@jbrowse/web-core 2.8.0 → 2.10.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseWebSession/index.d.ts +584 -244
- package/dist/BaseWebSession/index.js +15 -0
- package/esm/BaseWebSession/index.d.ts +584 -244
- package/esm/BaseWebSession/index.js +15 -0
- package/package.json +4 -4
|
@@ -6,6 +6,21 @@ import TextSearchManager from '@jbrowse/core/TextSearch/TextSearchManager';
|
|
|
6
6
|
import { BaseTrackConfig } from '@jbrowse/core/pluggableElementTypes';
|
|
7
7
|
import PluginManager from '@jbrowse/core/PluginManager';
|
|
8
8
|
import { BaseAssemblyConfigSchema } from '@jbrowse/core/assemblyManager';
|
|
9
|
+
/**
|
|
10
|
+
* #stateModel BaseWebSession
|
|
11
|
+
* used for "web based" products, including jbrowse-web and react-app
|
|
12
|
+
* composed of
|
|
13
|
+
* - [ReferenceManagementSessionMixin](../referencemanagementsessionmixin)
|
|
14
|
+
* - [DrawerWidgetSessionMixin](../drawerwidgetsessionmixin)
|
|
15
|
+
* - [DialogQueueSessionMixin](../dialogqueuesessionmixin)
|
|
16
|
+
* - [ThemeManagerSessionMixin](../thememanagersessionmixin)
|
|
17
|
+
* - [MultipleViewsSessionMixin](../multipleviewssessionmixin)
|
|
18
|
+
* - [SessionTracksManagerSessionMixin](../sessiontracksmanagersessionmixin)
|
|
19
|
+
* - [SessionAssembliesMixin](../sessionassembliesmixin)
|
|
20
|
+
* - [TemporaryAssembliesMixin](../temporaryassembliesmixin)
|
|
21
|
+
* - [WebSessionConnectionsMixin](../websessionconnectionsmixin)
|
|
22
|
+
* - [AppFocusMixin](../appfocusmixin)
|
|
23
|
+
*/
|
|
9
24
|
export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }: {
|
|
10
25
|
pluginManager: PluginManager;
|
|
11
26
|
assemblyConfigSchema: BaseAssemblyConfigSchema;
|
|
@@ -164,6 +179,11 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
164
179
|
defaultValue: number;
|
|
165
180
|
description: string;
|
|
166
181
|
};
|
|
182
|
+
maxDepth: {
|
|
183
|
+
type: string;
|
|
184
|
+
defaultValue: number;
|
|
185
|
+
description: string;
|
|
186
|
+
};
|
|
167
187
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
168
188
|
formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
169
189
|
config: {
|
|
@@ -175,9 +195,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
175
195
|
hideUris: {
|
|
176
196
|
type: string;
|
|
177
197
|
defaultValue: boolean;
|
|
178
|
-
};
|
|
179
|
-
* #getter
|
|
180
|
-
*/
|
|
198
|
+
};
|
|
181
199
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
182
200
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>>, callbacks: Function[], dereferenceTypeCount: Record<string, number>): void;
|
|
183
201
|
} & {
|
|
@@ -276,11 +294,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
276
294
|
load(): Promise<void>;
|
|
277
295
|
loadPre(): Promise<void>;
|
|
278
296
|
} & {
|
|
279
|
-
getAdapterMapEntry(adapterConf:
|
|
280
|
-
|
|
297
|
+
getAdapterMapEntry(adapterConf: {
|
|
298
|
+
[x: string]: unknown;
|
|
299
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
300
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
301
|
+
[x: string]: unknown;
|
|
302
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
281
303
|
[x: string]: string | undefined;
|
|
282
304
|
}>;
|
|
283
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
305
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
306
|
+
[x: string]: unknown;
|
|
307
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
284
308
|
[x: string]: string | undefined;
|
|
285
309
|
}>;
|
|
286
310
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
@@ -332,11 +356,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
332
356
|
load(): Promise<void>;
|
|
333
357
|
loadPre(): Promise<void>;
|
|
334
358
|
} & {
|
|
335
|
-
getAdapterMapEntry(adapterConf:
|
|
336
|
-
|
|
359
|
+
getAdapterMapEntry(adapterConf: {
|
|
360
|
+
[x: string]: unknown;
|
|
361
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
362
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
363
|
+
[x: string]: unknown;
|
|
364
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
337
365
|
[x: string]: string | undefined;
|
|
338
366
|
}>;
|
|
339
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
367
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
368
|
+
[x: string]: unknown;
|
|
369
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
340
370
|
[x: string]: string | undefined;
|
|
341
371
|
}>;
|
|
342
372
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
@@ -360,11 +390,13 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
360
390
|
} & {
|
|
361
391
|
readonly initialized: boolean;
|
|
362
392
|
readonly name: string;
|
|
393
|
+
/**
|
|
394
|
+
* #getter
|
|
395
|
+
* list of config connections and session connections
|
|
396
|
+
*/
|
|
363
397
|
readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
364
398
|
readonly aliases: string[];
|
|
365
|
-
readonly displayName: string | undefined;
|
|
366
|
-
* #action
|
|
367
|
-
*/
|
|
399
|
+
readonly displayName: string | undefined;
|
|
368
400
|
hasName(name: string): boolean;
|
|
369
401
|
readonly allAliases: string[];
|
|
370
402
|
readonly allRefNames: string[] | undefined;
|
|
@@ -387,20 +419,24 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
387
419
|
}, lcAliases: {
|
|
388
420
|
[x: string]: string | undefined;
|
|
389
421
|
}): void;
|
|
390
|
-
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
391
|
-
* #getter
|
|
392
|
-
*/
|
|
422
|
+
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
393
423
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
394
|
-
load(): Promise<void>;
|
|
395
|
-
|
|
396
|
-
* #getter
|
|
424
|
+
load(): Promise<void>; /**
|
|
425
|
+
* #method
|
|
397
426
|
*/
|
|
427
|
+
loadPre(): Promise<void>;
|
|
398
428
|
} & {
|
|
399
|
-
getAdapterMapEntry(adapterConf:
|
|
400
|
-
|
|
429
|
+
getAdapterMapEntry(adapterConf: {
|
|
430
|
+
[x: string]: unknown;
|
|
431
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
432
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
433
|
+
[x: string]: unknown;
|
|
434
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
401
435
|
[x: string]: string | undefined;
|
|
402
436
|
}>;
|
|
403
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
437
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
438
|
+
[x: string]: unknown;
|
|
439
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
404
440
|
[x: string]: string | undefined;
|
|
405
441
|
}>;
|
|
406
442
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -449,18 +485,20 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
449
485
|
}): void;
|
|
450
486
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
451
487
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
452
|
-
load(): Promise<void>;
|
|
453
|
-
* #action
|
|
454
|
-
*/
|
|
488
|
+
load(): Promise<void>;
|
|
455
489
|
loadPre(): Promise<void>;
|
|
456
490
|
} & {
|
|
457
|
-
getAdapterMapEntry(adapterConf:
|
|
458
|
-
|
|
459
|
-
|
|
460
|
-
getRefNameMapForAdapter(adapterConf:
|
|
491
|
+
getAdapterMapEntry(adapterConf: {
|
|
492
|
+
[x: string]: unknown;
|
|
493
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
494
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
495
|
+
[x: string]: unknown;
|
|
496
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
461
497
|
[x: string]: string | undefined;
|
|
462
498
|
}>;
|
|
463
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
499
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
500
|
+
[x: string]: unknown;
|
|
501
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
464
502
|
[x: string]: string | undefined;
|
|
465
503
|
}>;
|
|
466
504
