
[x: string]: string | undefined;
|
|
1697
1866
|
}>;
|
|
1698
1867
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
@@ -1753,11 +1922,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1753
1922
|
load(): Promise<void>;
|
|
1754
1923
|
loadPre(): Promise<void>;
|
|
1755
1924
|
} & {
|
|
1756
|
-
getAdapterMapEntry(adapterConf:
|
|
1757
|
-
|
|
1925
|
+
getAdapterMapEntry(adapterConf: {
|
|
1926
|
+
[x: string]: unknown;
|
|
1927
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1928
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1929
|
+
[x: string]: unknown;
|
|
1930
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1758
1931
|
[x: string]: string | undefined;
|
|
1759
1932
|
}>;
|
|
1760
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1933
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1934
|
+
[x: string]: unknown;
|
|
1935
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1761
1936
|
[x: string]: string | undefined;
|
|
1762
1937
|
}>;
|
|
1763
1938
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1809,21 +1984,31 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1809
1984
|
load(): Promise<void>;
|
|
1810
1985
|
loadPre(): Promise<void>;
|
|
1811
1986
|
} & {
|
|
1812
|
-
getAdapterMapEntry(adapterConf:
|
|
1813
|
-
|
|
1987
|
+
getAdapterMapEntry(adapterConf: {
|
|
1988
|
+
[x: string]: unknown;
|
|
1989
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1990
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1991
|
+
[x: string]: unknown;
|
|
1992
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1814
1993
|
[x: string]: string | undefined;
|
|
1815
1994
|
}>;
|
|
1816
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1995
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1996
|
+
[x: string]: unknown;
|
|
1997
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1817
1998
|
[x: string]: string | undefined;
|
|
1818
1999
|
}>;
|
|
1819
2000
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1820
|
-
getRefNameMapForAdapter(adapterConf:
|
|
2001
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2002
|
+
[x: string]: unknown;
|
|
2003
|
+
}, assemblyName: string | undefined, opts: {
|
|
1821
2004
|
signal?: AbortSignal | undefined;
|
|
1822
2005
|
sessionId: string;
|
|
1823
2006
|
}): Promise<{
|
|
1824
2007
|
[x: string]: string | undefined;
|
|
1825
2008
|
} | undefined>;
|
|
1826
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2009
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2010
|
+
[x: string]: unknown;
|
|
2011
|
+
}, assemblyName: string | undefined, opts: {
|
|
1827
2012
|
signal?: AbortSignal | undefined;
|
|
1828
2013
|
sessionId: string;
|
|
1829
2014
|
}): Promise<{
|
|
@@ -1878,16 +2063,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1878
2063
|
}): void;
|
|
1879
2064
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1880
2065
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
1881
|
-
load(): Promise<void>;
|
|
2066
|
+
load(): Promise<void>; /**
|
|
2067
|
+
* #property
|
|
2068
|
+
*/
|
|
1882
2069
|
loadPre(): Promise<void>;
|
|
1883
2070
|
} & {
|
|
1884
|
-
getAdapterMapEntry(adapterConf:
|
|
1885
|
-
|
|
2071
|
+
getAdapterMapEntry(adapterConf: {
|
|
2072
|
+
[x: string]: unknown;
|
|
2073
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2074
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2075
|
+
[x: string]: unknown;
|
|
2076
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1886
2077
|
[x: string]: string | undefined;
|
|
1887
2078
|
}>;
|
|
1888
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2079
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2080
|
+
[x: string]: unknown;
|
|
2081
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1889
2082
|
[x: string]: string | undefined;
|
|
1890
|
-
}>;
|
|
2083
|
+
}>; /**
|
|
2084
|
+
* #getter
|
|
2085
|
+
*/
|
|
1891
2086
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1892
2087
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1893
2088
|
}, {
|
|
@@ -1934,16 +2129,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1934
2129
|
}): void;
|
|
1935
2130
