@jbrowse/web-core 2.16.1 → 2.18.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseWebSession/index.d.ts +82 -489
- package/dist/BaseWebSession/index.js +30 -168
- package/dist/SessionConnections.d.ts +3 -10
- package/dist/SessionConnections.js +1 -8
- package/esm/BaseWebSession/index.d.ts +82 -489
- package/esm/BaseWebSession/index.js +31 -169
- package/esm/SessionConnections.d.ts +3 -10
- package/esm/SessionConnections.js +1 -8
- package/package.json +4 -5
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import {
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import {
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import
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import
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import
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import
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import { BaseTrackConfig } from '@jbrowse/core/pluggableElementTypes';
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import {
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import {
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* #stateModel BaseWebSession
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* used for "web based" products, including jbrowse-web and react-app
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* composed of
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* - [ReferenceManagementSessionMixin](../referencemanagementsessionmixin)
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* - [DrawerWidgetSessionMixin](../drawerwidgetsessionmixin)
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* - [DialogQueueSessionMixin](../dialogqueuesessionmixin)
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* - [ThemeManagerSessionMixin](../thememanagersessionmixin)
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* - [MultipleViewsSessionMixin](../multipleviewssessionmixin)
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* - [SessionTracksManagerSessionMixin](../sessiontracksmanagersessionmixin)
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* - [SessionAssembliesMixin](../sessionassembliesmixin)
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* - [TemporaryAssembliesMixin](../temporaryassembliesmixin)
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* - [WebSessionConnectionsMixin](../websessionconnectionsmixin)
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* - [AppFocusMixin](../appfocusmixin)
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*/
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import type { Menu } from '@jbrowse/app-core';
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import type { PluginDefinition } from '@jbrowse/core/PluginLoader';
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import type PluginManager from '@jbrowse/core/PluginManager';
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import type TextSearchManager from '@jbrowse/core/TextSearch/TextSearchManager';
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import type { BaseAssemblyConfigSchema } from '@jbrowse/core/assemblyManager';
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import type { AnyConfiguration, AnyConfigurationModel } from '@jbrowse/core/configuration';
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import type { BaseTrackConfig } from '@jbrowse/core/pluggableElementTypes';
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import type { BaseConnectionConfigModel } from '@jbrowse/core/pluggableElementTypes/models/baseConnectionConfig';
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import type { JBrowsePlugin } from '@jbrowse/core/util/types';
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import type { SnapshotIn } from 'mobx-state-tree';
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export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }: {
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pluginManager: PluginManager;
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assemblyConfigSchema: BaseAssemblyConfigSchema;
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getRefNameMapForAdapter(adapterConf: {
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}, assemblyName: string | undefined, opts: {
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stopToken?: string;
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sessionId: string;
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}): Promise<{
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[x: string]: string;
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getReverseRefNameMapForAdapter(adapterConf: {
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}, assemblyName: string | undefined, opts: {
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stopToken?: string;
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sessionId: string;
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}): Promise<{
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[x: string]: string;
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getRefNameMapForAdapter(adapterConf: {
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}, assemblyName: string | undefined, opts: {
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stopToken?: string;
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sessionId: string;
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}): Promise<{
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[x: string]: string;
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getReverseRefNameMapForAdapter(adapterConf: {
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}, assemblyName: string | undefined, opts: {
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stopToken?: string;
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sessionId: string;
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}): Promise<{
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getRefNameMapForAdapter(adapterConf: {
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}, assemblyName: string | undefined, opts: {
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stopToken?: string;
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sessionId: string;
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}): Promise<{
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[x: string]: string;
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getReverseRefNameMapForAdapter(adapterConf: {
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}, assemblyName: string | undefined, opts: {
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stopToken?: string;
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sessionId: string;
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}): Promise<{
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description: string;
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>>) | undefined;
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addAssembly(conf: AnyConfiguration): void;
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removeAssembly(name: string): void;
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removeSessionAssembly(assemblyName: string): void;
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} & {
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addTemporaryAssembly(conf: AnyConfiguration): any;
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popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
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removeSnackbarMessage(message: string): void;
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} & {
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/**
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* #volatile
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sessionThemeName: string;
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/**
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* #volatile
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* this is the current "task" that is being performed in the UI.
