@jbrowse/web-core 2.6.3 → 2.7.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (7) hide show
  1. package/dist/BaseWebSession/index.d.ts +831 -794
  2. package/dist/BaseWebSession/index.js +1 -1
  3. package/dist/SessionConnections.d.ts +1 -12
  4. package/esm/BaseWebSession/index.d.ts +831 -794
  5. package/esm/BaseWebSession/index.js +2 -2
  6. package/esm/SessionConnections.d.ts +1 -12
  7. package/package.json +8 -9
package/dist/BaseWebSession/index.d.ts CHANGED
@@ -87,6 +87,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
87
87
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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  } & {
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  sessionConnections: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
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+ } & {
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+ focusedViewId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  } & {
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  margin: import("mobx-state-tree").IType<number | undefined, number, number>;
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  sessionPlugins: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<any, any, any>>;
@@ -179,12 +181,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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  addWidget(typeName: string, id: string, initialState?: {}, conf?: unknown): any;
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  showWidget(widget: any): void;
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  hasWidget(widget: any): boolean;
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- hideWidget(widget: any): void; /**
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- * #volatile
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- * this is the current "task" that is being performed in the UI.
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- * this is usually an object of the form
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- * `{ taskName: "configure", target: thing_being_configured }`
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- */
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+ hideWidget(widget: any): void;
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  minimizeWidgetDrawer(): void;
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  showWidgetDrawer(): void;
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  hideAllWidgets(): void;
@@ -206,7 +203,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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  sessionThemeName: string;
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  } & {
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  allThemes(): {
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- [key: string]: import("@mui/material").ThemeOptions;
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+ [x: string]: import("@mui/material").ThemeOptions;
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  };
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  readonly themeName: string;
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  readonly theme: import("@mui/material").Theme;
@@ -235,6 +232,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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  [x: string]: string | undefined;
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  } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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+ } & {
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+ getConf(arg: string): any;
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  } & {
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  readonly initialized: boolean;
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  readonly name: string;
@@ -271,7 +270,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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  getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string | undefined;
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- }>;
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+ }>; /**
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+ * #getter
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+ */
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  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string | undefined;
277
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  }>;
@@ -289,6 +290,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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  [x: string]: string | undefined;
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  } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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+ } & {
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+ getConf(arg: string): any;
292
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  } & {
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  readonly initialized: boolean;
294
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  readonly name: string;
@@ -325,135 +328,15 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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  getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string | undefined;
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- }>;
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+ }>; /**
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+ * #getter
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+ */
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  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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  [x: string]: string | undefined;
331
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  }>;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
333
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- readonly assemblyNameMap: {
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- [key: string]: ({
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- configuration: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- error: unknown;
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- loaded: boolean;
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- loadingP: Promise<void> | undefined;
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- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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- refNameAliases: {
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- [x: string]: string | undefined;
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- } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string | undefined;
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- } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
350
- readonly initialized: boolean;
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- readonly name: string;
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- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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- readonly aliases: string[];
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- readonly displayName: string | undefined;
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- hasName(name: string): boolean;
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- readonly allAliases: string[];
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- readonly allRefNames: string[] | undefined;
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- readonly lowerCaseRefNames: string[] | undefined;
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- readonly allRefNamesWithLowerCase: string[] | undefined; /**
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- * #getter
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- */
362
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
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- readonly refNameColors: string[];
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- } & {
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- readonly refNames: string[] | undefined;
366
- } & {
367
- getCanonicalRefName(refName: string): string | undefined;
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- getRefNameColor(refName: string): string | undefined;
369
- isValidRefName(refName: string): boolean; /**
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- * #getter
371
- */
372
- } & {
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- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
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- setError(e: unknown): void;
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- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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- setRefNameAliases(aliases: {
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- [x: string]: string | undefined;
378
- }, lcAliases: {
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- [x: string]: string | undefined;
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- }): void;
381
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
382
- setLoadingP(p?: Promise<void> | undefined): void; /**
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- * #getter
384
- */
385
- load(): Promise<void>;
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- loadPre(): Promise<void>;
387
- } & {
388
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
389
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
390
- [x: string]: string | undefined;
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- }>;
392
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
393
- [x: string]: string | undefined;
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- }>;
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- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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- }, {
398
- error: unknown;
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- loaded: boolean;
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- loadingP: Promise<void> | undefined;
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- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
402
- refNameAliases: {
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- [x: string]: string | undefined;
404
- } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string | undefined;
407
- } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
409
- } & {
410
- readonly initialized: boolean;
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- readonly name: string;
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- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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- readonly aliases: string[];
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- readonly displayName: string | undefined;
415
- hasName(name: string): boolean;
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- readonly allAliases: string[];
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- readonly allRefNames: string[] | undefined; /**