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1936
2131
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
1937
|
-
load(): Promise<void>;
|
|
2132
|
+
load(): Promise<void>; /**
|
|
2133
|
+
* #property
|
|
2134
|
+
*/
|
|
1938
2135
|
loadPre(): Promise<void>;
|
|
1939
2136
|
} & {
|
|
1940
|
-
getAdapterMapEntry(adapterConf:
|
|
1941
|
-
|
|
2137
|
+
getAdapterMapEntry(adapterConf: {
|
|
2138
|
+
[x: string]: unknown;
|
|
2139
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2140
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2141
|
+
[x: string]: unknown;
|
|
2142
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1942
2143
|
[x: string]: string | undefined;
|
|
1943
2144
|
}>;
|
|
1944
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2145
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2146
|
+
[x: string]: unknown;
|
|
2147
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1945
2148
|
[x: string]: string | undefined;
|
|
1946
|
-
}>;
|
|
2149
|
+
}>; /**
|
|
2150
|
+
* #getter
|
|
2151
|
+
*/
|
|
1947
2152
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
1948
2153
|
addAssembly(configuration: any): void;
|
|
1949
2154
|
replaceAssembly(idx: number, configuration: any): void;
|
|
@@ -2456,11 +2661,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2456
2661
|
load(): Promise<void>;
|
|
2457
2662
|
loadPre(): Promise<void>;
|
|
2458
2663
|
} & {
|
|
2459
|
-
getAdapterMapEntry(adapterConf:
|
|
2460
|
-
|
|
2664
|
+
getAdapterMapEntry(adapterConf: {
|
|
2665
|
+
[x: string]: unknown;
|
|
2666
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2667
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2668
|
+
[x: string]: unknown;
|
|
2669
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2461
2670
|
[x: string]: string | undefined;
|
|
2462
2671
|
}>;
|
|
2463
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2672
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2673
|
+
[x: string]: unknown;
|
|
2674
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2464
2675
|
[x: string]: string | undefined;
|
|
2465
2676
|
}>;
|
|
2466
2677
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
@@ -2512,11 +2723,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2512
2723
|
load(): Promise<void>;
|
|
2513
2724
|
loadPre(): Promise<void>;
|
|
2514
2725
|
} & {
|
|
2515
|
-
getAdapterMapEntry(adapterConf:
|
|
2516
|
-
|
|
2726
|
+
getAdapterMapEntry(adapterConf: {
|
|
2727
|
+
[x: string]: unknown;
|
|
2728
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2729
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2730
|
+
[x: string]: unknown;
|
|
2731
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2517
2732
|
[x: string]: string | undefined;
|
|
2518
2733
|
}>;
|
|
2519
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2734
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2735
|
+
[x: string]: unknown;
|
|
2736
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2520
2737
|
[x: string]: string | undefined;
|
|
2521
2738
|
}>;
|
|
2522
2739
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
@@ -2540,11 +2757,13 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2540
2757
|
} & {
|
|
2541
2758
|
readonly initialized: boolean;
|
|
2542
2759
|
readonly name: string;
|
|
2760
|
+
/**
|
|
2761
|
+
* #getter
|
|
2762
|
+
* list of config connections and session connections
|
|
2763
|
+
*/
|
|
2543
2764
|
readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
2544
2765
|
readonly aliases: string[];
|
|
2545
|
-
readonly displayName: string | undefined;
|
|
2546
|
-
* #action
|
|
2547
|
-
*/
|
|
2766
|
+
readonly displayName: string | undefined;
|
|
2548
2767
|
hasName(name: string): boolean;
|
|
2549
2768
|
readonly allAliases: string[];
|
|
2550
2769
|
readonly allRefNames: string[] | undefined;
|
|
@@ -2567,20 +2786,24 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2567
2786
|
}, lcAliases: {
|
|
2568
2787
|
[x: string]: string | undefined;
|
|
2569
2788
|
}): void;
|
|
2570
|
-
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2571
|
-
* #getter
|
|
2572
|
-
*/
|
|
2789
|
+
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2573