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
@@ -514,11 +552,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
514
552
|
load(): Promise<void>;
|
|
515
553
|
loadPre(): Promise<void>;
|
|
516
554
|
} & {
|
|
517
|
-
getAdapterMapEntry(adapterConf:
|
|
518
|
-
|
|
555
|
+
getAdapterMapEntry(adapterConf: {
|
|
556
|
+
[x: string]: unknown;
|
|
557
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
558
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
559
|
+
[x: string]: unknown;
|
|
560
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
519
561
|
[x: string]: string | undefined;
|
|
520
562
|
}>;
|
|
521
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
563
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
564
|
+
[x: string]: unknown;
|
|
565
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
522
566
|
[x: string]: string | undefined;
|
|
523
567
|
}>;
|
|
524
568
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -570,11 +614,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
570
614
|
load(): Promise<void>;
|
|
571
615
|
loadPre(): Promise<void>;
|
|
572
616
|
} & {
|
|
573
|
-
getAdapterMapEntry(adapterConf:
|
|
574
|
-
|
|
617
|
+
getAdapterMapEntry(adapterConf: {
|
|
618
|
+
[x: string]: unknown;
|
|
619
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
620
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
621
|
+
[x: string]: unknown;
|
|
622
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
575
623
|
[x: string]: string | undefined;
|
|
576
624
|
}>;
|
|
577
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
625
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
626
|
+
[x: string]: unknown;
|
|
627
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
578
628
|
[x: string]: string | undefined;
|
|
579
629
|
}>;
|
|
580
630
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
@@ -635,11 +685,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
635
685
|
load(): Promise<void>;
|
|
636
686
|
loadPre(): Promise<void>;
|
|
637
687
|
} & {
|
|
638
|
-
getAdapterMapEntry(adapterConf:
|
|
639
|
-
|
|
688
|
+
getAdapterMapEntry(adapterConf: {
|
|
689
|
+
[x: string]: unknown;
|
|
690
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
691
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
692
|
+
[x: string]: unknown;
|
|
693
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
640
694
|
[x: string]: string | undefined;
|
|
641
695
|
}>;
|
|
642
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
696
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
697
|
+
[x: string]: unknown;
|
|
698
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
643
699
|
[x: string]: string | undefined;
|
|
644
700
|
}>;
|
|
645
701
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -691,21 +747,31 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
691
747
|
load(): Promise<void>;
|
|
692
748
|
loadPre(): Promise<void>;
|
|
693
749
|
} & {
|
|
694
|
-
getAdapterMapEntry(adapterConf:
|
|
695
|
-
|
|
750
|
+
getAdapterMapEntry(adapterConf: {
|
|
751
|
+
[x: string]: unknown;
|
|
752
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
753
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
754
|
+
[x: string]: unknown;
|
|
755
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
696
756
|
[x: string]: string | undefined;
|
|
697
757
|
}>;
|
|
698
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
758
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
759
|
+
[x: string]: unknown;
|
|
760
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
699
761
|
[x: string]: string | undefined;
|
|
700
762
|
}>;
|
|
701
763
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
702
|
-
getRefNameMapForAdapter(adapterConf:
|
|
764
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
765
|
+
[x: string]: unknown;
|
|
766
|
+
}, assemblyName: string | undefined, opts: {
|
|
703
767
|
signal?: AbortSignal | undefined;
|
|
704
768
|
sessionId: string;
|
|
705
769
|
}): Promise<{
|
|
706
770
|
[x: string]: string | undefined;
|
|
707
771
|
} | undefined>;
|
|
708
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
772
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
773
|
+
[x: string]: unknown;
|
|
774
|
+
}, assemblyName: string | undefined, opts: {
|
|
709
775
|
signal?: AbortSignal | undefined;
|
|
710
776
|
sessionId: string;
|
|
711
777
|
}): Promise<{
|
|
@@ -760,16 +826,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
760
826
|
}): void;
|
|
761
827
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
762
828
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
763
|
-
load(): Promise<void>;
|
|
829
|
+
load(): Promise<void>; /**
|
|
830
|
+
* #property
|
|
831
|
+
*/
|
|
764
832
|
loadPre(): Promise<void>;
|
|
765
833
|
} & {
|
|
766
|
-
getAdapterMapEntry(adapterConf:
|
|
767
|
-
|
|
834
|
+
getAdapterMapEntry(adapterConf: {
|
|
835
|
+
[x: string]: unknown;
|
|
836
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
837
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
838
|
+
[x: string]: unknown;
|
|
839
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
768
840
|
[x: string]: string | undefined;
|
|
769
841
|
}>;
|
|
770
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
842
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
843
|
+
[x: string]: unknown;
|
|
844
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
771
845
|
[x: string]: string | undefined;
|
|
772
|
-
}>;
|
|
846
|
+
}>; /**
|
|
847
|
+
* #getter
|
|
848
|
+
*/
|
|
773
849
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
774
850
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
775
851
|
}, {
|
|
@@ -816,16 +892,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
816
892
|
}): void;
|
|
817
893
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
818
894
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
819
|
-
load(): Promise<void>;
|
|
895
|
+
load(): Promise<void>; /**
|
|
896
|
+
* #property
|
|
897
|
+
*/
|
|
820
898
|
loadPre(): Promise<void>;
|
|
821
899
|
} & {
|
|
822
|
-
getAdapterMapEntry(adapterConf:
|
|
823
|
-
|
|
900
|
+
getAdapterMapEntry(adapterConf: {
|
|
901
|
+
[x: string]: unknown;
|
|
902
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
903
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
904
|
+
[x: string]: unknown;
|
|
905
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
824
906
|
[x: string]: string | undefined;
|
|
825
907
|
}>;
|
|
826
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
908
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
909
|
+
[x: string]: unknown;
|
|
910
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
827
911
|
[x: string]: string | undefined;
|
|
828
|
-
}>;
|
|
912
|
+
}>; /**
|
|
913
|
+
* #getter
|
|
914
|
+
*/
|
|
829
915
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
830
916
|
addAssembly(configuration: any): void;
|
|
831
917
|
replaceAssembly(idx: number, configuration: any): void;
|
|
@@ -879,11 +965,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
879
965
|
load(): Promise<void>;
|
|
880
966
|
loadPre(): Promise<void>;
|
|
881
967
|
} & {
|
|
882
|
-
getAdapterMapEntry(adapterConf:
|
|
883
|
-
|
|
968
|
+
getAdapterMapEntry(adapterConf: {
|
|
969
|
+
[x: string]: unknown;
|
|
970
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
971
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
972
|
+
[x: string]: unknown;
|
|
973
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
884
974
|
[x: string]: string | undefined;
|
|
885
975
|
}>;
|
|
886
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
976