418
- * #action
419
- */
420
- readonly lowerCaseRefNames: string[] | undefined;
421
- readonly allRefNamesWithLowerCase: string[] | undefined; /**
422
- * #action
423
- */
424
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
425
- readonly refNameColors: string[];
426
- } & {
427
- readonly refNames: string[] | undefined;
428
- } & {
429
- getCanonicalRefName(refName: string): string | undefined;
430
- getRefNameColor(refName: string): string | undefined;
431
- isValidRefName(refName: string): boolean;
432
- } & {
433
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
434
- setError(e: unknown): void;
435
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
436
- setRefNameAliases(aliases: {
437
- [x: string]: string | undefined;
438
- }, lcAliases: {
439
- [x: string]: string | undefined;
440
- }): void;
441
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
442
- setLoadingP(p?: Promise<void> | undefined): void;
443
- load(): Promise<void>;
444
- loadPre(): Promise<void>;
445
- } & {
446
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
447
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
448
- [x: string]: string | undefined;
449
- }>;
450
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
451
- [x: string]: string | undefined;
452
- }>;
453
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
454
- };
455
- } & {
456
- get(asmName: string): ({
339
+ readonly assemblyNameMap: Record<string, ({
457
340
  configuration: any;
458
341
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
459
342
  error: unknown;
@@ -467,6 +350,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
467
350
  [x: string]: string | undefined;
468
351
  } | undefined;
469
352
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
353
+ } & {
354
+ getConf(arg: string): any;
470
355
  } & {
471
356
  readonly initialized: boolean;
472
357
  readonly name: string;
@@ -495,10 +380,14 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
495
380
  }, lcAliases: {
496
381
  [x: string]: string | undefined;
497
382
  }): void;
498
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
383
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void; /**
384
+ * #getter
385
+ */
499
386
  setLoadingP(p?: Promise<void> | undefined): void;
500
387
  load(): Promise<void>;
501
- loadPre(): Promise<void>;
388
+ loadPre(): Promise<void>; /**
389
+ * #getter
390
+ */
502
391
  } & {
503
392
  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
504
393
  getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
@@ -521,6 +410,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
521
410
  [x: string]: string | undefined;
522
411
  } | undefined;
523
412
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
413
+ } & {
414
+ getConf(arg: string): any;
524
415
  } & {
525
416
  readonly initialized: boolean;
526
417
  readonly name: string;
@@ -551,26 +442,23 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
551
442
  }): void;
552
443
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
553
444
  setLoadingP(p?: Promise<void> | undefined): void;
554
- load(): Promise<void>;
445
+ load(): Promise<void>; /**
446
+ * #action
447
+ */
555
448
  loadPre(): Promise<void>;
556
449
  } & {
557
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
450
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>; /**
451
+ * #action
452
+ */
558
453
  getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
559
454
  [x: string]: string | undefined;
560
455
  }>;
561
456
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
562
457
  [x: string]: string | undefined;
563
458
  }>;
564
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
565
- readonly assemblyNamesList: any[];
566
- readonly assemblyList: ({
567
- [x: string]: any;
568
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
569
- setSubschema(slotName: string, data: unknown): any;
570
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
571
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
459
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
572
460
  } & {
573
- waitForAssembly(assemblyName: string): Promise<({
461
+ get(asmName: string): ({
574
462
  configuration: any;
575
463
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
576
464
  error: unknown;
@@ -584,6 +472,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
584
472
  [x: string]: string | undefined;
585
473
  } | undefined;
586
474
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
475
+ } & {
476
+ getConf(arg: string): any;
587
477
  } & {
588
478
  readonly initialized: boolean;
589
479
  readonly name: string;
@@ -638,6 +528,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
638
528
  [x: string]: string | undefined;
639
529
  } | undefined;
640
530
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
531
+ } & {
532
+ getConf(arg: string): any;
641
533
  } & {
642
534
  readonly initialized: boolean;
643
535
  readonly name: string;
@@ -678,23 +570,16 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
678
570
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
679
571
  [x: string]: string | undefined;
680
572
  }>;
681
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
682
- getRefNameMapForAdapter(adapterConf: unknown, assemblyName: string | undefined, opts: {
683
- signal?: AbortSignal | undefined;
684
- sessionId: string;
685
- }): Promise<{
686
- [x: string]: string | undefined;
687
- } | undefined>;
688
- getReverseRefNameMapForAdapter(adapterConf: unknown, assemblyName: string | undefined, opts: {
689
- signal?: AbortSignal | undefined;
690
- sessionId: string;
691
- }): Promise<{
692
- [x: string]: string | undefined;
693
- } | undefined>;
694
- isValidRefName(refName: string, assemblyName: string): boolean;
573
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
574
+ readonly assemblyNamesList: any[];
575
+ readonly assemblyList: ({
576
+ [x: string]: any;
577
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
578
+ setSubschema(slotName: string, data: unknown): any;
579
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
580
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
695
581
  } & {
696
- afterAttach(): void;
697
- removeAssembly(asm: {
582
+ waitForAssembly(assemblyName: string): Promise<({
698
583
  configuration: any;
699
584
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
700
585
  error: unknown;
@@ -708,6 +593,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
708
593
  [x: string]: string | undefined;
709
594
  } | undefined;
710
595
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
596
+ } & {
597
+ getConf(arg: string): any;
711
598
  } & {
712
599
  readonly initialized: boolean;
713
600
  readonly name: string;
@@ -738,10 +625,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
738
625
  }): void;
739
626
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
740
627
  setLoadingP(p?: Promise<void> | undefined): void;
741
- /**
742
- * #getter
743
- * list of config connections and session connections
744
- */
745
628
  load(): Promise<void>;
746
629
  loadPre(): Promise<void>;
747
630
  } & {
@@ -766,6 +649,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
766
649
  [x: string]: string | undefined;
767
650
  } | undefined;
768
651
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
652
+ } & {
653
+ getConf(arg: string): any;
769
654
  } & {
770
655
  readonly initialized: boolean;
771
656
  readonly name: string;
@@ -796,10 +681,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
796
681
  }): void;
797
682
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
798
683
  setLoadingP(p?: Promise<void> | undefined): void;
799
- /**
800
- * #getter
801
- * list of config connections and session connections
802
- */
803
684
  load(): Promise<void>;
804
685
  loadPre(): Promise<void>;
805
686
  } & {
@@ -810,13 +691,25 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
810
691
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
811
692
  [x: string]: string | undefined;
812
693
  }>;
813
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
814
- addAssembly(configuration: any): void;
815
- replaceAssembly(idx: number, configuration: any): void;
816
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
817
- assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
818
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
819
- }, {
694
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
695
+ getRefNameMapForAdapter(adapterConf: unknown, assemblyName: string | undefined, opts: {
696
+ signal?: AbortSignal | undefined;
697
+ sessionId: string;
698
+ }): Promise<{
699
+ [x: string]: string | undefined;
700
+ } | undefined>;
701
+ getReverseRefNameMapForAdapter(adapterConf: unknown, assemblyName: string | undefined, opts: {
702
+ signal?: AbortSignal | undefined;
703
+ sessionId: string;
704
+ }): Promise<{
705
+ [x: string]: string | undefined;
706
+ } | undefined>;
707
+ isValidRefName(refName: string, assemblyName: string): boolean;
708
+ } & {
709
+ afterAttach(): void;
710
+ removeAssembly(asm: {
711
+ configuration: any;
712
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
820
713
  error: unknown;
821
714
  loaded: boolean;
822
715
  loadingP: Promise<void> | undefined;
@@ -828,6 +721,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
828
721
  [x: string]: string | undefined;
829
722
  } | undefined;
830
723
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
724
+ } & {
725
+ getConf(arg: string): any;
831
726
  } & {
832
727
  readonly initialized: boolean;
833
728
  readonly name: string;
@@ -868,133 +763,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
868
763
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
869
764
  [x: string]: string | undefined;
870
765
  }>;
871
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
872
- }, {
873
- readonly assemblyNameMap: {
874
- [key: string]: ({
875
- configuration: any;
876
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
877
- error: unknown;
878
- loaded: boolean;
879
- loadingP: Promise<void> | undefined;
880
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
881
- refNameAliases: {
882
- [x: string]: string | undefined;
883
- } | undefined;
884
- lowerCaseRefNameAliases: {
885
- [x: string]: string | undefined;
886
- } | undefined;
887
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
888
- } & {
889
- readonly initialized: boolean;
890
- readonly name: string;
891
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
892
- readonly aliases: string[];
893
- readonly displayName: string | undefined;
894
- hasName(name: string): boolean;
895
- readonly allAliases: string[];
896
- readonly allRefNames: string[] | undefined;
897
- readonly lowerCaseRefNames: string[] | undefined;
898
- readonly allRefNamesWithLowerCase: string[] | undefined; /**
899
- * #getter
900
- */
901
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
902
- readonly refNameColors: string[];
903
- } & {
904
- readonly refNames: string[] | undefined;
905
- } & {
906
- getCanonicalRefName(refName: string): string | undefined;
907
- getRefNameColor(refName: string): string | undefined;
908