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* this is usually an object of the form
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* `{ taskName: "configure", target: thing_being_configured }`
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task: undefined;
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} & {
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* #getter
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*/
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readonly tracks: ({
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[x: string]: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
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readonly root: any;
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* #getter
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* list of sessionAssemblies and jbrowse config assemblies, does not
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* include temporaryAssemblies. basically the list to be displayed in a
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* AssemblySelector dropdown
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readonly assemblies: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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aliases: {
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type: string;
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>[];
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* list of config connections and session connections
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readonly connections: ({
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[x: string]: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>)[];
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setName(str: string): void;
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readonly version: any;
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readonly textSearchManager: TextSearchManager;
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assemblies: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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readonly previousAutosaveId: any;
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renderProps(): {
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theme: import("@mui/material").Theme;
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addAssemblyConf(conf: AnyConfiguration): void;
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addSessionPlugin(plugin: JBrowsePlugin): void;
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setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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* - [ThemeManagerSessionMixin](../thememanagersessionmixin)
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* - [MultipleViewsSessionMixin](../multipleviewssessionmixin)
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*/
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+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
3487
3381
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
3488
3382
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | Record<string, unknown>): any;
|
|
3489
3383
|
addTrackConfs(trackConfs: (({
|
|
@@ -4166,7 +4060,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
4166
4060
|
getRefNameMapForAdapter(adapterConf: {
|
|
4167
4061
|
[x: string]: unknown;
|
|
4168
4062
|
}, assemblyName: string | undefined, opts: {
|
|
4169
|
-
|
|
4063
|
+
stopToken?: string;
|
|
4170
4064
|
sessionId: string;
|
|
4171
4065
|
}): Promise<{
|
|
4172
4066
|
[x: string]: string;
|
|
@@ -4174,7 +4068,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
4174
4068
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
4175
4069
|
[x: string]: unknown;
|
|
4176
4070
|
}, assemblyName: string | undefined, opts: {
|
|
4177
|
-
|
|
4071
|
+
stopToken?: string;
|
|
4178
4072
|
sessionId: string;
|
|
4179
4073
|
}): Promise<{
|
|
4180
4074
|
[x: string]: string;
|
|
@@ -4688,7 +4582,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
4688
4582
|
getRefNameMapForAdapter(adapterConf: {
|
|
4689
4583
|
[x: string]: unknown;
|
|
4690
4584
|
}, assemblyName: string | undefined, opts: {
|
|
4691
|
-
|
|
4585
|
+
stopToken?: string;
|
|
4692
4586
|
sessionId: string;
|
|
4693
4587
|
}): Promise<{
|
|
4694
4588
|
[x: string]: string;
|
|
@@ -4696,7 +4590,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
4696
4590
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
4697
4591
|
[x: string]: unknown;
|
|
4698
4592
|
}, assemblyName: string | undefined, opts: {
|
|
4699
|
-
|
|
4593
|
+
stopToken?: string;
|
|
4700
4594
|
sessionId: string;
|
|
4701
4595
|
}): Promise<{
|
|
4702
4596
|
[x: string]: string;
|
|
@@ -5227,7 +5121,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
5227
5121
|
getRefNameMapForAdapter(adapterConf: {
|
|
5228
5122
|
[x: string]: unknown;
|
|
5229
5123
|
}, assemblyName: string | undefined, opts: {
|
|
5230
|
-
|
|
5124
|
+
stopToken?: string;
|
|
5231
5125
|
sessionId: string;
|
|
5232
5126
|
}): Promise<{
|
|
5233
5127
|
[x: string]: string;
|
|
@@ -5235,7 +5129,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
5235
5129
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
5236
5130
|
[x: string]: unknown;
|
|
5237
5131
|
}, assemblyName: string | undefined, opts: {
|
|
5238
|
-
|
|
5132
|
+
stopToken?: string;
|
|
5239
5133
|
sessionId: string;
|
|
5240
5134
|
}): Promise<{
|
|
5241
5135
|
[x: string]: string;
|
|
@@ -5391,6 +5285,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
5391
5285
|
description: string;
|
|
5392
5286
|
};
|
|
5393
5287
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>>) | undefined;
|
|
5288
|
+
addAssembly(conf: AnyConfiguration): void;
|
|
5289
|
+
removeAssembly(name: string): void;
|
|
5394
5290
|
removeSessionAssembly(assemblyName: string): void;
|
|
5395
5291
|
} & {
|
|
5396
5292
|
addTemporaryAssembly(conf: AnyConfiguration): any;
|
|
@@ -5537,21 +5433,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
5537
5433
|
popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
|
|
5538
5434
|
removeSnackbarMessage(message: string): void;
|
|
5539
5435
|
} & {
|
|
5540
|
-
/**
|
|
5541
|
-
* #volatile
|
|
5542
|
-
*/
|
|
5543
5436
|
sessionThemeName: string;
|
|
5544
|
-
/**
|
|
5545
|
-
* #volatile
|
|
5546
|
-
* this is the current "task" that is being performed in the UI.