2790
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
2574
|
-
load(): Promise<void>;
|
|
2575
|
-
|
|
2576
|
-
* #getter
|
|
2791
|
+
load(): Promise<void>; /**
|
|
2792
|
+
* #method
|
|
2577
2793
|
*/
|
|
2794
|
+
loadPre(): Promise<void>;
|
|
2578
2795
|
} & {
|
|
2579
|
-
getAdapterMapEntry(adapterConf:
|
|
2580
|
-
|
|
2796
|
+
getAdapterMapEntry(adapterConf: {
|
|
2797
|
+
[x: string]: unknown;
|
|
2798
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2799
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2800
|
+
[x: string]: unknown;
|
|
2801
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2581
2802
|
[x: string]: string | undefined;
|
|
2582
2803
|
}>;
|
|
2583
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2804
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2805
|
+
[x: string]: unknown;
|
|
2806
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2584
2807
|
[x: string]: string | undefined;
|
|
2585
2808
|
}>;
|
|
2586
2809
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -2629,18 +2852,20 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2629
2852
|
}): void;
|
|
2630
2853
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2631
2854
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
2632
|
-
load(): Promise<void>;
|
|
2633
|
-
* #action
|
|
2634
|
-
*/
|
|
2855
|
+
load(): Promise<void>;
|
|
2635
2856
|
loadPre(): Promise<void>;
|
|
2636
2857
|
} & {
|
|
2637
|
-
getAdapterMapEntry(adapterConf:
|
|
2638
|
-
|
|
2639
|
-
|
|
2640
|
-
getRefNameMapForAdapter(adapterConf:
|
|
2858
|
+
getAdapterMapEntry(adapterConf: {
|
|
2859
|
+
[x: string]: unknown;
|
|
2860
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2861
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2862
|
+
[x: string]: unknown;
|
|
2863
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2641
2864
|
[x: string]: string | undefined;
|
|
2642
2865
|
}>;
|
|
2643
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2866
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2867
|
+
[x: string]: unknown;
|
|
2868
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2644
2869
|
[x: string]: string | undefined;
|
|
2645
2870
|
}>;
|
|
2646
2871
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
@@ -2694,11 +2919,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2694
2919
|
load(): Promise<void>;
|
|
2695
2920
|
loadPre(): Promise<void>;
|
|
2696
2921
|
} & {
|
|
2697
|
-
getAdapterMapEntry(adapterConf:
|
|
2698
|
-
|
|
2922
|
+
getAdapterMapEntry(adapterConf: {
|
|
2923
|
+
[x: string]: unknown;
|
|
2924
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2925
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2926
|
+
[x: string]: unknown;
|
|
2927
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2699
2928
|
[x: string]: string | undefined;
|
|
2700
2929
|
}>;
|
|
2701
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2930
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2931
|
+
[x: string]: unknown;
|
|
2932
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2702
2933
|
[x: string]: string | undefined;
|
|
2703
2934
|
}>;
|
|
2704
2935
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -2750,11 +2981,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2750
2981
|
load(): Promise<void>;
|
|
2751
2982
|
loadPre(): Promise<void>;
|
|
2752
2983
|
} & {
|
|
2753
|
-
getAdapterMapEntry(adapterConf:
|
|
2754
|
-
|
|
2984
|
+
getAdapterMapEntry(adapterConf: {
|
|
2985
|
+
[x: string]: unknown;
|
|
2986
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2987
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2988
|
+
[x: string]: unknown;
|
|
2989
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2755
2990
|
[x: string]: string | undefined;
|
|
2756
2991
|
}>;
|
|
2757
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2992
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2993
|
+
[x: string]: unknown;
|
|
2994
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2758
2995
|
[x: string]: string | undefined;
|
|
2759
2996
|
}>;
|
|
2760
2997
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
