@jbrowse/web-core 2.7.0 → 2.7.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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@@ -67,6 +67,12 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
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}, {
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connect(_arg: {
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[x: string]: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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setSubschema(slotName: string, data: unknown): any;
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
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} & {
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afterAttach(): void;
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addTrackConf(trackConf: {
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[x: string]: any;
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@@ -169,7 +175,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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hideUris: {
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type: string;
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defaultValue: boolean;
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};
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}; /**
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* #getter
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*/
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>>, callbacks: Function[], dereferenceTypeCount: Record<string, number>): void;
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} & {
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@@ -212,6 +220,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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afterAttach(): void;
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} & {
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selection: unknown;
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hovered: unknown;
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} & {
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readonly root: {
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jbrowse: any;
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@@ -270,9 +279,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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* #getter
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*/
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}>;
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getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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@@ -328,9 +335,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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* #getter
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*/
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}>;
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getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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@@ -357,7 +362,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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readonly name: string;
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readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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readonly aliases: string[];
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readonly displayName: string | undefined;
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readonly displayName: string | undefined; /**
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* #action
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*/
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hasName(name: string): boolean;
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readonly allAliases: string[];
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readonly allRefNames: string[] | undefined;
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@@ -875,9 +882,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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* #getter
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*/
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}>;
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getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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@@ -904,7 +909,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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readonly name: string;
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readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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readonly aliases: string[];
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readonly displayName: string | undefined;
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readonly displayName: string | undefined; /**
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* #action
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*/
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hasName(name: string): boolean;
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readonly allAliases: string[];
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readonly allRefNames: string[] | undefined;
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@@ -1441,9 +1448,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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* #getter
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*/
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}>;
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getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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@@ -1470,7 +1475,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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readonly name: string;
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readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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readonly aliases: string[];
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readonly displayName: string | undefined;
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readonly displayName: string | undefined; /**
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* #action
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*/
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hasName(name: string): boolean;
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readonly allAliases: string[];
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readonly allRefNames: string[] | undefined;
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@@ -1993,6 +2000,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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} & {
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setSelection(thing: unknown): void;
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clearSelection(): void;
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setHovered(thing: unknown): void;
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} & {
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moveViewUp(id: string): void;
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moveViewDown(id: string): void;
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@@ -2182,6 +2190,12 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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connect(_arg: {
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[x: string]: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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setSubschema(slotName: string, data: unknown): any;
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
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} & {
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afterAttach(): void;
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addTrackConf(trackConf: {
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[x: string]: any;
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@@ -2215,6 +2229,12 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
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}, {
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connect(_arg: {
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[x: string]: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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setSubschema(slotName: string, data: unknown): any;
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
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} & {
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afterAttach(): void;
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addTrackConf(trackConf: {
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[x: string]: any;
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@@ -2278,6 +2298,18 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
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} & {
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setFocusedViewId(viewId: string): void;
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} & {
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/**
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* #volatile
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*/
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sessionThemeName: string;
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/**
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* #volatile
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* this is the current "task" that is being performed in the UI.
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* this is usually an object of the form
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* `{ taskName: "configure", target: thing_being_configured }`
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*/
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task: undefined;
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} & {
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/**
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* #getter
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@@ -2346,18 +2378,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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* #action
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*/
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setName(str: string): void;
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} & {
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/**
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* #volatile
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sessionThemeName: string;
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* #volatile
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* this is the current "task" that is being performed in the UI.
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* this is usually an object of the form
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* `{ taskName: "configure", target: thing_being_configured }`
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task: undefined;
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} & {
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/**
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* #getter
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@@ -2434,9 +2454,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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[x: string]: string | undefined;
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}>;
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* #getter
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}>;
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getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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@@ -2492,9 +2510,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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* #getter
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}>;
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getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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@@ -2521,7 +2537,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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readonly name: string;
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readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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readonly aliases: string[];
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readonly displayName: string | undefined; /**
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* #action
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*/
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hasName(name: string): boolean;
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readonly allRefNames: string[] | undefined;
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getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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* #getter
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}>;
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
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}, {
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connect(_arg: {
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[x: string]: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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setSubschema(slotName: string, data: unknown): any;
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
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} & {
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afterAttach(): void;
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addTrackConf(trackConf: {
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
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}, {
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connect(_arg: {
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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setSubschema(slotName: string, data: unknown): any;
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
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} & {
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afterAttach(): void;
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addTrackConf(trackConf: {
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[x: string]: any;
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sessionPlugins: mobx_state_tree_1.types.array(mobx_state_tree_1.types.frozen()),
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.volatile(( /* self */) => ({
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/**
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* #volatile
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*/
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sessionThemeName: (0, util_1.localStorageGetItem)('themeName') || 'default',
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/**
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* #volatile
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* this is the current "task" that is being performed in the UI.