- isValidRefName(refName: string): boolean; /**
909
- * #getter
910
- */
911
- } & {
912
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
913
- setError(e: unknown): void;
914
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
915
- setRefNameAliases(aliases: {
916
- [x: string]: string | undefined;
917
- }, lcAliases: {
918
- [x: string]: string | undefined;
919
- }): void;
920
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
921
- setLoadingP(p?: Promise<void> | undefined): void; /**
922
- * #getter
923
- */
924
- load(): Promise<void>;
925
- loadPre(): Promise<void>;
926
- } & {
927
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
928
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
929
- [x: string]: string | undefined;
930
- }>;
931
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
932
- [x: string]: string | undefined;
933
- }>;
934
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
935
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
936
- }, {
937
- error: unknown;
938
- loaded: boolean;
939
- loadingP: Promise<void> | undefined;
940
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
941
- refNameAliases: {
942
- [x: string]: string | undefined;
943
- } | undefined;
944
- lowerCaseRefNameAliases: {
945
- [x: string]: string | undefined;
946
- } | undefined;
947
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
948
- } & {
949
- readonly initialized: boolean;
950
- readonly name: string;
951
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
952
- readonly aliases: string[];
953
- readonly displayName: string | undefined;
954
- hasName(name: string): boolean;
955
- readonly allAliases: string[];
956
- readonly allRefNames: string[] | undefined; /**
957
- * #action
958
- */
959
- readonly lowerCaseRefNames: string[] | undefined;
960
- readonly allRefNamesWithLowerCase: string[] | undefined; /**
961
- * #action
962
- */
963
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
964
- readonly refNameColors: string[];
965
- } & {
966
- readonly refNames: string[] | undefined;
967
- } & {
968
- getCanonicalRefName(refName: string): string | undefined;
969
- getRefNameColor(refName: string): string | undefined;
970
- isValidRefName(refName: string): boolean;
971
- } & {
972
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
973
- setError(e: unknown): void;
974
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
975
- setRefNameAliases(aliases: {
976
- [x: string]: string | undefined;
977
- }, lcAliases: {
978
- [x: string]: string | undefined;
979
- }): void;
980
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
981
- setLoadingP(p?: Promise<void> | undefined): void;
982
- load(): Promise<void>;
983
- loadPre(): Promise<void>;
984
- } & {
985
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
986
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
987
- [x: string]: string | undefined;
988
- }>;
989
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
990
- [x: string]: string | undefined;
991
- }>;
992
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
993
- };
994
- } & {
995
- get(asmName: string): ({
996
- configuration: any;
997
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
766
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
767
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
768
+ }, {
998
769
  error: unknown;
999
770
  loaded: boolean;
1000
771
  loadingP: Promise<void> | undefined;
@@ -1006,6 +777,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1006
777
  [x: string]: string | undefined;
1007
778
  } | undefined;
1008
779
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
780
+ } & {
781
+ getConf(arg: string): any;
1009
782
  } & {
1010
783
  readonly initialized: boolean;
1011
784
  readonly name: string;
@@ -1046,7 +819,11 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1046
819
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1047
820
  [x: string]: string | undefined;
1048
821
  }>;
1049
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
822
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
823
+ addAssembly(configuration: any): void;
824
+ replaceAssembly(idx: number, configuration: any): void;
825
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
826
+ assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
1050
827
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1051
828
  }, {
1052
829
  error: unknown;
@@ -1060,6 +837,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1060
837
  [x: string]: string | undefined;
1061
838
  } | undefined;
1062
839
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
840
+ } & {
841
+ getConf(arg: string): any;
1063
842
  } & {
1064
843
  readonly initialized: boolean;
1065
844
  readonly name: string;
@@ -1096,20 +875,15 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1096
875
  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1097
876
  getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1098
877
  [x: string]: string | undefined;
1099
- }>;
878
+ }>; /**
879
+ * #getter
880
+ */
1100
881
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1101
882
  [x: string]: string | undefined;
1102
883
  }>;
1103
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1104
- readonly assemblyNamesList: any[];
1105
- readonly assemblyList: ({
1106
- [x: string]: any;
1107
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1108
- setSubschema(slotName: string, data: unknown): any;
1109
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
1110
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1111
- } & {
1112
- waitForAssembly(assemblyName: string): Promise<({
884
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
885
+ }, {
886
+ readonly assemblyNameMap: Record<string, ({
1113
887
  configuration: any;
1114
888
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1115
889
  error: unknown;
@@ -1123,6 +897,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1123
897
  [x: string]: string | undefined;
1124
898
  } | undefined;
1125
899
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
900
+ } & {
901
+ getConf(arg: string): any;
1126
902
  } & {
1127
903
  readonly initialized: boolean;
1128
904
  readonly name: string;
@@ -1151,10 +927,14 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1151
927
  }, lcAliases: {
1152
928
  [x: string]: string | undefined;
1153
929
  }): void;
1154
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
930
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void; /**
931
+ * #getter
932
+ */
1155
933
  setLoadingP(p?: Promise<void> | undefined): void;
1156
934
  load(): Promise<void>;
1157
- loadPre(): Promise<void>;
935
+ loadPre(): Promise<void>; /**
936
+ * #getter
937
+ */
1158
938
  } & {
1159
939
  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1160
940
  getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
@@ -1177,6 +957,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1177
957
  [x: string]: string | undefined;
1178
958
  } | undefined;
1179
959
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
960
+ } & {
961
+ getConf(arg: string): any;
1180
962
  } & {
1181
963
  readonly initialized: boolean;
1182
964
  readonly name: string;
@@ -1207,10 +989,14 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1207
989
  }): void;
1208
990
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1209
991
  setLoadingP(p?: Promise<void> | undefined): void;
1210
- load(): Promise<void>;
992
+ load(): Promise<void>; /**
993
+ * #action
994
+ */
1211
995
  loadPre(): Promise<void>;
1212
996
  } & {
1213
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
997
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>; /**
998
+ * #action
999
+ */
1214
1000
  getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1215
1001
  [x: string]: string | undefined;
1216
1002
  }>;
@@ -1218,22 +1004,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1218
1004
  [x: string]: string | undefined;
1219
1005
  }>;
1220
1006
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1221
- getRefNameMapForAdapter(adapterConf: unknown, assemblyName: string | undefined, opts: {
1222
- signal?: AbortSignal | undefined;
1223
- sessionId: string;
1224
- }): Promise<{
1225
- [x: string]: string | undefined;
1226
- } | undefined>;
1227
- getReverseRefNameMapForAdapter(adapterConf: unknown, assemblyName: string | undefined, opts: {
1228
- signal?: AbortSignal | undefined;
1229
- sessionId: string;
1230
- }): Promise<{
1231
- [x: string]: string | undefined;
1232
- } | undefined>;
1233
- isValidRefName(refName: string, assemblyName: string): boolean;
1234
1007
  } & {
1235
- afterAttach(): void;
1236
- removeAssembly(asm: {
1008
+ get(asmName: string): ({
1237
1009
  configuration: any;
1238
1010
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1239
1011
  error: unknown;
@@ -1247,6 +1019,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1247
1019
  [x: string]: string | undefined;
1248
1020
  } | undefined;
1249
1021
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1022
+ } & {
1023
+ getConf(arg: string): any;
1250
1024
  } & {
1251
1025
  readonly initialized: boolean;
1252
1026
  readonly name: string;
@@ -1277,10 +1051,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1277
1051
  }): void;
1278
1052
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1279
1053
  setLoadingP(p?: Promise<void> | undefined): void;
1280
- /**
1281
- * #getter
1282
- * list of config connections and session connections
1283
- */
1284
1054
  load(): Promise<void>;
1285
1055
  loadPre(): Promise<void>;
1286
1056
  } & {
@@ -1305,6 +1075,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1305
1075
  [x: string]: string | undefined;
1306
1076
  } | undefined;
1307
1077
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1078
+ } & {
1079
+ getConf(arg: string): any;
1308
1080
  } & {
1309
1081
  readonly initialized: boolean;
1310
1082
  readonly name: string;
@@ -1335,10 +1107,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1335
1107
  }): void;
1336
1108
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1337
1109
  setLoadingP(p?: Promise<void> | undefined): void;
1338
- /**
1339
- * #getter
1340
- * list of config connections and session connections
1341
- */
1342
1110
  load(): Promise<void>;
1343
1111
  loadPre(): Promise<void>;
1344
1112
  } & {
@@ -1349,32 +1117,18 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1349
1117
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1350
1118
  [x: string]: string | undefined;
1351
1119
  }>;
1352
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
1353
- addAssembly(configuration: any): void;
1354
- replaceAssembly(idx: number, configuration: any): void;
1355
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>;
1356
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1357
- rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1358
- adminMode: boolean;
1359
- isAssemblyEditing: boolean;
1360
- error: unknown;
1361
- textSearchManager: TextSearchManager;
1362
- pluginManager: PluginManager;
1363
- } & {
1364
- setError(error: unknown): void;
1365
- setSession(sessionSnapshot?: any): void;
1366
- setDefaultSession(): void;