@@ -2815,11 +3052,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2815
3052
|
load(): Promise<void>;
|
|
2816
3053
|
loadPre(): Promise<void>;
|
|
2817
3054
|
} & {
|
|
2818
|
-
getAdapterMapEntry(adapterConf:
|
|
2819
|
-
|
|
3055
|
+
getAdapterMapEntry(adapterConf: {
|
|
3056
|
+
[x: string]: unknown;
|
|
3057
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3058
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3059
|
+
[x: string]: unknown;
|
|
3060
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2820
3061
|
[x: string]: string | undefined;
|
|
2821
3062
|
}>;
|
|
2822
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3063
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3064
|
+
[x: string]: unknown;
|
|
3065
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2823
3066
|
[x: string]: string | undefined;
|
|
2824
3067
|
}>;
|
|
2825
3068
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -2871,21 +3114,31 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2871
3114
|
load(): Promise<void>;
|
|
2872
3115
|
loadPre(): Promise<void>;
|
|
2873
3116
|
} & {
|
|
2874
|
-
getAdapterMapEntry(adapterConf:
|
|
2875
|
-
|
|
3117
|
+
getAdapterMapEntry(adapterConf: {
|
|
3118
|
+
[x: string]: unknown;
|
|
3119
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3120
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3121
|
+
[x: string]: unknown;
|
|
3122
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2876
3123
|
[x: string]: string | undefined;
|
|
2877
3124
|
}>;
|
|
2878
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3125
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3126
|
+
[x: string]: unknown;
|
|
3127
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2879
3128
|
[x: string]: string | undefined;
|
|
2880
3129
|
}>;
|
|
2881
3130
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
2882
|
-
getRefNameMapForAdapter(adapterConf:
|
|
3131
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3132
|
+
[x: string]: unknown;
|
|
3133
|
+
}, assemblyName: string | undefined, opts: {
|
|
2883
3134
|
signal?: AbortSignal | undefined;
|
|
2884
3135
|
sessionId: string;
|
|
2885
3136
|
}): Promise<{
|
|
2886
3137
|
[x: string]: string | undefined;
|
|
2887
3138
|
} | undefined>;
|
|
2888
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3139
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3140
|
+
[x: string]: unknown;
|
|
3141
|
+
}, assemblyName: string | undefined, opts: {
|
|
2889
3142
|
signal?: AbortSignal | undefined;
|
|
2890
3143
|
sessionId: string;
|
|
2891
3144
|
}): Promise<{
|
|
@@ -2940,16 +3193,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2940
3193
|
}): void;
|
|
2941
3194
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2942
3195
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
2943
|
-
load(): Promise<void>;
|
|
3196
|
+
load(): Promise<void>; /**
|
|
3197
|
+
* #property
|
|
3198
|
+
*/
|
|
2944
3199
|
loadPre(): Promise<void>;
|
|
2945
3200
|
} & {
|
|
2946
|
-
getAdapterMapEntry(adapterConf:
|
|
2947
|
-
|
|
3201
|
+
getAdapterMapEntry(adapterConf: {
|
|
3202
|
+
[x: string]: unknown;
|
|
3203
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3204
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3205
|
+
[x: string]: unknown;
|
|
3206
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2948
3207
|
[x: string]: string | undefined;
|
|
2949
3208
|
}>;
|
|
2950
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3209
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3210
|
+
[x: string]: unknown;
|
|
3211
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2951
3212
|
[x: string]: string | undefined;
|
|
2952
|
-
}>;
|
|
3213
|
+
}>; /**
|
|
3214
|
+
* #getter
|
|
3215
|
+
*/
|
|
2953
3216
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
2954
3217
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
2955
3218
|
}, {
|
|
@@ -2996,16 +3259,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2996
3259
|
}): void;
|
|
2997
3260
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2998
3261
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
2999
|
-
load(): Promise<void>;
|
|
3262
|
+