|
|
5547
|
-
* this is usually an object of the form
|
|
5548
|
-
* `{ taskName: "configure", target: thing_being_configured }`
|
|
5549
|
-
*/
|
|
5550
5437
|
task: undefined;
|
|
5551
5438
|
} & {
|
|
5552
|
-
/**
|
|
5553
|
-
* #getter
|
|
5554
|
-
*/
|
|
5555
5439
|
readonly tracks: ({
|
|
5556
5440
|
[x: string]: any;
|
|
5557
5441
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
@@ -5563,16 +5447,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
5563
5447
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
5564
5448
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
5565
5449
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
5566
|
-
/**
|
|
5567
|
-
* #getter
|
|
5568
|
-
*/
|
|
5569
5450
|
readonly root: any;
|
|
5570
|
-
/**
|
|
5571
|
-
* #getter
|
|
5572
|
-
* list of sessionAssemblies and jbrowse config assemblies, does not
|
|
5573
|
-
* include temporaryAssemblies. basically the list to be displayed in a
|
|
5574
|
-
* AssemblySelector dropdown
|
|
5575
|
-
*/
|
|
5576
5451
|
readonly assemblies: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
5577
5452
|
aliases: {
|
|
5578
5453
|
type: string;
|
|
@@ -5597,10 +5472,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
5597
5472
|
description: string;
|
|
5598
5473
|
};
|
|
5599
5474
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>[];
|
|
5600
|
-
/**
|
|
5601
|
-
* #getter
|
|
5602
|
-
* list of config connections and session connections
|
|
5603
|
-
*/
|
|
5604
5475
|
readonly connections: ({
|
|
5605
5476
|
[x: string]: any;
|
|
5606
5477
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
@@ -5624,33 +5495,12 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
5624
5495
|
};
|
|
5625
5496
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>)[];
|
|
5626
5497
|
} & {
|
|
5627
|
-
/**
|
|
5628
|
-
* #action
|
|
5629
|
-
*/
|
|
5630
5498
|
setName(str: string): void;
|
|
5631
5499
|
} & {
|
|
5632
|
-
/**
|
|
5633
|
-
* #getter
|
|
5634
|
-
* list of sessionAssemblies and jbrowse config assemblies, does not
|
|
5635
|
-
* include temporaryAssemblies. basically the list to be displayed in a
|
|
5636
|
-
* AssemblySelector dropdown
|
|
5637
|
-
*/
|
|
5638
5500
|
readonly assemblyNames: string[];
|
|
5639
|
-
/**
|
|
5640
|
-
* #getter
|
|
5641
|
-
*/
|
|
5642
5501
|
readonly version: any;
|
|
5643
|
-
/**
|
|
5644
|
-
* #getter
|
|
5645
|
-
*/
|
|
5646
5502
|
readonly shareURL: any;
|
|
5647
|
-
/**
|
|
5648
|
-
* #getter
|
|
5649
|
-
*/
|
|
5650
5503
|
readonly textSearchManager: TextSearchManager;
|
|
5651
|
-
/**
|
|
5652
|
-
* #getter
|
|
5653
|
-
*/
|
|
5654
5504
|
readonly assemblyManager: {
|
|
5655
5505
|
assemblies: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
|
|
5656
5506
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
@@ -6225,7 +6075,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
6225
6075
|
getRefNameMapForAdapter(adapterConf: {
|
|
6226
6076
|
[x: string]: unknown;
|
|
6227
6077
|
}, assemblyName: string | undefined, opts: {
|
|
6228
|
-
|
|
6078
|
+
stopToken?: string;
|
|
6229
6079
|
sessionId: string;
|
|
6230
6080
|
}): Promise<{
|
|
6231
6081
|
[x: string]: string;
|
|
@@ -6233,7 +6083,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
6233
6083
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
6234
6084
|
[x: string]: unknown;
|
|
6235
6085
|
}, assemblyName: string | undefined, opts: {
|
|
6236
|
-
|
|
6086
|
+
stopToken?: string;
|
|
6237
6087
|
sessionId: string;
|
|
6238
6088
|
}): Promise<{
|
|
6239
6089
|
[x: string]: string;
|
|
@@ -6747,7 +6597,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
6747
6597
|
getRefNameMapForAdapter(adapterConf: {
|
|
6748
6598
|
[x: string]: unknown;
|
|
6749
6599
|
}, assemblyName: string | undefined, opts: {
|
|
6750
|
-
|
|
6600
|
+
stopToken?: string;
|
|
6751
6601
|
sessionId: string;
|
|
6752
6602
|
}): Promise<{
|
|
6753
6603
|
[x: string]: string;
|
|
@@ -6755,7 +6605,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
6755
6605
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
6756
6606
|
[x: string]: unknown;
|
|
6757
6607
|
}, assemblyName: string | undefined, opts: {