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* this is usually an object of the form
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connect(_arg: {
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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setSubschema(slotName: string, data: unknown): any;
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
|
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} & {
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|
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|
addTrackConf(trackConf: {
|
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[x: string]: any;
|
|
@@ -169,7 +175,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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type: string;
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|
-
};
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}; /**
|
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* #getter
|
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*/
|
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
|
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>>, callbacks: Function[], dereferenceTypeCount: Record<string, number>): void;
|
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|
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|
|
@@ -212,6 +220,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
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|
|
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|
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selection: unknown;
|
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|
+
hovered: unknown;
|
|
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|
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|
|
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|
readonly root: {
|
|
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|
jbrowse: any;
|
|
@@ -270,9 +279,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
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|
getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
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|
getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
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|
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|
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}>;
|
|
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|
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* #getter
|
|
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|
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*/
|
|
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|
+
}>;
|
|
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|
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|
|
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|
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|
|
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|
}>;
|
|
@@ -328,9 +335,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
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|
getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
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|
getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
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|
[x: string]: string | undefined;
|
|
331
|
-
}>;
|
|
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|
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* #getter
|
|
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|
-
*/
|
|
338
|
+
}>;
|
|
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339
|
getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
335
340
|
[x: string]: string | undefined;
|
|
336
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|
}>;
|
|
@@ -357,7 +362,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
357
362
|
readonly name: string;
|
|
358
363
|
readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
359
364
|
readonly aliases: string[];
|
|
360
|
-
readonly displayName: string | undefined;
|
|
365
|
+
readonly displayName: string | undefined; /**
|
|
366
|
+
* #action
|
|
367
|
+
*/
|
|
361
368
|
hasName(name: string): boolean;
|
|
362
369
|
readonly allAliases: string[];
|
|
363
370
|
readonly allRefNames: string[] | undefined;
|
|
@@ -875,9 +882,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
875
882
|
getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