load(): Promise<void>; /**
|
|
3263
|
+
* #property
|
|
3264
|
+
*/
|
|
3000
3265
|
loadPre(): Promise<void>;
|
|
3001
3266
|
} & {
|
|
3002
|
-
getAdapterMapEntry(adapterConf:
|
|
3003
|
-
|
|
3267
|
+
getAdapterMapEntry(adapterConf: {
|
|
3268
|
+
[x: string]: unknown;
|
|
3269
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3270
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3271
|
+
[x: string]: unknown;
|
|
3272
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3004
3273
|
[x: string]: string | undefined;
|
|
3005
3274
|
}>;
|
|
3006
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3275
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3276
|
+
[x: string]: unknown;
|
|
3277
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3007
3278
|
[x: string]: string | undefined;
|
|
3008
|
-
}>;
|
|
3279
|
+
}>; /**
|
|
3280
|
+
* #getter
|
|
3281
|
+
*/
|
|
3009
3282
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
3010
3283
|
addAssembly(configuration: any): void;
|
|
3011
3284
|
replaceAssembly(idx: number, configuration: any): void;
|
|
@@ -3059,11 +3332,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3059
3332
|
load(): Promise<void>;
|
|
3060
3333
|
loadPre(): Promise<void>;
|
|
3061
3334
|
} & {
|
|
3062
|
-
getAdapterMapEntry(adapterConf:
|
|
3063
|
-
|
|
3335
|
+
getAdapterMapEntry(adapterConf: {
|
|
3336
|
+
[x: string]: unknown;
|
|
3337
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3338
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3339
|
+
[x: string]: unknown;
|
|
3340
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3064
3341
|
[x: string]: string | undefined;
|
|
3065
3342
|
}>;
|
|
3066
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3343
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3344
|
+
[x: string]: unknown;
|
|
3345
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3067
3346
|
[x: string]: string | undefined;
|
|
3068
3347
|
}>;
|
|
3069
3348
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
@@ -3087,11 +3366,13 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3087
3366
|
} & {
|
|
3088
3367
|
readonly initialized: boolean;
|
|
3089
3368
|
readonly name: string;
|
|
3369
|
+
/**
|
|
3370
|
+
* #getter
|
|
3371
|
+
* list of config connections and session connections
|
|
3372
|
+
*/
|
|
3090
3373
|
readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
3091
3374
|
readonly aliases: string[];
|
|
3092
|
-
readonly displayName: string | undefined;
|
|
3093
|
-
* #action
|
|
3094
|
-
*/
|
|
3375
|
+
readonly displayName: string | undefined;
|
|
3095
3376
|
hasName(name: string): boolean;
|
|
3096
3377
|
readonly allAliases: string[];
|
|
3097
3378
|
readonly allRefNames: string[] | undefined;
|
|
@@ -3114,20 +3395,24 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3114
3395
|
}, lcAliases: {
|
|
3115
3396
|
[x: string]: string | undefined;
|
|
3116
3397
|
}): void;
|
|
3117
|
-
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3118
|
-
* #getter
|
|
3119
|
-
*/
|
|
3398
|
+
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3120
3399
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
3121
|
-
load(): Promise<void>;
|
|
3122
|
-
|
|
3123
|
-
* #getter
|
|
3400
|
+
load(): Promise<void>; /**
|
|
3401
|
+
* #method
|
|
3124
3402
|
*/
|
|
3403
|
+
loadPre(): Promise<void>;
|
|
3125
3404
|
} & {
|
|
3126
|
-
getAdapterMapEntry(adapterConf:
|
|
3127
|
-
|
|
3405
|
+
getAdapterMapEntry(adapterConf: {
|
|
3406
|
+
[x: string]: unknown;
|
|
3407
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3408
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3409
|
+
[x: string]: unknown;
|
|
3410
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3128
3411
|
[x: string]: string | undefined;
|
|
3129
3412
|
}>;
|
|
3130
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3413
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3414
|
+
[x: string]: unknown;
|
|
3415
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3131
3416
|
[x: string]: string | undefined;
|
|
3132
3417
|
}>;
|
|
3133
3418
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -3176,18 +3461,20 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3176