|
|
6758
|
-
|
|
6608
|
+
stopToken?: string;
|
|
6759
6609
|
sessionId: string;
|
|
6760
6610
|
}): Promise<{
|
|
6761
6611
|
[x: string]: string;
|
|
@@ -6766,29 +6616,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
6766
6616
|
removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
|
|
6767
6617
|
addAssembly(configuration: any): void;
|
|
6768
6618
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
6769
|
-
|
|
6770
|
-
* #getter
|
|
6771
|
-
*/
|
|
6772
|
-
readonly savedSessions: any;
|
|
6773
|
-
/**
|
|
6774
|
-
* #getter
|
|
6775
|
-
*/
|
|
6619
|
+
readonly savedSessionMetadata: any;
|
|
6776
6620
|
readonly previousAutosaveId: any;
|
|
6777
|
-
/**
|
|
6778
|
-
* #getter
|
|
6779
|
-
*/
|
|
6780
|
-
readonly savedSessionNames: any;
|
|
6781
|
-
/**
|
|
6782
|
-
* #getter
|
|
6783
|
-
*/
|
|
6784
6621
|
readonly history: any;
|
|
6785
|
-
/**
|
|
6786
|
-
* #getter
|
|
6787
|
-
*/
|
|
6788
|
-
readonly menus: any;
|
|
6789
|
-
/**
|
|
6790
|
-
* #method
|
|
6791
|
-
*/
|
|
6792
6622
|
renderProps(): {
|
|
6793
6623
|
theme: import("@mui/material").Theme;
|
|
6794
6624
|
highResolutionScaling: any;
|
|
@@ -7506,7 +7336,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
7506
7336
|
getRefNameMapForAdapter(adapterConf: {
|
|
7507
7337
|
[x: string]: unknown;
|
|
7508
7338
|
}, assemblyName: string | undefined, opts: {
|
|
7509
|
-
|
|
7339
|
+
stopToken?: string;
|
|
7510
7340
|
sessionId: string;
|
|
7511
7341
|
}): Promise<{
|
|
7512
7342
|
[x: string]: string;
|
|
@@ -7514,7 +7344,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
7514
7344
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
7515
7345
|
[x: string]: unknown;
|
|
7516
7346
|
}, assemblyName: string | undefined, opts: {
|
|
7517
|
-
|
|
7347
|
+
stopToken?: string;
|
|
7518
7348
|
sessionId: string;
|
|
7519
7349
|
}): Promise<{
|
|
7520
7350
|
[x: string]: string;
|
|
@@ -8028,7 +7858,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
8028
7858
|
getRefNameMapForAdapter(adapterConf: {
|
|
8029
7859
|
[x: string]: unknown;
|
|
8030
7860
|
}, assemblyName: string | undefined, opts: {
|
|
8031
|
-
|
|
7861
|
+
stopToken?: string;
|
|
8032
7862
|
sessionId: string;
|
|
8033
7863
|
}): Promise<{
|
|
8034
7864
|
[x: string]: string;
|
|
@@ -8036,7 +7866,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
8036
7866
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
8037
7867
|
[x: string]: unknown;
|
|
8038
7868
|
}, assemblyName: string | undefined, opts: {
|
|
8039
|
-
|
|
7869
|
+
stopToken?: string;
|
|
8040
7870
|
sessionId: string;
|
|
8041
7871
|
}): Promise<{
|
|
8042
7872
|
[x: string]: string;
|
|
@@ -8567,7 +8397,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
8567
8397
|
getRefNameMapForAdapter(adapterConf: {
|
|
8568
8398
|
[x: string]: unknown;
|
|
8569
8399
|
}, assemblyName: string | undefined, opts: {
|
|
8570
|
-
|
|
8400
|
+
stopToken?: string;
|
|
8571
8401
|
sessionId: string;
|
|
8572
8402
|
}): Promise<{
|
|
8573
8403
|
[x: string]: string;
|
|
@@ -8575,7 +8405,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
8575
8405
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
8576
8406
|
[x: string]: unknown;
|
|
8577
8407
|
}, assemblyName: string | undefined, opts: {
|
|
8578
|
-
|
|
8408
|
+
stopToken?: string;
|
|
8579
8409
|
sessionId: string;
|
|
8580
8410
|
}): Promise<{
|
|
8581
8411
|
[x: string]: string;
|
|
@@ -8731,6 +8561,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
8731
8561
|
description: string;
|
|
8732
8562
|
};
|
|
8733
8563
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>>) | undefined;
|
|
8564
|
+
addAssembly(conf: AnyConfiguration): void;
|
|
8565
|
+
removeAssembly(name: string): void;
|
|
8734
8566
|
removeSessionAssembly(assemblyName: string): void;
|
|
8735
8567
|
} & {
|
|
8736
8568
|
addTemporaryAssembly(conf: AnyConfiguration): any;
|
|
@@ -8877,21 +8709,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
8877
8709
|
popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
|
|
8878
8710
|
removeSnackbarMessage(message: string): void;
|
|
8879
8711
|
} & {
|
|
8880
|
-
/**
|
|
8881
|
-