876
883
|
getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
877
884
|
[x: string]: string | undefined;
|
|
878
|
-
}>;
|
|
879
|
-
* #getter
|
|
880
|
-
*/
|
|
885
|
+
}>;
|
|
881
886
|
getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
882
887
|
[x: string]: string | undefined;
|
|
883
888
|
}>;
|
|
@@ -904,7 +909,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
904
909
|
readonly name: string;
|
|
905
910
|
readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
906
911
|
readonly aliases: string[];
|
|
907
|
-
readonly displayName: string | undefined;
|
|
912
|
+
readonly displayName: string | undefined; /**
|
|
913
|
+
* #action
|
|
914
|
+
*/
|
|
908
915
|
hasName(name: string): boolean;
|
|
909
916
|
readonly allAliases: string[];
|
|
910
917
|
readonly allRefNames: string[] | undefined;
|
|
@@ -1441,9 +1448,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1441
1448
|
getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1442
1449
|
getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1443
1450
|
[x: string]: string | undefined;
|
|
1444
|
-
}>;
|
|
1445
|
-
* #getter
|
|
1446
|
-
*/
|
|
1451
|
+
}>;
|
|
1447
1452
|
getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1448
1453
|
[x: string]: string | undefined;
|
|
1449
1454
|
}>;
|
|
@@ -1470,7 +1475,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1470
1475
|
readonly name: string;
|
|
1471
1476
|
readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1472
1477
|
readonly aliases: string[];
|
|
1473
|
-
readonly displayName: string | undefined;
|
|
1478
|
+
readonly displayName: string | undefined; /**
|
|
1479
|
+
* #action
|
|
1480
|
+
*/
|
|
1474
1481
|
hasName(name: string): boolean;
|
|
1475
1482
|
readonly allAliases: string[];
|
|
1476
1483
|
readonly allRefNames: string[] | undefined;
|
|
@@ -1993,6 +2000,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
1993
2000
|
} & {
|
|
1994
2001
|
setSelection(thing: unknown): void;
|
|
1995
2002
|
clearSelection(): void;
|
|
2003
|
+
setHovered(thing: unknown): void;
|
|
1996
2004
|
} & {
|
|
1997
2005
|
moveViewUp(id: string): void;
|
|
1998
2006
|
moveViewDown(id: string): void;
|
|
@@ -2182,6 +2190,12 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2182
2190
|
};
|
|
2183
2191
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>;
|
|
2184
2192
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2193
|
+
connect(_arg: {
|
|
2194
|
+
[x: string]: any;
|
|
2195
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2196
|
+
setSubschema(slotName: string, data: unknown): any;
|
|
2197
|
+
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
|
|
2198
|
+
} & {
|
|
2185
2199
|
afterAttach(): void;
|
|
2186
2200
|
addTrackConf(trackConf: {
|
|
2187
2201
|
[x: string]: any;
|
|
@@ -2215,6 +2229,12 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2215
2229
|
};
|
|
2216
2230
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
|
|
2217
2231
|
}, {
|
|
2232
|
+
connect(_arg: {
|
|
2233
|
+
[x: string]: any;
|
|
2234
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2235
|
+
setSubschema(slotName: string, data: unknown): any;
|
|
2236
|
+
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
|
|
2237
|
+
} & {
|
|
2218
2238
|
afterAttach(): void;
|
|
2219
2239
|
addTrackConf(trackConf: {
|
|
2220
2240
|
[x: string]: any;
|
|
@@ -2278,6 +2298,18 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2278
2298
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
|
|
2279
2299
|
} & {
|
|
2280
2300
|
setFocusedViewId(viewId: string): void;
|
|
2301
|
+
} & {
|
|
2302
|
+
/**
|
|
2303
|
+
* #volatile
|
|
2304
|
+
*/
|
|
2305
|
+
sessionThemeName: string;
|
|
2306
|
+
/**
|
|
2307
|
+
* #volatile
|
|
2308
|
+
* this is the current "task" that is being performed in the UI.
|
|
2309
|
+
* this is usually an object of the form
|
|
2310
|
+
* `{ taskName: "configure", target: thing_being_configured }`
|
|
2311
|
+
*/
|
|
2312
|
+
task: undefined;
|
|
2281
2313
|
} & {
|
|
2282
2314
|
/**
|
|
2283
2315
|
* #getter
|
|
@@ -2346,18 +2378,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2346
2378
|
* #action
|
|
2347
2379
|
*/
|
|
2348
2380
|
setName(str: string): void;
|
|
2349
|
-
} & {
|
|
2350
|
-
/**
|
|
2351
|
-
* #volatile
|
|
2352
|
-
*/
|
|
2353
|
-
sessionThemeName: string;
|
|
2354
|
-
/**
|
|
2355
|
-
* #volatile
|
|
2356
|
-
* this is the current "task" that is being performed in the UI.