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
977
|
+
[x: string]: unknown;
|
|
978
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
887
979
|
[x: string]: string | undefined;
|
|
888
980
|
}>;
|
|
889
981
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
@@ -907,11 +999,13 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
907
999
|
} & {
|
|
908
1000
|
readonly initialized: boolean;
|
|
909
1001
|
readonly name: string;
|
|
1002
|
+
/**
|
|
1003
|
+
* #getter
|
|
1004
|
+
* list of config connections and session connections
|
|
1005
|
+
*/
|
|
910
1006
|
readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
911
1007
|
readonly aliases: string[];
|
|
912
|
-
readonly displayName: string | undefined;
|
|
913
|
-
* #action
|
|
914
|
-
*/
|
|
1008
|
+
readonly displayName: string | undefined;
|
|
915
1009
|
hasName(name: string): boolean;
|
|
916
1010
|
readonly allAliases: string[];
|
|
917
1011
|
readonly allRefNames: string[] | undefined;
|
|
@@ -934,20 +1028,24 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
934
1028
|
}, lcAliases: {
|
|
935
1029
|
[x: string]: string | undefined;
|
|
936
1030
|
}): void;
|
|
937
|
-
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
938
|
-
* #getter
|
|
939
|
-
*/
|
|
1031
|
+
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
940
1032
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
941
|
-
load(): Promise<void>;
|
|
942
|
-
|
|
943
|
-
* #getter
|
|
1033
|
+
load(): Promise<void>; /**
|
|
1034
|
+
* #method
|
|
944
1035
|
*/
|
|
1036
|
+
loadPre(): Promise<void>;
|
|
945
1037
|
} & {
|
|
946
|
-
getAdapterMapEntry(adapterConf:
|
|
947
|
-
|
|
1038
|
+
getAdapterMapEntry(adapterConf: {
|
|
1039
|
+
[x: string]: unknown;
|
|
1040
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1041
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1042
|
+
[x: string]: unknown;
|
|
1043
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
948
1044
|
[x: string]: string | undefined;
|
|
949
1045
|
}>;
|
|
950
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1046
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1047
|
+
[x: string]: unknown;
|
|
1048
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
951
1049
|
[x: string]: string | undefined;
|
|
952
1050
|
}>;
|
|
953
1051
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -996,18 +1094,20 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
996
1094
|
}): void;
|
|
997
1095
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
998
1096
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
999
|
-
load(): Promise<void>;
|
|
1000
|
-
* #action
|
|
1001
|
-
*/
|
|
1097
|
+
load(): Promise<void>;
|
|
1002
1098
|
loadPre(): Promise<void>;
|
|
1003
1099
|
} & {
|
|
1004
|
-
getAdapterMapEntry(adapterConf:
|
|
1005
|
-
|
|
1006
|
-
|
|
1007
|
-
getRefNameMapForAdapter(adapterConf:
|
|
1100
|
+
getAdapterMapEntry(adapterConf: {
|
|
1101
|
+
[x: string]: unknown;
|
|
1102
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1103
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1104
|
+
[x: string]: unknown;
|
|
1105
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1008
1106
|
[x: string]: string | undefined;
|
|
1009
1107
|
}>;
|
|
1010
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1108
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1109
|
+
[x: string]: unknown;
|
|
1110
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1011
1111
|
[x: string]: string | undefined;
|
|
1012
1112
|
}>;
|
|
1013
1113
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
@@ -1061,11 +1161,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1061
1161
|
load(): Promise<void>;
|
|
1062
1162
|
loadPre(): Promise<void>;
|
|
1063
1163
|
} & {
|
|
1064
|
-
getAdapterMapEntry(adapterConf:
|
|
1065
|
-
|
|
1164
|
+
getAdapterMapEntry(adapterConf: {
|
|
1165
|
+
[x: string]: unknown;
|
|
1166
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1167
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1168
|
+
[x: string]: unknown;
|
|
1169
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1066
1170
|
[x: string]: string | undefined;
|
|
1067
1171
|
}>;
|
|
1068
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1172
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1173
|
+
[x: string]: unknown;
|
|
1174
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1069
1175
|
[x: string]: string | undefined;
|
|
1070
1176
|
}>;
|
|
1071
1177
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1117,11 +1223,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1117
1223
|
load(): Promise<void>;
|
|
1118
1224
|
loadPre(): Promise<void>;
|
|
1119
1225
|
} & {
|
|
1120
|
-
getAdapterMapEntry(adapterConf:
|
|
1121
|
-
|
|
1226
|
+
getAdapterMapEntry(adapterConf: {
|
|
1227
|
+
[x: string]: unknown;
|
|
1228
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1229
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1230
|
+
[x: string]: unknown;
|
|
1231
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1122
1232
|
[x: string]: string | undefined;
|
|
1123
1233
|
}>;
|
|
1124
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1234
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1235
|
+
[x: string]: unknown;
|
|
1236
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1125
1237
|
[x: string]: string | undefined;
|
|
1126
1238
|
}>;
|
|
1127
1239
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
@@ -1182,11 +1294,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1182
1294
|
load(): Promise<void>;
|
|
1183
1295
|
loadPre(): Promise<void>;
|
|
1184
1296
|
} & {
|
|
1185
|
-
getAdapterMapEntry(adapterConf:
|
|
1186
|
-
|
|
1297
|
+
getAdapterMapEntry(adapterConf: {
|
|
1298
|
+
[x: string]: unknown;
|
|
1299
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1300
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1301
|
+
[x: string]: unknown;
|
|
1302
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1187
1303
|
[x: string]: string | undefined;
|
|
1188
1304
|
}>;
|
|
1189
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1305
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1306
|
+
[x: string]: unknown;
|
|
1307
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1190
1308
|
[x: string]: string | undefined;
|
|
1191
1309
|
}>;
|
|
1192
1310
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1238,21 +1356,31 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1238
1356
|
load(): Promise<void>;
|
|
1239
1357
|
loadPre(): Promise<void>;
|
|
1240
1358
|
} & {
|
|
1241
|
-
getAdapterMapEntry(adapterConf:
|
|
1242
|
-
|
|
1359
|
+
getAdapterMapEntry(adapterConf: {
|
|
1360
|
+
[x: string]: unknown;
|
|
1361
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1362
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1363
|
+
[x: string]: unknown;
|
|
1364
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1243
1365
|
[x: string]: string | undefined;
|
|
1244
1366
|
}>;
|
|
1245
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1367
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1368
|
+
[x: string]: unknown;
|
|
1369
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1246
1370
|
[x: string]: string | undefined;
|
|
1247
1371
|
}>;
|
|
1248
1372
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1249
|
-
getRefNameMapForAdapter(adapterConf:
|
|
1373
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1374
|
+
[x: string]: unknown;
|
|
1375
|
+
}, assemblyName: string | undefined, opts: {
|
|
1250
1376
|
signal?: AbortSignal | undefined;
|
|
1251
1377
|
sessionId: string;
|
|
1252
1378
|
}): Promise<{
|
|
1253
1379
|