* #volatile
|
|
8882
|
-
*/
|
|
8883
8712
|
sessionThemeName: string;
|
|
8884
|
-
/**
|
|
8885
|
-
* #volatile
|
|
8886
|
-
* this is the current "task" that is being performed in the UI.
|
|
8887
|
-
* this is usually an object of the form
|
|
8888
|
-
* `{ taskName: "configure", target: thing_being_configured }`
|
|
8889
|
-
*/
|
|
8890
8713
|
task: undefined;
|
|
8891
8714
|
} & {
|
|
8892
|
-
/**
|
|
8893
|
-
* #getter
|
|
8894
|
-
*/
|
|
8895
8715
|
readonly tracks: ({
|
|
8896
8716
|
[x: string]: any;
|
|
8897
8717
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
@@ -8903,16 +8723,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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|
|
8903
8723
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
8904
8724
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
8905
8725
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} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
8906
|
-
/**
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|
8907
|
-
* #getter
|
|
8908
|
-
*/
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8909
8726
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readonly root: any;
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|
8910
|
-
/**
|
|
8911
|
-
* #getter
|
|
8912
|
-
* list of sessionAssemblies and jbrowse config assemblies, does not
|
|
8913
|
-
* include temporaryAssemblies. basically the list to be displayed in a
|
|
8914
|
-
* AssemblySelector dropdown
|
|
8915
|
-
*/
|
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8916
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readonly assemblies: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
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8917
8728
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aliases: {
|
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8918
8729
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type: string;
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@@ -8937,10 +8748,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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8937
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description: string;
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8938
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};
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>[];
|
|
8940
|
-
/**
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|
8941
|
-
* #getter
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|
8942
|
-
* list of config connections and session connections
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|
8943
|
-
*/
|
|
8944
8751
|
readonly connections: ({
|
|
8945
8752
|
[x: string]: any;
|
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8946
8753
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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@@ -8964,33 +8771,12 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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8964
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};
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8965
8772
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}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>)[];
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8966
8773
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} & {
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8967
|
-
/**
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8968
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-
* #action
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|
8969
|
-
*/
|
|
8970
8774
|
setName(str: string): void;
|
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8971
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} & {
|
|
8972
|
-
/**
|
|
8973
|
-
* #getter
|
|
8974
|
-
* list of sessionAssemblies and jbrowse config assemblies, does not
|
|
8975
|
-
* include temporaryAssemblies. basically the list to be displayed in a
|
|
8976
|
-
* AssemblySelector dropdown
|
|
8977
|
-
*/
|
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8978
8776
|