|
|
2357
|
-
* this is usually an object of the form
|
|
2358
|
-
* `{ taskName: "configure", target: thing_being_configured }`
|
|
2359
|
-
*/
|
|
2360
|
-
task: undefined;
|
|
2361
2381
|
} & {
|
|
2362
2382
|
/**
|
|
2363
2383
|
* #getter
|
|
@@ -2434,9 +2454,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2434
2454
|
getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2435
2455
|
getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2436
2456
|
[x: string]: string | undefined;
|
|
2437
|
-
}>;
|
|
2438
|
-
* #getter
|
|
2439
|
-
*/
|
|
2457
|
+
}>;
|
|
2440
2458
|
getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2441
2459
|
[x: string]: string | undefined;
|
|
2442
2460
|
}>;
|
|
@@ -2492,9 +2510,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2492
2510
|
getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
2493
2511
|
getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2494
2512
|
[x: string]: string | undefined;
|
|
2495
|
-
}>;
|
|
2496
|
-
* #getter
|
|
2497
|
-
*/
|
|
2513
|
+
}>;
|
|
2498
2514
|
getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
2499
2515
|
[x: string]: string | undefined;
|
|
2500
2516
|
}>;
|
|
@@ -2521,7 +2537,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
2521
2537
|
readonly name: string;
|
|
2522
2538
|
readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
2523
2539
|
readonly aliases: string[];
|
|
2524
|
-
readonly displayName: string | undefined;
|
|
2540
|
+
readonly displayName: string | undefined; /**
|
|
2541
|
+
* #action
|
|
2542
|
+
*/
|
|
2525
2543
|
hasName(name: string): boolean;
|
|
2526
2544
|
readonly allAliases: string[];
|
|
2527
2545
|
readonly allRefNames: string[] | undefined;
|
|
@@ -3039,9 +3057,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3039
3057
|
getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
3040
3058
|
getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3041
3059
|
[x: string]: string | undefined;
|
|
3042
|
-
}>;
|
|
3043
|
-
* #getter
|
|
3044
|
-
*/
|
|
3060
|
+
}>;
|
|
3045
3061
|
getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
3046
3062
|
[x: string]: string | undefined;
|
|
3047
3063
|
}>;
|
|
@@ -3068,7 +3084,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3068
3084
|
readonly name: string;
|
|
3069
3085
|
readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
3070
3086
|
readonly aliases: string[];
|
|
3071
|
-
readonly displayName: string | undefined;
|
|
3087
|
+
readonly displayName: string | undefined; /**
|
|
3088
|
+
* #action
|
|
3089
|
+
*/
|
|
3072
3090
|
hasName(name: string): boolean;
|
|
3073
3091
|
readonly allAliases: string[];
|
|
3074
3092
|
readonly allRefNames: string[] | undefined;
|
|
@@ -3634,6 +3652,12 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3634
3652
|
};
|
|
3635
3653
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
|
|
3636
3654
|
}, {
|
|
3655
|
+
connect(_arg: {
|
|
3656
|
+
[x: string]: any;
|
|
3657
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3658
|
+
setSubschema(slotName: string, data: unknown): any;
|
|
3659
|
+
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
|
|
3660
|
+
} & {
|
|
3637
3661
|
afterAttach(): void;
|
|
3638
3662
|
addTrackConf(trackConf: {
|
|
3639
3663
|
[x: string]: any;
|
|
@@ -3751,6 +3775,12 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
3751
3775
|
};
|
|
3752
3776
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
|
|
3753
3777
|
}, {
|
|
3778
|
+
connect(_arg: {
|
|
3779
|
+
[x: string]: any;
|
|
3780
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3781
|
+
setSubschema(slotName: string, data: unknown): any;
|
|
3782
|
+
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
|
|
3783
|
+
} & {
|
|
3754
3784
|
afterAttach(): void;
|
|
3755
3785
|
addTrackConf(trackConf: {
|
|
3756
3786
|
[x: string]: any;
|
|
@@ -29,6 +29,19 @@ export function BaseWebSession({ pluginManager, assemblyConfigSchema, }) {
|
|
|
29
29
|
*/
|
|
30
30
|
sessionPlugins: types.array(types.frozen()),
|
|
31
31
|
})
|
|
32
|
+
.volatile(( /* self */) => ({
|
|
33
|
+
/**
|
|
34
|
+
* #volatile
|
|
35
|
+
*/
|
|
36
|
+
sessionThemeName: localStorageGetItem('themeName') || 'default',
|
|
37
|
+
/**
|
|
38
|
+
* #volatile
|
|
39
|
+
* this is the current "task" that is being performed in the UI.