[x: string]: string | undefined;
|
|
1254
1380
|
} | undefined>;
|
|
1255
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1381
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1382
|
+
[x: string]: unknown;
|
|
1383
|
+
}, assemblyName: string | undefined, opts: {
|
|
1256
1384
|
signal?: AbortSignal | undefined;
|
|
1257
1385
|
sessionId: string;
|
|
1258
1386
|
}): Promise<{
|
|
@@ -1307,16 +1435,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1307
1435
|
}): void;
|
|
1308
1436
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1309
1437
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
1310
|
-
load(): Promise<void>;
|
|
1438
|
+
load(): Promise<void>; /**
|
|
1439
|
+
* #property
|
|
1440
|
+
*/
|
|
1311
1441
|
loadPre(): Promise<void>;
|
|
1312
1442
|
} & {
|
|
1313
|
-
getAdapterMapEntry(adapterConf:
|
|
1314
|
-
|
|
1443
|
+
getAdapterMapEntry(adapterConf: {
|
|
1444
|
+
[x: string]: unknown;
|
|
1445
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1446
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1447
|
+
[x: string]: unknown;
|
|
1448
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1315
1449
|
[x: string]: string | undefined;
|
|
1316
1450
|
}>;
|
|
1317
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1451
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1452
|
+
[x: string]: unknown;
|
|
1453
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1318
1454
|
[x: string]: string | undefined;
|
|
1319
|
-
}>;
|
|
1455
|
+
}>; /**
|
|
1456
|
+
* #getter
|
|
1457
|
+
*/
|
|
1320
1458
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1321
1459
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1322
1460
|
}, {
|
|
@@ -1363,16 +1501,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1363
1501
|
}): void;
|
|
1364
1502
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1365
1503
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
1366
|
-
load(): Promise<void>;
|
|
1504
|
+
load(): Promise<void>; /**
|
|
1505
|
+
* #property
|
|
1506
|
+
*/
|
|
1367
1507
|
loadPre(): Promise<void>;
|
|
1368
1508
|
} & {
|
|
1369
|
-
getAdapterMapEntry(adapterConf:
|
|
1370
|
-
|
|
1509
|
+
getAdapterMapEntry(adapterConf: {
|
|
1510
|
+
[x: string]: unknown;
|
|
1511
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1512
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1513
|
+
[x: string]: unknown;
|
|
1514
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1371
1515
|
[x: string]: string | undefined;
|
|
1372
1516
|
}>;
|
|
1373
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1517
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1518
|
+
[x: string]: unknown;
|
|
1519
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1374
1520
|
[x: string]: string | undefined;
|
|
1375
|
-
}>;
|
|
1521
|
+
}>; /**
|
|
1522
|
+
* #getter
|
|
1523
|
+
*/
|
|
1376
1524
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
1377
1525
|
addAssembly(configuration: any): void;
|
|
1378
1526
|
replaceAssembly(idx: number, configuration: any): void;
|
|
@@ -1445,11 +1593,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1445
1593
|
load(): Promise<void>;
|
|
1446
1594
|
loadPre(): Promise<void>;
|
|
1447
1595
|
} & {
|
|
1448
|
-
getAdapterMapEntry(adapterConf:
|
|
1449
|
-
|
|
1596
|
+
getAdapterMapEntry(adapterConf: {
|
|
1597
|
+
[x: string]: unknown;
|
|
1598
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1599
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1600
|
+
[x: string]: unknown;
|
|
1601
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1450
1602
|
[x: string]: string | undefined;
|
|
1451
1603
|
}>;
|
|
1452
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1604
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1605
|
+
[x: string]: unknown;
|
|
1606
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1453
1607
|
[x: string]: string | undefined;
|
|
1454
1608
|
}>;
|
|
1455
1609
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
@@ -1473,11 +1627,13 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1473
1627
|
} & {
|
|
1474
1628
|
readonly initialized: boolean;
|
|
1475
1629
|
readonly name: string;
|
|
1630
|
+
/**
|
|
1631
|
+
* #getter
|
|
1632
|
+
* list of config connections and session connections
|
|
1633
|
+
*/
|
|
1476
1634
|
readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1477
1635
|
readonly aliases: string[];
|
|
1478
|
-
readonly displayName: string | undefined;
|
|
1479
|
-
* #action
|
|
1480
|
-
*/
|
|
1636
|
+
readonly displayName: string | undefined;
|
|
1481
1637
|
hasName(name: string): boolean;
|
|
1482
1638
|
readonly allAliases: string[];
|
|
1483
1639
|
readonly allRefNames: string[] | undefined;
|
|
@@ -1500,20 +1656,24 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1500
1656
|
}, lcAliases: {
|
|
1501
1657
|
[x: string]: string | undefined;
|
|
1502
1658
|
}): void;
|
|
1503
|
-
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1504
|
-
* #getter
|
|
1505
|
-
*/
|
|
1659
|
+
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1506
1660
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
1507
|
-
load(): Promise<void>;
|
|
1508
|
-
|
|
1509
|
-
* #getter
|
|
1661
|
+
load(): Promise<void>; /**
|
|
1662
|
+
* #method
|
|
1510
1663
|
*/
|
|
1664
|
+
loadPre(): Promise<void>;
|
|
1511
1665
|
} & {
|
|
1512
|
-
getAdapterMapEntry(adapterConf:
|
|
1513
|
-
|
|
1666
|
+
getAdapterMapEntry(adapterConf: {
|
|
1667
|
+
[x: string]: unknown;
|
|
1668
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1669
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1670
|
+
[x: string]: unknown;
|
|
1671
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1514
1672
|
[x: string]: string | undefined;
|
|
1515
1673
|
}>;
|
|
1516
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1674
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1675
|
+
[x: string]: unknown;
|
|
1676
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1517
1677
|
[x: string]: string | undefined;
|
|
1518
1678
|
}>;
|
|
1519
1679
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1562,18 +1722,20 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1562
1722
|
}): void;
|
|
1563
1723
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1564
1724
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
1565
|
-
load(): Promise<void>;
|
|
1566
|
-
* #action
|
|
1567
|
-
*/
|
|
1725
|
+
load(): Promise<void>;
|
|
1568
1726
|
loadPre(): Promise<void>;
|
|
1569
1727
|
} & {
|
|
1570
|
-
getAdapterMapEntry(adapterConf:
|
|
1571
|
-
|
|
1572
|
-
|
|
1573
|
-
getRefNameMapForAdapter(adapterConf:
|
|
1728
|
+
getAdapterMapEntry(adapterConf: {
|
|
1729
|
+
[x: string]: unknown;
|
|
1730
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1731
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1732
|
+
[x: string]: unknown;
|
|
1733
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1574
1734
|
[x: string]: string | undefined;
|
|
1575
1735
|
}>;
|
|
1576
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1736
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1737
|
+
[x: string]: unknown;
|
|
1738
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1577
1739
|
[x: string]: string | undefined;
|
|
1578
1740
|
}>;
|
|
1579
1741
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
@@ -1627,11 +1789,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1627
1789
|
load(): Promise<void>;
|
|
1628
1790
|
loadPre(): Promise<void>;
|
|
1629
1791
|
} & {
|
|
1630
|
-
getAdapterMapEntry(adapterConf:
|
|
1631
|
-
|
|
1792
|
+
getAdapterMapEntry(adapterConf: {
|
|
1793
|
+
[x: string]: unknown;
|
|
1794