readonly assemblyNames: string[];
|
|
8979
|
-
/**
|
|
8980
|
-
* #getter
|
|
8981
|
-
*/
|
|
8982
8777
|
readonly version: any;
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|
8983
|
-
/**
|
|
8984
|
-
* #getter
|
|
8985
|
-
*/
|
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8986
8778
|
readonly shareURL: any;
|
|
8987
|
-
/**
|
|
8988
|
-
* #getter
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|
8989
|
-
*/
|
|
8990
8779
|
readonly textSearchManager: TextSearchManager;
|
|
8991
|
-
/**
|
|
8992
|
-
* #getter
|
|
8993
|
-
*/
|
|
8994
8780
|
readonly assemblyManager: {
|
|
8995
8781
|
assemblies: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
|
|
8996
8782
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
@@ -9565,7 +9351,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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|
9565
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getRefNameMapForAdapter(adapterConf: {
|
|
9566
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|
[x: string]: unknown;
|
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9567
9353
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}, assemblyName: string | undefined, opts: {
|
|
9568
|
-
|
|
9354
|
+
stopToken?: string;
|
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sessionId: string;
|
|
9570
9356
|
}): Promise<{
|
|
9571
9357
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[x: string]: string;
|
|
@@ -9573,7 +9359,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
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9573
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|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
9574
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[x: string]: unknown;
|
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9575
9361
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}, assemblyName: string | undefined, opts: {
|
|
9576
|
-
|
|
9362
|
+
stopToken?: string;
|
|
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|
sessionId: string;
|
|
9578
9364
|
}): Promise<{
|
|
9579
9365
|
[x: string]: string;
|
|
@@ -10087,7 +9873,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
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10087
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getRefNameMapForAdapter(adapterConf: {
|
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10088
9874
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[x: string]: unknown;
|
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10089
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}, assemblyName: string | undefined, opts: {
|
|
10090
|
-
|
|
9876
|
+
stopToken?: string;
|
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|
sessionId: string;
|
|
10092
9878
|
}): Promise<{
|
|
10093
9879
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[x: string]: string;
|
|
@@ -10095,7 +9881,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
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10095
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getReverseRefNameMapForAdapter(adapterConf: {
|
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10096
9882
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[x: string]: unknown;
|
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10097
9883
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}, assemblyName: string | undefined, opts: {
|
|
10098
|
-
|
|
9884
|
+
stopToken?: string;
|
|
10099
9885
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sessionId: string;
|
|
10100
9886
|
}): Promise<{
|
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10101
9887
|
[x: string]: string;
|
|
@@ -10106,67 +9892,23 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
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|
|
10106
9892
|
removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
|
|
10107
9893
|
addAssembly(configuration: any): void;
|
|
10108
9894
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
10109
|
-
|
|
10110
|
-
* #getter
|
|
10111
|
-
*/
|
|
10112
|
-
readonly savedSessions: any;
|
|
10113
|
-
/**
|
|
10114
|
-
* #getter