3461
|
}): void;
|
|
3177
3462
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3178
3463
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
3179
|
-
load(): Promise<void>;
|
|
3180
|
-
* #action
|
|
3181
|
-
*/
|
|
3464
|
+
load(): Promise<void>;
|
|
3182
3465
|
loadPre(): Promise<void>;
|
|
3183
3466
|
} & {
|
|
3184
|
-
getAdapterMapEntry(adapterConf:
|
|
3185
|
-
|
|
3186
|
-
|
|
3187
|
-
getRefNameMapForAdapter(adapterConf:
|
|
3467
|
+
getAdapterMapEntry(adapterConf: {
|
|
3468
|
+
[x: string]: unknown;
|
|
3469
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3470
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3471
|
+
[x: string]: unknown;
|
|
3472
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3188
3473
|
[x: string]: string | undefined;
|
|
3189
3474
|
}>;
|
|
3190
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3475
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3476
|
+
[x: string]: unknown;
|
|
3477
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3191
3478
|
[x: string]: string | undefined;
|
|
3192
3479
|
}>;
|
|
3193
3480
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
@@ -3241,11 +3528,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3241
3528
|
load(): Promise<void>;
|
|
3242
3529
|
loadPre(): Promise<void>;
|
|
3243
3530
|
} & {
|
|
3244
|
-
getAdapterMapEntry(adapterConf:
|
|
3245
|
-
|
|
3531
|
+
getAdapterMapEntry(adapterConf: {
|
|
3532
|
+
[x: string]: unknown;
|
|
3533
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3534
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3535
|
+
[x: string]: unknown;
|
|
3536
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3246
3537
|
[x: string]: string | undefined;
|
|
3247
3538
|
}>;
|
|
3248
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3539
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3540
|
+
[x: string]: unknown;
|
|
3541
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3249
3542
|
[x: string]: string | undefined;
|
|
3250
3543
|
}>;
|
|
3251
3544
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -3297,11 +3590,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3297
3590
|
load(): Promise<void>;
|
|
3298
3591
|
loadPre(): Promise<void>;
|
|
3299
3592
|
} & {
|
|
3300
|
-
getAdapterMapEntry(adapterConf:
|
|
3301
|
-
|
|
3593
|
+
getAdapterMapEntry(adapterConf: {
|
|
3594
|
+
[x: string]: unknown;
|
|
3595
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3596
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3597
|
+
[x: string]: unknown;
|
|
3598
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3302
3599
|
[x: string]: string | undefined;
|
|
3303
3600
|
}>;
|
|
3304
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3601
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3602
|
+
[x: string]: unknown;
|
|
3603
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3305
3604
|
[x: string]: string | undefined;
|
|
3306
3605
|
}>;
|
|
3307
3606
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
@@ -3362,11 +3661,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3362
3661
|
load(): Promise<void>;
|
|
3363
3662
|
loadPre(): Promise<void>;
|
|
3364
3663
|
} & {
|
|
3365
|
-
getAdapterMapEntry(adapterConf:
|
|
3366
|
-
|
|
3664
|
+
getAdapterMapEntry(adapterConf: {
|
|
3665
|
+
[x: string]: unknown;
|
|
3666
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3667
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3668
|
+
[x: string]: unknown;
|
|
3669
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3367
3670
|
[x: string]: string | undefined;
|
|
3368
3671
|
}>;
|
|
3369
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3672
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3673
|
+
[x: string]: unknown;
|
|
3674
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3370
3675
|
[x: string]: string | undefined;
|
|
3371
3676
|
}>;
|
|
3372
3677
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -3418,21 +3723,31 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3418
3723
|
load(): Promise<void>;
|
|
3419
3724
|
loadPre(): Promise<void>;
|
|
3420
3725