1367
- setSessionPath(path: string): void;
1368
- renameCurrentSession(newName: string): void;
1369
- setAssemblyEditing(flag: boolean): void;
1370
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1371
- jbrowse: import("mobx-state-tree").IAnyType;
1372
- session: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
1373
- sessionPath: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
1374
- assemblyManager: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
1375
- assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
1376
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1377
- }, {
1120
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1121
+ readonly assemblyNamesList: any[];
1122
+ readonly assemblyList: ({
1123
+ [x: string]: any;
1124
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1125
+ setSubschema(slotName: string, data: unknown): any;
1126
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
1127
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1128
+ } & {
1129
+ waitForAssembly(assemblyName: string): Promise<({
1130
+ configuration: any;
1131
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1378
1132
  error: unknown;
1379
1133
  loaded: boolean;
1380
1134
  loadingP: Promise<void> | undefined;
@@ -1386,6 +1140,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1386
1140
  [x: string]: string | undefined;
1387
1141
  } | undefined;
1388
1142
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1143
+ } & {
1144
+ getConf(arg: string): any;
1389
1145
  } & {
1390
1146
  readonly initialized: boolean;
1391
1147
  readonly name: string;
@@ -1426,133 +1182,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1426
1182
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1427
1183
  [x: string]: string | undefined;
1428
1184
  }>;
1429
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1430
- }, {
1431
- readonly assemblyNameMap: {
1432
- [key: string]: ({
1433
- configuration: any;
1434
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1435
- error: unknown;
1436
- loaded: boolean;
1437
- loadingP: Promise<void> | undefined;
1438
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1439
- refNameAliases: {
1440
- [x: string]: string | undefined;
1441
- } | undefined;
1442
- lowerCaseRefNameAliases: {
1443
- [x: string]: string | undefined;
1444
- } | undefined;
1445
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1446
- } & {
1447
- readonly initialized: boolean;
1448
- readonly name: string;
1449
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1450
- readonly aliases: string[];
1451
- readonly displayName: string | undefined;
1452
- hasName(name: string): boolean;
1453
- readonly allAliases: string[];
1454
- readonly allRefNames: string[] | undefined;
1455
- readonly lowerCaseRefNames: string[] | undefined;
1456
- readonly allRefNamesWithLowerCase: string[] | undefined; /**
1457
- * #getter
1458
- */
1459
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1460
- readonly refNameColors: string[];
1461
- } & {
1462
- readonly refNames: string[] | undefined;
1463
- } & {
1464
- getCanonicalRefName(refName: string): string | undefined;
1465
- getRefNameColor(refName: string): string | undefined;
1466
- isValidRefName(refName: string): boolean; /**
1467
- * #getter
1468
- */
1469
- } & {
1470
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1471
- setError(e: unknown): void;
1472
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1473
- setRefNameAliases(aliases: {
1474
- [x: string]: string | undefined;
1475
- }, lcAliases: {
1476
- [x: string]: string | undefined;
1477
- }): void;
1478
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1479
- setLoadingP(p?: Promise<void> | undefined): void; /**
1480
- * #getter
1481
- */
1482
- load(): Promise<void>;
1483
- loadPre(): Promise<void>;
1484
- } & {
1485
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1486
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1487
- [x: string]: string | undefined;
1488
- }>;
1489
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1490
- [x: string]: string | undefined;
1491
- }>;
1492
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1493
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1494
- }, {
1495
- error: unknown;
1496
- loaded: boolean;
1497
- loadingP: Promise<void> | undefined;
1498
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1499
- refNameAliases: {
1500
- [x: string]: string | undefined;
1501
- } | undefined;
1502
- lowerCaseRefNameAliases: {
1503
- [x: string]: string | undefined;
1504
- } | undefined;
1505
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1506
- } & {
1507
- readonly initialized: boolean;
1508
- readonly name: string;
1509
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1510
- readonly aliases: string[];
1511
- readonly displayName: string | undefined;
1512
- hasName(name: string): boolean;
1513
- readonly allAliases: string[];
1514
- readonly allRefNames: string[] | undefined; /**
1515
- * #action
1516
- */
1517
- readonly lowerCaseRefNames: string[] | undefined;
1518
- readonly allRefNamesWithLowerCase: string[] | undefined; /**
1519
- * #action
1520
- */
1521
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1522
- readonly refNameColors: string[];
1523
- } & {
1524
- readonly refNames: string[] | undefined;
1525
- } & {
1526
- getCanonicalRefName(refName: string): string | undefined;
1527
- getRefNameColor(refName: string): string | undefined;
1528
- isValidRefName(refName: string): boolean;
1529
- } & {
1530
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1531
- setError(e: unknown): void;
1532
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1533
- setRefNameAliases(aliases: {
1534
- [x: string]: string | undefined;
1535
- }, lcAliases: {
1536
- [x: string]: string | undefined;
1537
- }): void;
1538
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1539
- setLoadingP(p?: Promise<void> | undefined): void;
1540
- load(): Promise<void>;
1541
- loadPre(): Promise<void>;
1542
- } & {
1543
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1544
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1545
- [x: string]: string | undefined;
1546
- }>;
1547
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1548
- [x: string]: string | undefined;
1549
- }>;
1550
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1551
- };
1552
- } & {
1553
- get(asmName: string): ({
1554
- configuration: any;
1555
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1185
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1186
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1187
+ }, {
1556
1188
  error: unknown;
1557
1189
  loaded: boolean;
1558
1190
  loadingP: Promise<void> | undefined;
@@ -1564,6 +1196,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1564
1196
  [x: string]: string | undefined;
1565
1197
  } | undefined;
1566
1198
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1199
+ } & {
1200
+ getConf(arg: string): any;
1567
1201
  } & {
1568
1202
  readonly initialized: boolean;
1569
1203
  readonly name: string;
@@ -1604,9 +1238,25 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1604
1238
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1605
1239
  [x: string]: string | undefined;
1606
1240
  }>;
1607
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1608
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1609
- }, {
1241
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1242
+ getRefNameMapForAdapter(adapterConf: unknown, assemblyName: string | undefined, opts: {
1243
+ signal?: AbortSignal | undefined;
1244
+ sessionId: string;
1245
+ }): Promise<{
1246
+ [x: string]: string | undefined;
1247
+ } | undefined>;
1248
+ getReverseRefNameMapForAdapter(adapterConf: unknown, assemblyName: string | undefined, opts: {
1249
+ signal?: AbortSignal | undefined;
1250
+ sessionId: string;
1251
+ }): Promise<{
1252
+ [x: string]: string | undefined;
1253
+ } | undefined>;
1254
+ isValidRefName(refName: string, assemblyName: string): boolean;
1255
+ } & {
1256
+ afterAttach(): void;
1257
+ removeAssembly(asm: {
1258
+ configuration: any;
1259
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1610
1260
  error: unknown;
1611
1261
  loaded: boolean;
1612
1262
  loadingP: Promise<void> | undefined;
@@ -1618,6 +1268,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1618
1268
  [x: string]: string | undefined;
1619
1269
  } | undefined;
1620
1270
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1271
+ } & {
1272
+ getConf(arg: string): any;
1621
1273
  } & {
1622
1274
  readonly initialized: boolean;
1623
1275
  readonly name: string;
@@ -1658,18 +1310,391 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1658
1310
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1659
1311
  [x: string]: string | undefined;
1660
1312
  }>;
1661
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1662
- readonly assemblyNamesList: any[];
1663
- readonly assemblyList: ({
1664
- [x: string]: any;
1665
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1666
- setSubschema(slotName: string, data: unknown): any;
1667
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
1668
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1669
- } & {
1670
- waitForAssembly(assemblyName: string): Promise<({
1671
- configuration: any;
1672
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1313
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1314
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1315
+ }, {
1316
+ error: unknown;
1317
+ loaded: boolean;
1318
+ loadingP: Promise<void> | undefined;
1319
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1320
+ refNameAliases: {
1321
+ [x: string]: string | undefined;
1322
+ } | undefined;
1323
+ lowerCaseRefNameAliases: {
1324
+ [x: string]: string | undefined;
1325
+ } | undefined;
1326
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1327
+ } & {
1328
+ getConf(arg: string): any;
1329
+ } & {
1330
+ readonly initialized: boolean;
1331
+ readonly name: string;
1332
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1333
+ readonly aliases: string[];
1334
+ readonly displayName: string | undefined;
1335
+ hasName(name: string): boolean;
1336
+ readonly allAliases: string[];
1337
+ readonly allRefNames: string[] | undefined;
1338
+ readonly lowerCaseRefNames: string[] | undefined;
1339
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1340
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1341
+ readonly refNameColors: string[];
1342
+ } & {
1343
+ readonly refNames: string[] | undefined;
1344
+ } & {
1345
+ getCanonicalRefName(refName: string): string | undefined;
1346
+ getRefNameColor(refName: string): string | undefined;
1347
+ isValidRefName(refName: string): boolean;
1348
+ } & {
1349
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1350
+ setError(e: unknown): void;
1351
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1352
+ setRefNameAliases(aliases: {
1353
+ [x: string]: string | undefined;
1354
+ }, lcAliases: {
1355
+ [x: string]: string | undefined;
1356
+ }): void;
1357
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1358
+ setLoadingP(p?: Promise<void> | undefined): void;