|
|
40
|
+
* this is usually an object of the form
|
|
41
|
+
* `{ taskName: "configure", target: thing_being_configured }`
|
|
42
|
+
*/
|
|
43
|
+
task: undefined,
|
|
44
|
+
}))
|
|
32
45
|
.views(self => ({
|
|
33
46
|
/**
|
|
34
47
|
* #getter
|
|
@@ -66,19 +79,6 @@ export function BaseWebSession({ pluginManager, assemblyConfigSchema, }) {
|
|
|
66
79
|
setName(str) {
|
|
67
80
|
self.name = str;
|
|
68
81
|
},
|
|
69
|
-
}))
|
|
70
|
-
.volatile(( /* self */) => ({
|
|
71
|
-
/**
|
|
72
|
-
* #volatile
|
|
73
|
-
*/
|
|
74
|
-
sessionThemeName: localStorageGetItem('themeName') || 'default',
|
|
75
|
-
/**
|
|
76
|
-
* #volatile
|
|
77
|
-
* this is the current "task" that is being performed in the UI.
|
|
78
|
-
* this is usually an object of the form
|
|
79
|
-
* `{ taskName: "configure", target: thing_being_configured }`
|
|
80
|
-
*/
|
|
81
|
-
task: undefined,
|
|
82
82
|
}))
|
|
83
83
|
.views(self => ({
|
|
84
84
|
/**
|
|
@@ -22,6 +22,12 @@ export declare function WebSessionConnectionsMixin(pluginManager: PluginManager)
|
|
|
22
22
|
};
|
|
23
23
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
|
|
24
24
|
}, {
|
|
25
|
+
connect(_arg: {
|
|
26
|
+
[x: string]: any;
|
|
27
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
28
|
+
setSubschema(slotName: string, data: unknown): any;
|
|
29
|
+
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
|
|
30
|
+
} & {
|
|
25
31
|
afterAttach(): void;
|
|
26
32
|
addTrackConf(trackConf: {
|
|
27
33
|
[x: string]: any;
|
|
@@ -87,6 +93,12 @@ export declare function WebSessionConnectionsMixin(pluginManager: PluginManager)
|
|
|
87
93
|
};
|
|
88
94
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>;
|
|
89
95
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
96
|
+
connect(_arg: {
|
|
97
|
+
[x: string]: any;
|
|
98
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
99
|
+
setSubschema(slotName: string, data: unknown): any;
|
|
100
|
+
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
|
|
101
|
+
} & {
|
|
90
102
|
afterAttach(): void;
|
|
91
103
|
addTrackConf(trackConf: {
|
|
92
104
|
[x: string]: any;
|
|
@@ -120,6 +132,12 @@ export declare function WebSessionConnectionsMixin(pluginManager: PluginManager)
|
|
|
120
132
|
};
|
|
121
133
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
|
|
122
134
|
}, {
|
|
135
|
+
connect(_arg: {
|
|
136
|
+
[x: string]: any;
|
|
137
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
138
|
+
setSubschema(slotName: string, data: unknown): any;
|
|
139
|
+
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
|
|
140
|
+
} & {
|
|
123
141
|
afterAttach(): void;
|
|
124
142
|
addTrackConf(trackConf: {
|
|
125
143
|
[x: string]: any;
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/web-core",
|
|
3
|
-
"version": "2.7.
|
|
3
|
+
"version": "2.7.2",
|
|
4
4
|
"description": "JBrowse 2 code shared between web-app type products",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"jbrowse",
|
|
@@ -42,8 +42,8 @@
|
|
|
42
42
|
},
|
|
43
43
|
"dependencies": {
|
|
44
44
|
"@babel/runtime": "^7.16.3",
|
|
45
|
-
"@jbrowse/app-core": "^2.7.
|
|
46
|
-
"@jbrowse/product-core": "^2.7.
|
|
45
|
+
"@jbrowse/app-core": "^2.7.2",
|
|
46
|
+
"@jbrowse/product-core": "^2.7.2",
|
|
47
47
|
"@mui/icons-material": "^5.0.0",
|
|
48
48
|
"@mui/material": "^5.10.17",
|
|
49
49
|
"clone": "^2.0.0",
|
|
@@ -62,5 +62,5 @@
|
|
|
62
62
|
"publishConfig": {
|
|
63
63
|
"access": "public"
|
|
64
64
|
},
|
|
65
|
-
"gitHead": "
|
|
65
|
+
"gitHead": "9052b295f2d322e729254457ed9fe2231fb22cce"
|
|
66
66
|
}
|