|
} & {
|
|
3421
|
-
getAdapterMapEntry(adapterConf:
|
|
3422
|
-
|
|
3726
|
+
getAdapterMapEntry(adapterConf: {
|
|
3727
|
+
[x: string]: unknown;
|
|
3728
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3729
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3730
|
+
[x: string]: unknown;
|
|
3731
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3423
3732
|
[x: string]: string | undefined;
|
|
3424
3733
|
}>;
|
|
3425
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3734
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3735
|
+
[x: string]: unknown;
|
|
3736
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3426
3737
|
[x: string]: string | undefined;
|
|
3427
3738
|
}>;
|
|
3428
3739
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
3429
|
-
getRefNameMapForAdapter(adapterConf:
|
|
3740
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3741
|
+
[x: string]: unknown;
|
|
3742
|
+
}, assemblyName: string | undefined, opts: {
|
|
3430
3743
|
signal?: AbortSignal | undefined;
|
|
3431
3744
|
sessionId: string;
|
|
3432
3745
|
}): Promise<{
|
|
3433
3746
|
[x: string]: string | undefined;
|
|
3434
3747
|
} | undefined>;
|
|
3435
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3748
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3749
|
+
[x: string]: unknown;
|
|
3750
|
+
}, assemblyName: string | undefined, opts: {
|
|
3436
3751
|
signal?: AbortSignal | undefined;
|
|
3437
3752
|
sessionId: string;
|
|
3438
3753
|
}): Promise<{
|
|
@@ -3487,16 +3802,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3487
3802
|
}): void;
|
|
3488
3803
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3489
3804
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
3490
|
-
load(): Promise<void>;
|
|
3805
|
+
load(): Promise<void>; /**
|
|
3806
|
+
* #property
|
|
3807
|
+
*/
|
|
3491
3808
|
loadPre(): Promise<void>;
|
|
3492
3809
|
} & {
|
|
3493
|
-
getAdapterMapEntry(adapterConf:
|
|
3494
|
-
|
|
3810
|
+
getAdapterMapEntry(adapterConf: {
|
|
3811
|
+
[x: string]: unknown;
|
|
3812
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3813
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3814
|
+
[x: string]: unknown;
|
|
3815
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3495
3816
|
[x: string]: string | undefined;
|
|
3496
3817
|
}>;
|
|
3497
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3818
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3819
|
+
[x: string]: unknown;
|
|
3820
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3498
3821
|
[x: string]: string | undefined;
|
|
3499
|
-
}>;
|
|
3822
|
+
}>; /**
|
|
3823
|
+
* #getter
|
|
3824
|
+
*/
|
|
3500
3825
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
3501
3826
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
3502
3827
|
}, {
|
|
@@ -3543,16 +3868,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3543
3868
|
}): void;
|
|
3544
3869
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3545
3870
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
3546
|
-
load(): Promise<void>;
|
|
3871
|
+
load(): Promise<void>; /**
|
|
3872
|
+
* #property
|
|
3873
|
+
*/
|
|
3547
3874
|
loadPre(): Promise<void>;
|
|
3548
3875
|
} & {
|
|
3549
|
-
getAdapterMapEntry(adapterConf:
|
|
3550
|
-
|
|
3876
|
+
getAdapterMapEntry(adapterConf: {
|
|
3877
|
+
[x: string]: unknown;
|
|
3878
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3879
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3880
|
+
[x: string]: unknown;
|
|
3881
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3551
3882
|
[x: string]: string | undefined;
|
|
3552
3883
|
}>;
|
|
3553
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3884
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3885
|
+
[x: string]: unknown;
|
|
3886
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3554
3887
|
[x: string]: string | undefined;
|
|
3555
|
-
}>;
|
|
3888
|
+
}>; /**
|
|
3889
|
+
* #getter
|
|
3890
|
+
*/
|
|
3556
3891
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
3557
3892
|
addAssembly(configuration: any): void;
|
|
3558
3893
|
replaceAssembly(idx: number, configuration: any): void;
|