1359
+ load(): Promise<void>;
1360
+ loadPre(): Promise<void>;
1361
+ } & {
1362
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1363
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1364
+ [x: string]: string | undefined;
1365
+ }>;
1366
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1367
+ [x: string]: string | undefined;
1368
+ }>;
1369
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
1370
+ addAssembly(configuration: any): void;
1371
+ replaceAssembly(idx: number, configuration: any): void;
1372
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>;
1373
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1374
+ rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1375
+ adminMode: boolean;
1376
+ isAssemblyEditing: boolean;
1377
+ error: unknown;
1378
+ textSearchManager: TextSearchManager;
1379
+ pluginManager: PluginManager;
1380
+ } & {
1381
+ setError(error: unknown): void;
1382
+ setSession(sessionSnapshot?: any): void;
1383
+ setDefaultSession(): void;
1384
+ setSessionPath(path: string): void;
1385
+ renameCurrentSession(newName: string): void;
1386
+ setAssemblyEditing(flag: boolean): void;
1387
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1388
+ jbrowse: import("mobx-state-tree").IAnyType;
1389
+ session: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
1390
+ sessionPath: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
1391
+ assemblyManager: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
1392
+ assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
1393
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1394
+ }, {
1395
+ error: unknown;
1396
+ loaded: boolean;
1397
+ loadingP: Promise<void> | undefined;
1398
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1399
+ refNameAliases: {
1400
+ [x: string]: string | undefined;
1401
+ } | undefined;
1402
+ lowerCaseRefNameAliases: {
1403
+ [x: string]: string | undefined;
1404
+ } | undefined;
1405
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1406
+ } & {
1407
+ getConf(arg: string): any;
1408
+ } & {
1409
+ readonly initialized: boolean;
1410
+ readonly name: string;
1411
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1412
+ readonly aliases: string[];
1413
+ readonly displayName: string | undefined;
1414
+ hasName(name: string): boolean;
1415
+ readonly allAliases: string[];
1416
+ readonly allRefNames: string[] | undefined;
1417
+ readonly lowerCaseRefNames: string[] | undefined;
1418
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1419
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1420
+ readonly refNameColors: string[];
1421
+ } & {
1422
+ readonly refNames: string[] | undefined;
1423
+ } & {
1424
+ getCanonicalRefName(refName: string): string | undefined;
1425
+ getRefNameColor(refName: string): string | undefined;
1426
+ isValidRefName(refName: string): boolean;
1427
+ } & {
1428
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1429
+ setError(e: unknown): void;
1430
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1431
+ setRefNameAliases(aliases: {
1432
+ [x: string]: string | undefined;
1433
+ }, lcAliases: {
1434
+ [x: string]: string | undefined;
1435
+ }): void;
1436
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1437
+ setLoadingP(p?: Promise<void> | undefined): void;
1438
+ load(): Promise<void>;
1439
+ loadPre(): Promise<void>;
1440
+ } & {
1441
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1442
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1443
+ [x: string]: string | undefined;
1444
+ }>; /**
1445
+ * #getter
1446
+ */
1447
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1448
+ [x: string]: string | undefined;
1449
+ }>;
1450
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1451
+ }, {
1452
+ readonly assemblyNameMap: Record<string, ({
1453
+ configuration: any;
1454
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1455
+ error: unknown;
1456
+ loaded: boolean;
1457
+ loadingP: Promise<void> | undefined;
1458
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1459
+ refNameAliases: {
1460
+ [x: string]: string | undefined;
1461
+ } | undefined;
1462
+ lowerCaseRefNameAliases: {
1463
+ [x: string]: string | undefined;
1464
+ } | undefined;
1465
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1466
+ } & {
1467
+ getConf(arg: string): any;
1468
+ } & {
1469
+ readonly initialized: boolean;
1470
+ readonly name: string;
1471
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1472
+ readonly aliases: string[];
1473
+ readonly displayName: string | undefined;
1474
+ hasName(name: string): boolean;
1475
+ readonly allAliases: string[];
1476
+ readonly allRefNames: string[] | undefined;
1477
+ readonly lowerCaseRefNames: string[] | undefined;
1478
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1479
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1480
+ readonly refNameColors: string[];
1481
+ } & {
1482
+ readonly refNames: string[] | undefined;
1483
+ } & {
1484
+ getCanonicalRefName(refName: string): string | undefined;
1485
+ getRefNameColor(refName: string): string | undefined;
1486
+ isValidRefName(refName: string): boolean;
1487
+ } & {
1488
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1489
+ setError(e: unknown): void;
1490
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1491
+ setRefNameAliases(aliases: {
1492
+ [x: string]: string | undefined;
1493
+ }, lcAliases: {
1494
+ [x: string]: string | undefined;
1495
+ }): void;
1496
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void; /**
1497
+ * #getter
1498
+ */
1499
+ setLoadingP(p?: Promise<void> | undefined): void;
1500
+ load(): Promise<void>;
1501
+ loadPre(): Promise<void>; /**
1502
+ * #getter
1503
+ */
1504
+ } & {
1505
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1506
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1507
+ [x: string]: string | undefined;
1508
+ }>;
1509
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1510
+ [x: string]: string | undefined;
1511
+ }>;
1512
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1513
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1514
+ }, {
1515
+ error: unknown;
1516
+ loaded: boolean;
1517
+ loadingP: Promise<void> | undefined;
1518
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1519
+ refNameAliases: {
1520
+ [x: string]: string | undefined;
1521
+ } | undefined;
1522
+ lowerCaseRefNameAliases: {
1523
+ [x: string]: string | undefined;
1524
+ } | undefined;
1525
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1526
+ } & {
1527
+ getConf(arg: string): any;
1528
+ } & {
1529
+ readonly initialized: boolean;
1530
+ readonly name: string;
1531
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1532
+ readonly aliases: string[];
1533
+ readonly displayName: string | undefined;
1534
+ hasName(name: string): boolean;
1535
+ readonly allAliases: string[];
1536
+ readonly allRefNames: string[] | undefined;
1537
+ readonly lowerCaseRefNames: string[] | undefined;
1538
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1539
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1540
+ readonly refNameColors: string[];
1541
+ } & {
1542
+ readonly refNames: string[] | undefined;
1543
+ } & {
1544
+ getCanonicalRefName(refName: string): string | undefined;
1545
+ getRefNameColor(refName: string): string | undefined;
1546
+ isValidRefName(refName: string): boolean;
1547
+ } & {
1548
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1549
+ setError(e: unknown): void;
1550
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1551
+ setRefNameAliases(aliases: {
1552
+ [x: string]: string | undefined;
1553
+ }, lcAliases: {
1554
+ [x: string]: string | undefined;
1555
+ }): void;
1556
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1557
+ setLoadingP(p?: Promise<void> | undefined): void;
1558
+ load(): Promise<void>; /**
1559
+ * #action
1560
+ */
1561
+ loadPre(): Promise<void>;
1562
+ } & {
1563
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>; /**
1564
+ * #action
1565
+ */
1566
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1567
+ [x: string]: string | undefined;
1568
+ }>;
1569
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1570
+ [x: string]: string | undefined;
1571
+ }>;
1572
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1573
+ } & {
1574
+ get(asmName: string): ({
1575
+ configuration: any;
1576
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1577
+ error: unknown;
1578
+ loaded: boolean;
1579
+ loadingP: Promise<void> | undefined;
1580
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1581
+ refNameAliases: {
1582
+ [x: string]: string | undefined;
1583
+ } | undefined;
1584
+ lowerCaseRefNameAliases: {
1585
+ [x: string]: string | undefined;
1586
+ } | undefined;
1587
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1588
+ } & {
1589
+ getConf(arg: string): any;
1590
+ } & {
1591
+ readonly initialized: boolean;
1592
+ readonly name: string;
1593
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1594
+ readonly aliases: string[];
1595
+ readonly displayName: string | undefined;
1596
+ hasName(name: string): boolean;
1597
+ readonly allAliases: string[];
1598
+ readonly allRefNames: string[] | undefined;
1599
+ readonly lowerCaseRefNames: string[] | undefined;
1600
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1601
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1602
+ readonly refNameColors: string[];
1603
+ } & {
1604
+ readonly refNames: string[] | undefined;
1605
+ } & {
1606
+ getCanonicalRefName(refName: string): string | undefined;
1607
+ getRefNameColor(refName: string): string | undefined;
1608
+ isValidRefName(refName: string): boolean;
1609
+ } & {
1610
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1611
+ setError(e: unknown): void;
1612
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1613
+ setRefNameAliases(aliases: {
1614
+ [x: string]: string | undefined;
1615
+ }, lcAliases: {
1616
+ [x: string]: string | undefined;
1617
+ }): void;
1618
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1619
+ setLoadingP(p?: Promise<void> | undefined): void;
1620
+ load(): Promise<void>;
1621
+ loadPre(): Promise<void>;
1622
+ } & {
1623
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1624
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1625
+ [x: string]: string | undefined;
1626
+ }>;
1627
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1628
+ [x: string]: string | undefined;
1629
+ }>;
1630
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1631
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1632
+ }, {
1633
+ error: unknown;
1634
+ loaded: boolean;
1635
+ loadingP: Promise<void> | undefined;
1636
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1637
+ refNameAliases: {
1638
+ [x: string]: string | undefined;
1639
+ } | undefined;
1640
+ lowerCaseRefNameAliases: {
1641
+ [x: string]: string | undefined;
1642
+ } | undefined;
1643
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1644
+ } & {
1645
+ getConf(arg: string): any;
1646
+ } & {
1647
+ readonly initialized: boolean;
1648
+ readonly name: string;
1649
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1650
+ readonly aliases: string[];