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1795
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1796
|
+
[x: string]: unknown;
|
|
1797
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1632
1798
|
[x: string]: string | undefined;
|
|
1633
1799
|
}>;
|
|
1634
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1800
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1801
|
+
[x: string]: unknown;
|
|
1802
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1635
1803
|
[x: string]: string | undefined;
|
|
1636
1804
|
}>;
|
|
1637
1805
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1683,11 +1851,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1683
1851
|
load(): Promise<void>;
|
|
1684
1852
|
loadPre(): Promise<void>;
|
|
1685
1853
|
} & {
|
|
1686
|
-
getAdapterMapEntry(adapterConf:
|
|
1687
|
-
|
|
1854
|
+
getAdapterMapEntry(adapterConf: {
|
|
1855
|
+
[x: string]: unknown;
|
|
1856
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1857
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1858
|
+
[x: string]: unknown;
|
|
1859
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1688
1860
|
[x: string]: string | undefined;
|
|
1689
1861
|
}>;
|
|
1690
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1862
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1863
|
+
[x: string]: unknown;
|
|
1864
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1691
1865
|
[x: string]: string | undefined;
|
|
1692
1866
|
}>;
|
|
1693
1867
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
@@ -1748,11 +1922,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1748
1922
|
load(): Promise<void>;
|
|
1749
1923
|
loadPre(): Promise<void>;
|
|
1750
1924
|
} & {
|
|
1751
|
-
getAdapterMapEntry(adapterConf:
|
|
1752
|
-
|
|
1925
|
+
getAdapterMapEntry(adapterConf: {
|
|
1926
|
+
[x: string]: unknown;
|
|
1927
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1928
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1929
|
+
[x: string]: unknown;
|
|
1930
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1753
1931
|
[x: string]: string | undefined;
|
|
1754
1932
|
}>;
|
|
1755
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1933
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1934
|
+
[x: string]: unknown;
|
|
1935
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1756
1936
|
[x: string]: string | undefined;
|
|
1757
1937
|
}>;
|
|
1758
1938
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1804,21 +1984,31 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1804
1984
|
load(): Promise<void>;
|
|
1805
1985
|
loadPre(): Promise<void>;
|
|
1806
1986
|
} & {
|
|
1807
|
-
getAdapterMapEntry(adapterConf:
|
|
1808
|
-
|
|
1987
|
+
getAdapterMapEntry(adapterConf: {
|
|
1988
|
+
[x: string]: unknown;
|
|
1989
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1990
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1991
|
+
[x: string]: unknown;
|
|
1992
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1809
1993
|
[x: string]: string | undefined;
|
|
1810
1994
|
}>;
|
|
1811
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1995
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1996
|
+
[x: string]: unknown;
|
|
1997
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1812
1998
|
[x: string]: string | undefined;
|
|
1813
1999
|
}>;
|
|
1814
2000
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1815
|
-
getRefNameMapForAdapter(adapterConf:
|
|
2001
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2002
|
+
[x: string]: unknown;
|
|
2003
|
+
}, assemblyName: string | undefined, opts: {
|
|
1816
2004
|
signal?: AbortSignal | undefined;
|
|
1817
2005
|
sessionId: string;
|
|
1818
2006
|
}): Promise<{
|
|
1819
2007
|
[x: string]: string | undefined;
|
|
1820
2008
|
} | undefined>;
|
|
1821
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2009
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2010
|
+
[x: string]: unknown;
|
|
2011
|
+
}, assemblyName: string | undefined, opts: {
|
|
1822
2012
|
signal?: AbortSignal | undefined;
|
|
1823
2013
|
sessionId: string;
|
|
1824
2014
|
}): Promise<{
|
|
@@ -1873,16 +2063,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1873
2063
|
}): void;
|
|
1874
2064
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1875
2065
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
1876
|
-
load(): Promise<void>;
|
|
2066
|
+
load(): Promise<void>; /**
|
|
2067
|
+
* #property
|
|
2068
|
+
*/
|
|
1877
2069
|
loadPre(): Promise<void>;
|
|
1878
2070
|
} & {
|
|
1879
|
-
getAdapterMapEntry(adapterConf:
|
|
1880
|
-
|
|
2071
|
+
getAdapterMapEntry(adapterConf: {
|
|
2072
|
+
[x: string]: unknown;
|
|
2073
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2074
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2075
|
+
[x: string]: unknown;
|
|
2076
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1881
2077
|
[x: string]: string | undefined;
|
|
1882
2078
|
}>;
|
|
1883
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2079
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2080
|
+
[x: string]: unknown;
|
|
2081
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1884
2082
|
[x: string]: string | undefined;
|
|
1885
|
-
}>;
|
|
2083
|
+
}>; /**
|
|
2084
|
+
* #getter
|
|
2085
|
+
*/
|
|
1886
2086
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1887
2087
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1888
2088
|
}, {
|
|
@@ -1929,16 +2129,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1929
2129
|
}): void;
|
|
1930
2130
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1931
2131
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
1932
|
-
load(): Promise<void>;
|
|
2132
|
+
load(): Promise<void>; /**
|
|
2133
|
+
* #property
|
|
2134
|
+
*/
|
|
1933
2135
|
loadPre(): Promise<void>;
|
|
1934
2136
|
} & {
|
|
1935
|
-
getAdapterMapEntry(adapterConf:
|
|
1936
|
-
|
|
2137
|
+
getAdapterMapEntry(adapterConf: {
|
|
2138
|
+
[x: string]: unknown;
|
|
2139
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2140
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2141
|
+
[x: string]: unknown;
|
|
2142
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1937
2143
|
[x: string]: string | undefined;
|
|
1938
2144
|
}>;
|
|
1939
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2145
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2146
|
+
[x: string]: unknown;
|
|
2147
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1940
2148
|
[x: string]: string | undefined;
|
|
1941
|
-
}>;
|
|
2149
|
+
}>; /**
|
|
2150
|
+
* #getter
|
|
2151
|
+
*/
|
|
1942
2152
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
1943
2153
|
addAssembly(configuration: any): void;
|
|
1944
2154
|
replaceAssembly(idx: number, configuration: any): void;
|
|
@@ -2451,11 +2661,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2451
2661
|
load(): Promise<void>;
|
|
2452
2662
|
loadPre(): Promise<void>;
|
|
2453
2663
|
} & {
|
|
2454
|
-
getAdapterMapEntry(adapterConf:
|
|
2455
|
-
|
|
2664
|
+
getAdapterMapEntry(adapterConf: {
|
|
2665
|
+
[x: string]: unknown;
|
|
2666
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2667
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2668
|
+
[x: string]: unknown;
|
|
2669
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2456
2670
|
[x: string]: string | undefined;
|
|
2457
2671
|
}>;
|
|
2458
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2672
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2673
|
+
[x: string]: unknown;
|
|
2674
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2459
2675
|
[x: string]: string | undefined;
|
|
2460
2676
|
}>;
|
|
2461
2677
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
@@ -2507,11 +2723,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2507
2723
|
load(): Promise<void>;
|
|
2508
2724
|
loadPre(): Promise<void>;
|
|
2509
2725
|
} & {
|
|
2510
|
-
getAdapterMapEntry(adapterConf:
|
|
2511
|
-
|
|
2726
|
+
getAdapterMapEntry(adapterConf: {
|
|
2727
|
+
[x: string]: unknown;
|
|
2728
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2729
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2730
|
+
[x: string]: unknown;
|
|
2731
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2512
2732
|
[x: string]: string | undefined;
|
|
2513
2733
|
}>;
|
|
2514
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2734
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2735
|
+
[x: string]: unknown;
|
|
2736
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2515
2737
|
[x: string]: string | undefined;
|
|
2516
2738
|
}>;
|
|
2517
2739
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
@@ -2535,11 +2757,13 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2535
2757
|
} & {
|
|
2536
2758
|
readonly initialized: boolean;
|
|
2537
2759
|
readonly name: string;
|
|
2760
|
+
/**
|
|
2761
|
+
* #getter
|
|
2762
|
+
* list of config connections and session connections
|
|
2763
|
+
*/
|
|
2538
2764
|
readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
2539
2765
|
readonly aliases: string[];
|
|
2540
|
-
readonly displayName: string | undefined;
|
|
2541
|
-
* #action
|
|
2542
|
-
*/
|
|
2766
|
+
readonly displayName: string | undefined;
|
|
2543
2767
|
hasName(name: string): boolean;
|
|
2544
2768
|
readonly allAliases: string[];
|
|
2545
2769
|
readonly allRefNames: string[] | undefined;
|
|
@@ -2562,20 +2786,24 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2562
2786
|
}, lcAliases: {
|
|
2563
2787
|
[x: string]: string | undefined;
|
|
2564
2788
|
}): void;
|
|
2565
|
-
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2566
|
-
* #getter
|
|
2567
|
-
*/
|
|
2789
|
+
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2568
2790
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
2569
|
-
load(): Promise<void>;
|
|
2570
|
-
|
|
2571
|
-
* #getter
|
|
2791
|
+
load(): Promise<void>; /**
|
|
2792
|
+
* #method
|
|
2572
2793
|
*/
|
|
2794
|
+
loadPre(): Promise<void>;
|
|
2573
2795
|
} & {
|
|
2574
|
-
getAdapterMapEntry(adapterConf:
|
|
2575
|
-
|
|
2796
|
+
getAdapterMapEntry(adapterConf: {
|
|
2797
|
+
[x: string]: unknown;
|
|
2798
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2799
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2800
|
+
[x: string]: unknown;
|
|
2801
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2576
2802
|
[x: string]: string | undefined;
|
|
2577
2803
|
}>;
|
|
2578
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2804
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2805
|
+
[x: string]: unknown;
|
|
2806
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2579
2807
|
[x: string]: string | undefined;
|
|
2580
2808
|
}>;
|
|
2581
2809
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -2624,18 +2852,20 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2624
2852
|
}): void;
|
|
2625
2853
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2626
2854
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
2627
|
-
load(): Promise<void>;
|
|
2628
|
-
* #action
|
|
2629
|
-
*/
|
|
2855
|
+
load(): Promise<void>;
|
|
2630
2856
|
loadPre(): Promise<void>;
|
|
2631
2857
|
} & {
|
|
2632
|
-
getAdapterMapEntry(adapterConf:
|
|
2633
|
-
|
|
2634
|
-
|
|
2635
|
-
getRefNameMapForAdapter(adapterConf:
|
|
2858
|
+
getAdapterMapEntry(adapterConf: {
|
|
2859
|
+
[x: string]: unknown;
|
|
2860
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2861
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2862
|
+
[x: string]: unknown;
|
|
2863
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2636
2864
|
[x: string]: string | undefined;
|
|
2637
2865
|
}>;
|
|
2638
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2866
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2867
|
+
[x: string]: unknown;
|
|
2868
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2639
2869
|
[x: string]: string | undefined;
|
|
2640
2870
|
}>;
|
|
2641
2871
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
@@ -2689,11 +2919,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2689
2919
|
load(): Promise<void>;
|
|
2690
2920
|
loadPre(): Promise<void>;
|
|
2691
2921
|
} & {
|
|
2692
|
-
getAdapterMapEntry(adapterConf:
|
|
2693
|
-
|
|
2922
|
+
getAdapterMapEntry(adapterConf: {
|
|
2923
|
+
[x: string]: unknown;
|
|
2924
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2925
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2926
|
+
[x: string]: unknown;
|
|
2927
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2694
2928
|
[x: string]: string | undefined;
|
|
2695
2929
|
}>;
|
|
2696
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2930
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2931
|
+
[x: string]: unknown;
|
|
2932
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2697
2933
|
[x: string]: string | undefined;
|
|
2698
2934
|
}>;
|
|
2699
2935
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -2745,11 +2981,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2745
2981
|
load(): Promise<void>;
|
|
2746
2982
|
loadPre(): Promise<void>;
|
|
2747
2983
|
} & {
|
|
2748
|
-
getAdapterMapEntry(adapterConf:
|
|
2749
|
-
|
|
2984
|
+
getAdapterMapEntry(adapterConf: {
|
|
2985
|
+
[x: string]: unknown;
|
|
2986
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2987
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
2988
|
+
[x: string]: unknown;
|
|
2989
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2750
2990
|
[x: string]: string | undefined;
|
|
2751
2991
|
}>;
|
|
2752
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
2992
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2993
|
+
[x: string]: unknown;
|
|
2994
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2753
2995
|
[x: string]: string | undefined;
|
|
2754
2996
|
}>;
|
|
2755
2997
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
@@ -2810,11 +3052,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2810
3052
|
load(): Promise<void>;
|
|
2811
3053
|
loadPre(): Promise<void>;
|
|
2812
3054
|
} & {
|
|
2813
|
-
getAdapterMapEntry(adapterConf:
|
|
2814
|
-
|
|
3055
|
+
getAdapterMapEntry(adapterConf: {
|
|
3056
|
+
[x: string]: unknown;
|
|
3057
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3058
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3059
|
+
[x: string]: unknown;
|
|
3060
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2815
3061
|
[x: string]: string | undefined;
|
|
2816
3062
|
}>;
|
|
2817
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3063
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3064
|
+
[x: string]: unknown;
|
|
3065
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2818
3066
|
[x: string]: string | undefined;
|
|
2819
3067
|
}>;
|
|
2820
3068
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -2866,21 +3114,31 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2866
3114
|
load(): Promise<void>;
|
|
2867
3115
|
loadPre(): Promise<void>;
|
|
2868
3116
|
} & {
|
|
2869
|
-
getAdapterMapEntry(adapterConf:
|
|
2870
|
-
|
|
3117
|
+
getAdapterMapEntry(adapterConf: {
|
|
3118
|
+
[x: string]: unknown;
|
|
3119
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3120
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3121
|
+
[x: string]: unknown;