1651
+ readonly displayName: string | undefined;
1652
+ hasName(name: string): boolean;
1653
+ readonly allAliases: string[];
1654
+ readonly allRefNames: string[] | undefined;
1655
+ readonly lowerCaseRefNames: string[] | undefined;
1656
+ readonly allRefNamesWithLowerCase: string[] | undefined;
1657
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1658
+ readonly refNameColors: string[];
1659
+ } & {
1660
+ readonly refNames: string[] | undefined;
1661
+ } & {
1662
+ getCanonicalRefName(refName: string): string | undefined;
1663
+ getRefNameColor(refName: string): string | undefined;
1664
+ isValidRefName(refName: string): boolean;
1665
+ } & {
1666
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1667
+ setError(e: unknown): void;
1668
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1669
+ setRefNameAliases(aliases: {
1670
+ [x: string]: string | undefined;
1671
+ }, lcAliases: {
1672
+ [x: string]: string | undefined;
1673
+ }): void;
1674
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1675
+ setLoadingP(p?: Promise<void> | undefined): void;
1676
+ load(): Promise<void>;
1677
+ loadPre(): Promise<void>;
1678
+ } & {
1679
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
1680
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1681
+ [x: string]: string | undefined;
1682
+ }>;
1683
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1684
+ [x: string]: string | undefined;
1685
+ }>;
1686
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1687
+ readonly assemblyNamesList: any[];
1688
+ readonly assemblyList: ({
1689
+ [x: string]: any;
1690
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1691
+ setSubschema(slotName: string, data: unknown): any;
1692
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
1693
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
1694
+ } & {
1695
+ waitForAssembly(assemblyName: string): Promise<({
1696
+ configuration: any;
1697
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1673
1698
  error: unknown;
1674
1699
  loaded: boolean;
1675
1700
  loadingP: Promise<void> | undefined;
@@ -1681,6 +1706,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1681
1706
  [x: string]: string | undefined;
1682
1707
  } | undefined;
1683
1708
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1709
+ } & {
1710
+ getConf(arg: string): any;
1684
1711
  } & {
1685
1712
  readonly initialized: boolean;
1686
1713
  readonly name: string;
@@ -1735,6 +1762,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1735
1762
  [x: string]: string | undefined;
1736
1763
  } | undefined;
1737
1764
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1765
+ } & {
1766
+ getConf(arg: string): any;
1738
1767
  } & {
1739
1768
  readonly initialized: boolean;
1740
1769
  readonly name: string;
@@ -1805,6 +1834,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1805
1834
  [x: string]: string | undefined;
1806
1835
  } | undefined;
1807
1836
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1837
+ } & {
1838
+ getConf(arg: string): any;
1808
1839
  } & {
1809
1840
  readonly initialized: boolean;
1810
1841
  readonly name: string;
@@ -1835,10 +1866,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1835
1866
  }): void;
1836
1867
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1837
1868
  setLoadingP(p?: Promise<void> | undefined): void;
1838
- /**
1839
- * #getter
1840
- * list of config connections and session connections
1841
- */
1842
1869
  load(): Promise<void>;
1843
1870
  loadPre(): Promise<void>;
1844
1871
  } & {
@@ -1863,6 +1890,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1863
1890
  [x: string]: string | undefined;
1864
1891
  } | undefined;
1865
1892
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1893
+ } & {
1894
+ getConf(arg: string): any;
1866
1895
  } & {
1867
1896
  readonly initialized: boolean;
1868
1897
  readonly name: string;
@@ -1893,10 +1922,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
1893
1922
  }): void;
1894
1923
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1895
1924
  setLoadingP(p?: Promise<void> | undefined): void;
1896
- /**
1897
- * #getter
1898
- * list of config connections and session connections
1899
- */
1900
1925
  load(): Promise<void>;
1901
1926
  loadPre(): Promise<void>;
1902
1927
  } & {
@@ -2223,25 +2248,11 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
2223
2248
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
2224
2249
  setSubschema(slotName: string, data: unknown): any;
2225
2250
  } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
2226
- /**
2227
- * #volatile
2228
- */
2229
2251
  addConnectionConf(connectionConf: {
2230
2252
  [x: string]: any;
2231
2253
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
2232
2254
  setSubschema(slotName: string, data: unknown): any;
2233
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
2234
- name: {
2235
- type: string;
2236
- defaultValue: string;
2237
- description: string;
2238
- };
2239
- assemblyNames: {
2240
- type: string;
2241
- defaultValue: never[];
2242
- description: string;
2243
- };
2244
- }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>): any;
2255
+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
2245
2256
  clearConnections(): void;
2246
2257
  } & {
2247
2258
  addConnectionConf(connectionConf: {
@@ -2265,6 +2276,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
2265
2276
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
2266
2277
  setSubschema(slotName: string, data: unknown): any;
2267
2278
  } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
2279
+ } & {
2280
+ setFocusedViewId(viewId: string): void;
2268
2281
  } & {
2269
2282
  /**
2270
2283
  * #getter
@@ -2383,6 +2396,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
2383
2396
  [x: string]: string | undefined;
2384
2397
  } | undefined;
2385
2398
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2399
+ } & {
2400
+ getConf(arg: string): any;
2386
2401
  } & {
2387
2402
  readonly initialized: boolean;
2388
2403
  readonly name: string;
@@ -2419,7 +2434,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
2419
2434
  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
2420
2435
  getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2421
2436
  [x: string]: string | undefined;
2422
- }>;
2437
+ }>; /**
2438
+ * #getter
2439
+ */
2423
2440
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2424
2441
  [x: string]: string | undefined;
2425
2442
  }>;
@@ -2437,6 +2454,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
2437
2454
  [x: string]: string | undefined;
2438
2455
  } | undefined;
2439
2456
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2457
+ } & {
2458
+ getConf(arg: string): any;
2440
2459
  } & {
2441
2460
  readonly initialized: boolean;
2442
2461
  readonly name: string;
@@ -2473,133 +2492,135 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
2473
2492
  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
2474
2493
  getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2475
2494
  [x: string]: string | undefined;
2476
- }>;
2495
+ }>; /**
2496
+ * #getter
2497
+ */
2477
2498
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2478
2499
  [x: string]: string | undefined;
2479
2500
  }>;
2480
2501
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
2481
2502
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
2482
- readonly assemblyNameMap: {
2483
- [key: string]: ({
2484
- configuration: any;
2485
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
2486
- error: unknown;
2487
- loaded: boolean;
2488
- loadingP: Promise<void> | undefined;
2489
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2490
- refNameAliases: {
2491
- [x: string]: string | undefined;
2492
- } | undefined;
2493
- lowerCaseRefNameAliases: {
2494
- [x: string]: string | undefined;
2495
- } | undefined;
2496
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2497
- } & {
2498
- readonly initialized: boolean;
2499
- readonly name: string;
2500
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2501
- readonly aliases: string[];
2502
- readonly displayName: string | undefined;
2503
- hasName(name: string): boolean;
2504
- readonly allAliases: string[];
2505
- readonly allRefNames: string[] | undefined;
2506
- readonly lowerCaseRefNames: string[] | undefined;
2507
- readonly allRefNamesWithLowerCase: string[] | undefined; /**
2508
- * #getter
2509
- */
2510
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
2511
- readonly refNameColors: string[];
2512
- } & {
2513
- readonly refNames: string[] | undefined;
2514
- } & {
2515
- getCanonicalRefName(refName: string): string | undefined;
2516
- getRefNameColor(refName: string): string | undefined;
2517
- isValidRefName(refName: string): boolean; /**
2518
- * #getter
2519
- */
2520
- } & {
2521
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
2522
- setError(e: unknown): void;
2523
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
2524
- setRefNameAliases(aliases: {
2525
- [x: string]: string | undefined;
2526
- }, lcAliases: {
2527
- [x: string]: string | undefined;
2528
- }): void;
2529
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
2530
- setLoadingP(p?: Promise<void> | undefined): void; /**
2531
- * #getter
2532
- */
2533
- load(): Promise<void>;
2534
- loadPre(): Promise<void>;
2535
- } & {
2536
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
2537
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2538
- [x: string]: string | undefined;
2539
- }>;
2540
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2541
- [x: string]: string | undefined;
2542
- }>;
2543
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
2544
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
2545
- }, {
2546
- error: unknown;
2547
- loaded: boolean;
2548
- loadingP: Promise<void> | undefined;
2549
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2550
- refNameAliases: {
2551
- [x: string]: string | undefined;
2552
- } | undefined;
2553
- lowerCaseRefNameAliases: {
2554
- [x: string]: string | undefined;
2555
- } | undefined;
2556
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2557
- } & {
2558
- readonly initialized: boolean;
2559
- readonly name: string;
2560
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2561
- readonly aliases: string[];
2562
- readonly displayName: string | undefined;
2563
- hasName(name: string): boolean;
2564
- readonly allAliases: string[];
2565
- readonly allRefNames: string[] | undefined; /**
2566
- * #action
2567
- */
2568
- readonly lowerCaseRefNames: string[] | undefined;
2569
- readonly allRefNamesWithLowerCase: string[] | undefined; /**
2570
- * #action
2571
- */
2572
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
2573
- readonly refNameColors: string[];
2574
- } & {
2575
- readonly refNames: string[] | undefined;
2576
- } & {
2577
- getCanonicalRefName(refName: string): string | undefined;
2578
- getRefNameColor(refName: string): string | undefined;
2579
- isValidRefName(refName: string): boolean;
2580
- } & {
2581
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
2582
- setError(e: unknown): void;
2583
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