|
|
3122
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2871
3123
|
[x: string]: string | undefined;
|
|
2872
3124
|
}>;
|
|
2873
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3125
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3126
|
+
[x: string]: unknown;
|
|
3127
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2874
3128
|
[x: string]: string | undefined;
|
|
2875
3129
|
}>;
|
|
2876
3130
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
2877
|
-
getRefNameMapForAdapter(adapterConf:
|
|
3131
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3132
|
+
[x: string]: unknown;
|
|
3133
|
+
}, assemblyName: string | undefined, opts: {
|
|
2878
3134
|
signal?: AbortSignal | undefined;
|
|
2879
3135
|
sessionId: string;
|
|
2880
3136
|
}): Promise<{
|
|
2881
3137
|
[x: string]: string | undefined;
|
|
2882
3138
|
} | undefined>;
|
|
2883
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3139
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3140
|
+
[x: string]: unknown;
|
|
3141
|
+
}, assemblyName: string | undefined, opts: {
|
|
2884
3142
|
signal?: AbortSignal | undefined;
|
|
2885
3143
|
sessionId: string;
|
|
2886
3144
|
}): Promise<{
|
|
@@ -2935,16 +3193,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2935
3193
|
}): void;
|
|
2936
3194
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2937
3195
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
2938
|
-
load(): Promise<void>;
|
|
3196
|
+
load(): Promise<void>; /**
|
|
3197
|
+
* #property
|
|
3198
|
+
*/
|
|
2939
3199
|
loadPre(): Promise<void>;
|
|
2940
3200
|
} & {
|
|
2941
|
-
getAdapterMapEntry(adapterConf:
|
|
2942
|
-
|
|
3201
|
+
getAdapterMapEntry(adapterConf: {
|
|
3202
|
+
[x: string]: unknown;
|
|
3203
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3204
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3205
|
+
[x: string]: unknown;
|
|
3206
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2943
3207
|
[x: string]: string | undefined;
|
|
2944
3208
|
}>;
|
|
2945
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3209
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3210
|
+
[x: string]: unknown;
|
|
3211
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2946
3212
|
[x: string]: string | undefined;
|
|
2947
|
-
}>;
|
|
3213
|
+
}>; /**
|
|
3214
|
+
* #getter
|
|
3215
|
+
*/
|
|
2948
3216
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
2949
3217
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
2950
3218
|
}, {
|
|
@@ -2991,16 +3259,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2991
3259
|
}): void;
|
|
2992
3260
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2993
3261
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
2994
|
-
load(): Promise<void>;
|
|
3262
|
+
load(): Promise<void>; /**
|
|
3263
|
+
* #property
|
|
3264
|
+
*/
|
|
2995
3265
|
loadPre(): Promise<void>;
|
|
2996
3266
|
} & {
|
|
2997
|
-
getAdapterMapEntry(adapterConf:
|
|
2998
|
-
|
|
3267
|
+
getAdapterMapEntry(adapterConf: {
|
|
3268
|
+
[x: string]: unknown;
|
|
3269
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3270
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3271
|
+
[x: string]: unknown;
|
|
3272
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2999
3273
|
[x: string]: string | undefined;
|
|
3000
3274
|
}>;
|
|
3001
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3275
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3276
|
+
[x: string]: unknown;
|
|
3277
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3002
3278
|
[x: string]: string | undefined;
|
|
3003
|
-
}>;
|
|
3279
|
+
}>; /**
|
|
3280
|
+
* #getter
|
|
3281
|
+
*/
|
|
3004
3282
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
3005
3283
|
addAssembly(configuration: any): void;
|
|
3006
3284
|
replaceAssembly(idx: number, configuration: any): void;
|
|
@@ -3054,11 +3332,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3054
3332
|
load(): Promise<void>;
|
|
3055
3333
|
loadPre(): Promise<void>;
|
|
3056
3334
|
} & {
|
|
3057
|
-
getAdapterMapEntry(adapterConf:
|
|
3058
|
-
|
|
3335
|
+
getAdapterMapEntry(adapterConf: {
|
|
3336
|
+
[x: string]: unknown;
|
|
3337
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3338
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3339
|
+
[x: string]: unknown;
|
|
3340
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3059
3341
|
[x: string]: string | undefined;
|
|
3060
3342
|
}>;
|
|
3061
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3343
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3344
|
+
[x: string]: unknown;
|
|
3345
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3062
3346
|
[x: string]: string | undefined;
|
|
3063
3347
|
}>;
|
|
3064
3348
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
@@ -3082,11 +3366,13 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3082
3366
|
} & {
|
|
3083
3367
|
readonly initialized: boolean;
|
|
3084
3368
|
readonly name: string;
|
|
3369
|
+
/**
|
|
3370
|
+
* #getter
|
|
3371
|
+
* list of config connections and session connections
|
|
3372
|
+
*/
|
|
3085
3373
|
readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
3086
3374
|
readonly aliases: string[];
|
|
3087
|
-
readonly displayName: string | undefined;
|
|
3088
|
-
* #action
|
|
3089
|
-
*/
|
|
3375
|
+
readonly displayName: string | undefined;
|
|
3090
3376
|
hasName(name: string): boolean;
|
|
3091
3377
|
readonly allAliases: string[];
|
|
3092
3378
|
readonly allRefNames: string[] | undefined;
|
|
@@ -3109,20 +3395,24 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3109
3395
|
}, lcAliases: {
|
|
3110
3396
|
[x: string]: string | undefined;
|
|
3111
3397
|
}): void;
|
|
3112
|
-
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3113
|
-
* #getter
|
|
3114
|
-
*/
|
|
3398
|
+
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3115
3399
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
3116
|
-
load(): Promise<void>;
|
|
3117
|
-
|
|
3118
|
-
* #getter
|
|
3400
|
+
load(): Promise<void>; /**
|
|
3401
|
+
* #method
|
|
3119
3402
|
*/
|
|
3403
|
+
loadPre(): Promise<void>;
|
|
3120
3404
|
} & {
|
|
3121
|
-
getAdapterMapEntry(adapterConf:
|
|
3122
|
-
|
|
3405
|
+
getAdapterMapEntry(adapterConf: {
|
|
3406
|
+
[x: string]: unknown;
|
|
3407
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3408
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3409
|
+
[x: string]: unknown;
|
|
3410
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3123
3411
|
[x: string]: string | undefined;
|
|
3124
3412
|
}>;
|
|
3125
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3413
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3414
|
+
[x: string]: unknown;
|
|
3415
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3126
3416
|
[x: string]: string | undefined;
|
|
3127
3417
|
}>;
|
|
3128
3418
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -3171,18 +3461,20 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3171
3461
|
}): void;
|
|
3172
3462
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3173
3463
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
3174
|
-
load(): Promise<void>;
|
|
3175
|
-
* #action
|
|
3176
|
-
*/
|
|
3464
|
+
load(): Promise<void>;
|
|
3177
3465
|
loadPre(): Promise<void>;
|
|
3178
3466
|
} & {
|
|
3179
|
-
getAdapterMapEntry(adapterConf:
|
|
3180
|
-
|
|
3181
|
-
|
|
3182
|
-
getRefNameMapForAdapter(adapterConf:
|
|
3467
|
+
getAdapterMapEntry(adapterConf: {
|
|
3468
|
+
[x: string]: unknown;
|
|
3469
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3470
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3471
|
+
[x: string]: unknown;
|
|
3472
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3183
3473
|
[x: string]: string | undefined;
|
|
3184
3474
|
}>;
|
|
3185
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3475
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3476
|
+
[x: string]: unknown;
|
|
3477
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3186
3478
|
[x: string]: string | undefined;
|
|
3187
3479
|
}>;
|
|
3188
3480
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
@@ -3236,11 +3528,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3236
3528
|
load(): Promise<void>;
|
|
3237
3529
|
loadPre(): Promise<void>;
|
|
3238
3530
|
} & {
|
|
3239
|
-
getAdapterMapEntry(adapterConf:
|
|
3240
|
-
|
|
3531
|
+
getAdapterMapEntry(adapterConf: {
|
|
3532
|
+
[x: string]: unknown;
|
|
3533
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3534
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3535
|
+
[x: string]: unknown;
|
|
3536
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3241
3537
|
[x: string]: string | undefined;
|
|
3242
3538
|
}>;
|
|
3243
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3539
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3540
|
+
[x: string]: unknown;
|
|
3541
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3244
3542
|
[x: string]: string | undefined;
|
|
3245
3543
|
}>;
|
|
3246
3544
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -3292,11 +3590,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3292
3590
|
load(): Promise<void>;
|
|
3293
3591
|
loadPre(): Promise<void>;
|
|
3294
3592
|
} & {
|
|
3295
|
-
getAdapterMapEntry(adapterConf:
|
|
3296
|
-
|
|
3593
|
+
getAdapterMapEntry(adapterConf: {
|
|
3594
|
+
[x: string]: unknown;
|
|
3595
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3596
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3597
|
+
[x: string]: unknown;
|
|
3598
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3297
3599
|
[x: string]: string | undefined;
|
|
3298
3600
|
}>;
|
|
3299
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3601
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3602
|
+
[x: string]: unknown;
|
|
3603
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3300
3604
|
[x: string]: string | undefined;
|
|
3301
3605
|
}>;
|
|
3302
3606
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
@@ -3357,11 +3661,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3357
3661
|
load(): Promise<void>;
|
|
3358
3662
|
loadPre(): Promise<void>;
|
|
3359
3663
|
} & {
|
|
3360
|
-
getAdapterMapEntry(adapterConf:
|
|
3361
|
-
|
|
3664
|
+
getAdapterMapEntry(adapterConf: {
|
|
3665
|
+
[x: string]: unknown;
|
|
3666
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3667
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3668
|
+
[x: string]: unknown;
|
|
3669
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3362
3670
|
[x: string]: string | undefined;
|
|
3363
3671
|
}>;
|
|
3364
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3672
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3673
|
+
[x: string]: unknown;
|
|
3674
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3365
3675
|
[x: string]: string | undefined;
|
|
3366
3676
|
}>;
|
|
3367
3677
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -3413,21 +3723,31 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3413
3723
|
load(): Promise<void>;
|
|
3414
3724
|
loadPre(): Promise<void>;
|
|
3415
3725
|
} & {
|
|
3416
|
-
getAdapterMapEntry(adapterConf:
|
|
3417
|
-
|
|
3726
|
+
getAdapterMapEntry(adapterConf: {
|
|
3727
|
+
[x: string]: unknown;
|
|
3728
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3729
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3730
|
+
[x: string]: unknown;
|
|
3731
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3418
3732
|
[x: string]: string | undefined;
|
|
3419
3733
|
}>;
|
|
3420
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3734
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3735
|
+
[x: string]: unknown;
|
|
3736
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3421
3737
|
[x: string]: string | undefined;
|
|
3422
3738
|
}>;
|
|
3423
3739
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
3424
|
-
getRefNameMapForAdapter(adapterConf:
|
|
3740
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3741
|
+
[x: string]: unknown;
|
|
3742
|
+
}, assemblyName: string | undefined, opts: {
|
|
3425
3743
|
signal?: AbortSignal | undefined;
|
|
3426
3744
|
sessionId: string;
|
|
3427
3745
|
}): Promise<{
|
|
3428
3746
|
[x: string]: string | undefined;
|
|
3429
3747
|
} | undefined>;
|
|
3430
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3748
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3749
|
+
[x: string]: unknown;
|
|
3750
|
+
}, assemblyName: string | undefined, opts: {
|
|
3431
3751
|
signal?: AbortSignal | undefined;
|
|
3432
3752
|
sessionId: string;
|
|
3433
3753
|
}): Promise<{
|
|
@@ -3482,16 +3802,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3482
3802
|
}): void;
|
|
3483
3803
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3484
3804
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
3485
|
-
load(): Promise<void>;
|
|
3805
|
+
load(): Promise<void>; /**
|
|
3806
|
+
* #property
|
|
3807
|
+
*/
|
|
3486
3808
|
loadPre(): Promise<void>;
|
|
3487
3809
|
} & {
|
|
3488
|
-
getAdapterMapEntry(adapterConf:
|
|
3489
|
-
|
|
3810
|
+
getAdapterMapEntry(adapterConf: {
|
|
3811
|
+
[x: string]: unknown;
|
|
3812
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3813
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3814
|
+
[x: string]: unknown;
|
|
3815
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3490
3816
|
[x: string]: string | undefined;
|
|
3491
3817
|
}>;
|
|
3492
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3818
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3819
|
+
[x: string]: unknown;
|
|
3820
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3493
3821
|
[x: string]: string | undefined;
|
|
3494
|
-
}>;
|
|
3822
|
+
}>; /**
|
|
3823
|
+
* #getter
|
|
3824
|
+
*/
|
|
3495
3825
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
3496
3826
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
3497
3827
|
}, {
|
|
@@ -3538,16 +3868,26 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3538
3868
|
}): void;
|
|
3539
3869
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3540
3870
|
setLoadingP(p?: Promise<void> | undefined): void;
|
|
3541
|
-
load(): Promise<void>;
|
|
3871
|
+
load(): Promise<void>; /**
|
|
3872
|
+
* #property
|
|
3873
|
+
*/
|
|
3542
3874
|
loadPre(): Promise<void>;
|
|
3543
3875
|
} & {
|
|
3544
|
-
getAdapterMapEntry(adapterConf:
|
|
3545
|
-
|
|
3876
|
+
getAdapterMapEntry(adapterConf: {
|
|
3877
|
+
[x: string]: unknown;
|
|
3878
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3879
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
3880
|
+
[x: string]: unknown;
|
|
3881
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3546
3882
|
[x: string]: string | undefined;
|
|
3547
3883
|
}>;
|
|
3548
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
3884
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3885
|
+
[x: string]: unknown;
|
|
3886
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3549
3887
|
[x: string]: string | undefined;
|
|
3550
|
-
}>;
|
|
3888
|
+
}>; /**
|
|
3889
|
+
* #getter
|
|
3890
|
+
*/
|
|
3551
3891
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
3552
3892
|
addAssembly(configuration: any): void;
|
|
3553
3893
|
replaceAssembly(idx: number, configuration: any): void;
|