2584
- setRefNameAliases(aliases: {
2585
- [x: string]: string | undefined;
2586
- }, lcAliases: {
2587
- [x: string]: string | undefined;
2588
- }): void;
2589
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
2590
- setLoadingP(p?: Promise<void> | undefined): void;
2591
- load(): Promise<void>;
2592
- loadPre(): Promise<void>;
2593
- } & {
2594
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
2595
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2596
- [x: string]: string | undefined;
2597
- }>;
2598
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2599
- [x: string]: string | undefined;
2600
- }>;
2601
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
2602
- };
2503
+ readonly assemblyNameMap: Record<string, ({
2504
+ configuration: any;
2505
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
2506
+ error: unknown;
2507
+ loaded: boolean;
2508
+ loadingP: Promise<void> | undefined;
2509
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2510
+ refNameAliases: {
2511
+ [x: string]: string | undefined;
2512
+ } | undefined;
2513
+ lowerCaseRefNameAliases: {
2514
+ [x: string]: string | undefined;
2515
+ } | undefined;
2516
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2517
+ } & {
2518
+ getConf(arg: string): any;
2519
+ } & {
2520
+ readonly initialized: boolean;
2521
+ readonly name: string;
2522
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2523
+ readonly aliases: string[];
2524
+ readonly displayName: string | undefined;
2525
+ hasName(name: string): boolean;
2526
+ readonly allAliases: string[];
2527
+ readonly allRefNames: string[] | undefined;
2528
+ readonly lowerCaseRefNames: string[] | undefined;
2529
+ readonly allRefNamesWithLowerCase: string[] | undefined;
2530
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
2531
+ readonly refNameColors: string[];
2532
+ } & {
2533
+ readonly refNames: string[] | undefined;
2534
+ } & {
2535
+ getCanonicalRefName(refName: string): string | undefined;
2536
+ getRefNameColor(refName: string): string | undefined;
2537
+ isValidRefName(refName: string): boolean;
2538
+ } & {
2539
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
2540
+ setError(e: unknown): void;
2541
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
2542
+ setRefNameAliases(aliases: {
2543
+ [x: string]: string | undefined;
2544
+ }, lcAliases: {
2545
+ [x: string]: string | undefined;
2546
+ }): void;
2547
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void; /**
2548
+ * #getter
2549
+ */
2550
+ setLoadingP(p?: Promise<void> | undefined): void;
2551
+ load(): Promise<void>;
2552
+ loadPre(): Promise<void>; /**
2553
+ * #getter
2554
+ */
2555
+ } & {
2556
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
2557
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2558
+ [x: string]: string | undefined;
2559
+ }>;
2560
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2561
+ [x: string]: string | undefined;
2562
+ }>;
2563
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
2564
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
2565
+ }, {
2566
+ error: unknown;
2567
+ loaded: boolean;
2568
+ loadingP: Promise<void> | undefined;
2569
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2570
+ refNameAliases: {
2571
+ [x: string]: string | undefined;
2572
+ } | undefined;
2573
+ lowerCaseRefNameAliases: {
2574
+ [x: string]: string | undefined;
2575
+ } | undefined;
2576
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2577
+ } & {
2578
+ getConf(arg: string): any;
2579
+ } & {
2580
+ readonly initialized: boolean;
2581
+ readonly name: string;
2582
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
2583
+ readonly aliases: string[];
2584
+ readonly displayName: string | undefined;
2585
+ hasName(name: string): boolean;
2586
+ readonly allAliases: string[];
2587
+ readonly allRefNames: string[] | undefined;
2588
+ readonly lowerCaseRefNames: string[] | undefined;
2589
+ readonly allRefNamesWithLowerCase: string[] | undefined;
2590
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
2591
+ readonly refNameColors: string[];
2592
+ } & {
2593
+ readonly refNames: string[] | undefined;
2594
+ } & {
2595
+ getCanonicalRefName(refName: string): string | undefined;
2596
+ getRefNameColor(refName: string): string | undefined;
2597
+ isValidRefName(refName: string): boolean;
2598
+ } & {
2599
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
2600
+ setError(e: unknown): void;
2601
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
2602
+ setRefNameAliases(aliases: {
2603
+ [x: string]: string | undefined;
2604
+ }, lcAliases: {
2605
+ [x: string]: string | undefined;
2606
+ }): void;
2607
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
2608
+ setLoadingP(p?: Promise<void> | undefined): void;
2609
+ load(): Promise<void>; /**
2610
+ * #action
2611
+ */
2612
+ loadPre(): Promise<void>;
2613
+ } & {
2614
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>; /**
2615
+ * #action
2616
+ */
2617
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2618
+ [x: string]: string | undefined;
2619
+ }>;
2620
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
2621
+ [x: string]: string | undefined;
2622
+ }>;
2623
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
2603
2624
  } & {
2604
2625
  get(asmName: string): ({
2605
2626
  configuration: any;
@@ -2615,6 +2636,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
2615
2636
  [x: string]: string | undefined;
2616
2637
  } | undefined;
2617
2638
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2639
+ } & {
2640
+ getConf(arg: string): any;
2618
2641
  } & {
2619
2642
  readonly initialized: boolean;
2620
2643
  readonly name: string;
@@ -2669,6 +2692,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
2669
2692
  [x: string]: string | undefined;
2670
2693
  } | undefined;
2671
2694
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2695
+ } & {
2696
+ getConf(arg: string): any;
2672
2697
  } & {
2673
2698
  readonly initialized: boolean;
2674
2699
  readonly name: string;
@@ -2732,6 +2757,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
2732
2757
  [x: string]: string | undefined;
2733
2758
  } | undefined;
2734
2759
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2760
+ } & {
2761
+ getConf(arg: string): any;
2735
2762
  } & {
2736
2763
  readonly initialized: boolean;
2737
2764
  readonly name: string;
@@ -2786,6 +2813,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
2786
2813
  [x: string]: string | undefined;
2787
2814
  } | undefined;
2788
2815
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2816
+ } & {
2817
+ getConf(arg: string): any;
2789
2818
  } & {
2790
2819
  readonly initialized: boolean;
2791
2820
  readonly name: string;
@@ -2856,6 +2885,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
2856
2885
  [x: string]: string | undefined;
2857
2886
  } | undefined;
2858
2887
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2888
+ } & {
2889
+ getConf(arg: string): any;
2859
2890
  } & {
2860
2891
  readonly initialized: boolean;
2861
2892
  readonly name: string;
@@ -2886,10 +2917,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
2886
2917
  }): void;
2887
2918
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
2888
2919
  setLoadingP(p?: Promise<void> | undefined): void;
2889
- /**
2890
- * #getter
2891
- * list of config connections and session connections
2892
- */
2893
2920
  load(): Promise<void>;
2894
2921
  loadPre(): Promise<void>;
2895
2922
  } & {
@@ -2914,6 +2941,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
2914
2941
  [x: string]: string | undefined;
2915
2942
  } | undefined;
2916
2943
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
2944
+ } & {
2945
+ getConf(arg: string): any;
2917
2946
  } & {
2918
2947
  readonly initialized: boolean;
2919
2948
  readonly name: string;
@@ -2944,10 +2973,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
2944
2973
  }): void;
2945
2974
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
2946
2975
  setLoadingP(p?: Promise<void> | undefined): void;
2947
- /**
2948
- * #getter
2949
- * list of config connections and session connections
2950
- */
2951
2976
  load(): Promise<void>;
2952
2977
  loadPre(): Promise<void>;
2953
2978
  } & {
@@ -2976,6 +3001,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
2976
3001
  [x: string]: string | undefined;
2977
3002
  } | undefined;
2978
3003
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
3004
+ } & {
3005
+ getConf(arg: string): any;
2979
3006
  } & {
2980
3007
  readonly initialized: boolean;
2981
3008
  readonly name: string;
@@ -3012,133 +3039,135 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
3012
3039
  getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
3013
3040
  getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
3014
3041
  [x: string]: string | undefined;
3015
- }>;
3042
+ }>; /**
3043
+ * #getter
3044
+ */
3016
3045
  getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
3017
3046
  [x: string]: string | undefined;
3018
3047
  }>;
3019
3048
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
3020
3049
  }, {
3021
- readonly assemblyNameMap: {
3022
- [key: string]: ({
3023
- configuration: any;
3024
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
3025
- error: unknown;
3026
- loaded: boolean;
3027
- loadingP: Promise<void> | undefined;
3028
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
3029
- refNameAliases: {
3030
- [x: string]: string | undefined;
3031
- } | undefined;
3032
- lowerCaseRefNameAliases: {
3033
- [x: string]: string | undefined;
3034
- } | undefined;
3035
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
3036
- } & {
3037
- readonly initialized: boolean;
3038
- readonly name: string;
3039
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
3040
- readonly aliases: string[];
3041
- readonly displayName: string | undefined;
3042
- hasName(name: string): boolean;
3043
- readonly allAliases: string[];
3044
- readonly allRefNames: string[] | undefined;
3045
- readonly lowerCaseRefNames: string[] | undefined;
3046
- readonly allRefNamesWithLowerCase: string[] | undefined; /**
3047
- * #getter
3048
- */
3049
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
3050
- readonly refNameColors: string[];
3051
- } & {
3052
- readonly refNames: string[] | undefined;
3053
- } & {
3054
- getCanonicalRefName(refName: string): string | undefined;
3055
- getRefNameColor(refName: string): string | undefined;
3056
- isValidRefName(refName: string): boolean; /**
3057
- * #getter
3058
- */
3059
- } & {
3060
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
3061
- setError(e: unknown): void;
3062
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
3063
- setRefNameAliases(aliases: {
3064
- [x: string]: string | undefined;
3065
- }, lcAliases: {
3066
- [x: string]: string | undefined;
3067
- }): void;
3068
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
3069
- setLoadingP(p?: Promise<void> | undefined): void; /**
3070
- * #getter
3071
- */
3072
- load(): Promise<void>;
3073
- loadPre(): Promise<void>;
3074
- } & {
3075
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
3076
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
3077
- [x: string]: string | undefined;
3078
- }>;
3079
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
3080
- [x: string]: string | undefined;
3081
- }>;
3082
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
3083
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
3084
- }, {
3085
- error: unknown;
3086
- loaded: boolean;
3087
- loadingP: Promise<void> | undefined;
3088
- volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
3089
- refNameAliases: {
3090
- [x: string]: string | undefined;
3091
- } | undefined;
3092
- lowerCaseRefNameAliases: {
3093
- [x: string]: string | undefined;
3094
- } | undefined;
3095
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
3096
- } & {
3097
- readonly initialized: boolean;
3098
- readonly name: string;
3099
- readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
3100
- readonly aliases: string[];
3101
- readonly displayName: string | undefined;
3102
- hasName(name: string): boolean;
3103
- readonly allAliases: string[];
3104
- readonly allRefNames: string[] | undefined; /**
3105
- * #action
3106
- */
3107
- readonly lowerCaseRefNames: string[] | undefined;
3108
- readonly allRefNamesWithLowerCase: string[] | undefined; /**
3109
- * #action
3110
- */
3111
- readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
3112
- readonly refNameColors: string[];
3113
- } & {
3114
- readonly refNames: string[] | undefined;
3115
- } & {
3116
- getCanonicalRefName(refName: string): string | undefined;
3117
- getRefNameColor(refName: string): string | undefined;
3118
- isValidRefName(refName: string): boolean;
3119
- } & {
3120
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
3121
- setError(e: unknown): void;
3122
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
3123
- setRefNameAliases(aliases: {
3124
- [x: string]: string | undefined;
3125
- }, lcAliases: {
3126
- [x: string]: string | undefined;
3127
- }): void;
3128
- setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
3129
- setLoadingP(p?: Promise<void> | undefined): void;
3130
- load(): Promise<void>;
3131
- loadPre(): Promise<void>;
3132
- } & {
3133
- getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
3134
- getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
3135
- [x: string]: string | undefined;
3136
- }>;
3137
- getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
3138
- [x: string]: string | undefined;
3139
- }>;
3140
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
3141
- };
3050
+ readonly assemblyNameMap: Record<string, ({
3051
+ configuration: any;
3052
+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
3053
+ error: unknown;
3054
+ loaded: boolean;
3055
+ loadingP: Promise<void> | undefined;
3056
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
3057
+ refNameAliases: {
3058
+ [x: string]: string | undefined;
3059
+ } | undefined;
3060
+ lowerCaseRefNameAliases: {
3061
+ [x: string]: string | undefined;
3062
+ } | undefined;
3063
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
3064
+ } & {
3065
+ getConf(arg: string): any;
3066
+ } & {
3067
+ readonly initialized: boolean;
3068
+ readonly name: string;
3069
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
3070
+ readonly aliases: string[];
3071
+ readonly displayName: string | undefined;
3072
+ hasName(name: string): boolean;
3073
+ readonly allAliases: string[];
3074
+ readonly allRefNames: string[] | undefined;
3075
+ readonly lowerCaseRefNames: string[] | undefined;
3076
+ readonly allRefNamesWithLowerCase: string[] | undefined;
3077
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
3078
+ readonly refNameColors: string[];
3079
+ } & {
3080
+ readonly refNames: string[] | undefined;
3081
+ } & {
3082
+ getCanonicalRefName(refName: string): string | undefined;
3083
+ getRefNameColor(refName: string): string | undefined;
3084
+ isValidRefName(refName: string): boolean;
3085
+ } & {
3086
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
3087
+ setError(e: unknown): void;
3088
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
3089
+ setRefNameAliases(aliases: {
3090
+ [x: string]: string | undefined;
3091
+ }, lcAliases: {
3092
+ [x: string]: string | undefined;
3093
+ }): void;
3094
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void; /**
3095
+ * #getter
3096
+ */
3097
+ setLoadingP(p?: Promise<void> | undefined): void;
3098
+ load(): Promise<void>;
3099
+ loadPre(): Promise<void>; /**
3100
+ * #getter
3101
+ */
3102
+ } & {
3103
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
3104
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
3105
+ [x: string]: string | undefined;
3106
+ }>;
3107
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
3108
+ [x: string]: string | undefined;
3109
+ }>;
3110
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
3111
+ configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
3112
+ }, {
3113
+ error: unknown;
3114
+ loaded: boolean;
3115
+ loadingP: Promise<void> | undefined;
3116
+ volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
3117
+ refNameAliases: {
3118
+ [x: string]: string | undefined;
3119
+ } | undefined;
3120
+ lowerCaseRefNameAliases: {
3121
+ [x: string]: string | undefined;
3122
+ } | undefined;
3123
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
3124
+ } & {
3125
+ getConf(arg: string): any;
3126
+ } & {
3127
+ readonly initialized: boolean;
3128
+ readonly name: string;
3129
+ readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
3130
+ readonly aliases: string[];
3131
+ readonly displayName: string | undefined;
3132
+ hasName(name: string): boolean;
3133
+ readonly allAliases: string[];
3134
+ readonly allRefNames: string[] | undefined;
3135
+ readonly lowerCaseRefNames: string[] | undefined;
3136
+ readonly allRefNamesWithLowerCase: string[] | undefined;
3137
+ readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
3138
+ readonly refNameColors: string[];
3139
+ } & {
3140
+ readonly refNames: string[] | undefined;
3141
+ } & {
3142
+ getCanonicalRefName(refName: string): string | undefined;
3143
+ getRefNameColor(refName: string): string | undefined;
3144
+ isValidRefName(refName: string): boolean;
3145
+ } & {
3146
+ setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
3147
+ setError(e: unknown): void;
3148
+ setRegions(regions: import("@jbrowse/core/util").Region[]): void;
3149
+ setRefNameAliases(aliases: {
3150
+ [x: string]: string | undefined;
3151
+ }, lcAliases: {
3152
+ [x: string]: string | undefined;
3153
+ }): void;
3154
+ setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
3155
+ setLoadingP(p?: Promise<void> | undefined): void;
3156
+ load(): Promise<void>; /**
3157
+ * #action
3158
+ */
3159
+ loadPre(): Promise<void>;
3160
+ } & {
3161
+ getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>; /**
3162
+ * #action
3163
+ */
3164
+ getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
3165
+ [x: string]: string | undefined;
3166
+ }>;
3167
+ getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
3168
+ [x: string]: string | undefined;
3169
+ }>;
3170
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
3142
3171
  } & {
3143
3172
  get(asmName: string): ({
3144
3173
  configuration: any;
@@ -3154,6 +3183,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
3154
3183
  [x: string]: string | undefined;
3155
3184
  } | undefined;
3156
3185
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
3186
+ } & {
3187
+ getConf(arg: string): any;
3157
3188
  } & {
3158
3189
  readonly initialized: boolean;
3159
3190
  readonly name: string;
@@ -3208,6 +3239,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
3208
3239
  [x: string]: string | undefined;
3209
3240
  } | undefined;
3210
3241
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
3242
+ } & {
3243
+ getConf(arg: string): any;
3211
3244
  } & {
3212
3245
  readonly initialized: boolean;
3213
3246
  readonly name: string;
@@ -3271,6 +3304,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
3271
3304
  [x: string]: string | undefined;
3272
3305
  } | undefined;
3273
3306
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
3307
+ } & {
3308
+ getConf(arg: string): any;
3274
3309
  } & {
3275
3310
  readonly initialized: boolean;
3276
3311
  readonly name: string;
@@ -3325,6 +3360,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
3325
3360
  [x: string]: string | undefined;
3326
3361
  } | undefined;
3327
3362
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
3363
+ } & {
3364
+ getConf(arg: string): any;
3328
3365
  } & {
3329
3366
  readonly initialized: boolean;
3330
3367
  readonly name: string;
@@ -3395,6 +3432,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
3395
3432
  [x: string]: string | undefined;
3396
3433
  } | undefined;
3397
3434
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
3435
+ } & {
3436
+ getConf(arg: string): any;
3398
3437
  } & {
3399
3438
  readonly initialized: boolean;
3400
3439
  readonly name: string;
@@ -3425,10 +3464,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
3425
3464
  }): void;
3426
3465
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
3427
3466
  setLoadingP(p?: Promise<void> | undefined): void;
3428
- /**
3429
- * #getter
3430
- * list of config connections and session connections
3431
- */
3432
3467
  load(): Promise<void>;
3433
3468
  loadPre(): Promise<void>;
3434
3469
  } & {
@@ -3453,6 +3488,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
3453
3488
  [x: string]: string | undefined;
3454
3489
  } | undefined;
3455
3490
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
3491
+ } & {
3492
+ getConf(arg: string): any;
3456
3493
  } & {
3457
3494
  readonly initialized: boolean;
3458
3495
  readonly name: string;
@@ -3483,10 +3520,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
3483
3520
  }): void;
3484
3521
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
3485
3522
  setLoadingP(p?: Promise<void> | undefined): void;
3486
- /**
3487
- * #getter
3488
- * list of config connections and session connections
3489
- */
3490
3523
  load(): Promise<void>;
3491
3524
  loadPre(): Promise<void>;
3492
3525
  } & {
@@ -3621,6 +3654,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
3621
3654
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
3622
3655
  } & {
3623
3656
  sessionConnections: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
3657
+ } & {
3658
+ focusedViewId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
3624
3659
  } & {
3625
3660
  margin: import("mobx-state-tree").IType<number | undefined, number, number>;
3626
3661
  sessionPlugins: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<any, any, any>>;
@@ -3736,6 +3771,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
3736
3771
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
3737
3772
  } & {
3738
3773
  sessionConnections: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
3774
+ } & {
3775
+ focusedViewId: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
3739
3776
  } & {
3740
3777
  margin: import("mobx-state-tree").IType<number | undefined, number, number>;
3741
3778
  sessionPlugins: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<any, any, any>>;