|
|
10115
|
-
*/
|
|
9895
|
+
readonly savedSessionMetadata: any;
|
|
10116
9896
|
readonly previousAutosaveId: any;
|
|
10117
|
-
/**
|
|
10118
|
-
* #getter
|
|
10119
|
-
*/
|
|
10120
|
-
readonly savedSessionNames: any;
|
|
10121
|
-
/**
|
|
10122
|
-
* #getter
|
|
10123
|
-
*/
|
|
10124
9897
|
readonly history: any;
|
|
10125
|
-
/**
|
|
10126
|
-
* #getter
|
|
10127
|
-
*/
|
|
10128
|
-
readonly menus: any;
|
|
10129
|
-
/**
|
|
10130
|
-
* #method
|
|
10131
|
-
*/
|
|
10132
9898
|
renderProps(): {
|
|
10133
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|
theme: import("@mui/material").Theme;
|
|
10134
9900
|
highResolutionScaling: any;
|
|
10135
9901
|
};
|
|
10136
9902
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>): any;
|
|
10137
|
-
|
|
10138
|
-
|
|
10139
|
-
|
|
10140
|
-
removeSavedSession(sessionSnapshot: {
|
|
10141
|
-
name: string;
|
|
10142
|
-
}): any;
|
|
10143
|
-
/**
|
|
10144
|
-
* #action
|
|
10145
|
-
*/
|
|
9903
|
+
deleteSavedSession(id: string): any;
|
|
9904
|
+
favoriteSavedSession(id: string): any;
|
|
9905
|
+
unfavoriteSavedSession(id: string): any;
|
|
10146
9906
|
renameCurrentSession(sessionName: string): any;
|
|
10147
|
-
/**
|
|
10148
|
-
* #action
|
|
10149
|
-
*/
|
|
10150
9907
|
duplicateCurrentSession(): any;
|
|
10151
|
-
/**
|
|
10152
|
-
* #action
|
|
10153
|
-
*/
|
|
10154
9908
|
activateSession(sessionName: string): any;
|
|
10155
|
-
/**
|
|
10156
|
-
* #action
|
|
10157
|
-
*/
|
|
10158
9909
|
setDefaultSession(): any;
|
|
10159
|
-
/**
|
|
10160
|
-
* #action
|
|
10161
|
-
*/
|
|
10162
9910
|
saveSessionToLocalStorage(): any;
|
|
10163
|
-
/**
|
|
10164
|
-
* #action
|
|
10165
|
-
*/
|
|
10166
9911
|
loadAutosaveSession(): any;
|
|
10167
|
-
/**
|
|
10168
|
-
* #action
|
|
10169
|
-
*/
|
|
10170
9912
|
setSession(sessionSnapshot: SnapshotIn<{
|
|
10171
9913
|
drawerPosition: string;
|
|
10172
9914
|
drawerWidth: number;
|
|
@@ -10253,23 +9995,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
10253
9995
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
10254
9996
|
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
10255
9997
|
[x: string]: any;
|
|
10256
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import(
|
|
10257
|
-
/**
|
|
10258
|
-
* #stateModel BaseWebSession
|
|
10259
|
-
* used for "web based" products, including jbrowse-web and react-app
|
|
10260
|
-
* composed of
|
|
10261
|
-
* - [ReferenceManagementSessionMixin](../referencemanagementsessionmixin)
|
|
10262
|
-
* - [DrawerWidgetSessionMixin](../drawerwidgetsessionmixin)
|
|
10263
|
-
* - [DialogQueueSessionMixin](../dialogqueuesessionmixin)
|
|
10264
|
-
* - [ThemeManagerSessionMixin](../thememanagersessionmixin)
|
|
10265
|
-
* - [MultipleViewsSessionMixin](../multipleviewssessionmixin)
|
|
10266
|
-
* - [SessionTracksManagerSessionMixin](../sessiontracksmanagersessionmixin)
|
|
10267
|
-
* - [SessionAssembliesMixin](../sessionassembliesmixin)
|
|
10268
|
-
* - [TemporaryAssembliesMixin](../temporaryassembliesmixin)
|
|
10269
|
-
* - [WebSessionConnectionsMixin](../websessionconnectionsmixin)
|
|
10270
|
-
* - [AppFocusMixin](../appfocusmixin)
|
|
10271
|
-
*/
|
|
10272
|
-
"mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
9998
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
10273
9999
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
10274
10000
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | Record<string, unknown>): any;
|
|
10275
10001
|
addTrackConfs(trackConfs: (({
|
|
@@ -10952,7 +10678,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
10952
10678
|
getRefNameMapForAdapter(adapterConf: {
|
|
10953
10679
|
[x: string]: unknown;
|
|
10954
10680
|
}, assemblyName: string | undefined, opts: {
|
|
10955
|
-
|
|
10681
|
+
stopToken?: string;
|
|
10956
10682
|
sessionId: string;
|
|
10957
10683
|
}): Promise<{
|
|
10958
10684
|
[x: string]: string;
|
|
@@ -10960,7 +10686,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
10960
10686
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
10961
10687
|
[x: string]: unknown;
|
|
10962
10688
|
}, assemblyName: string | undefined, opts: {
|
|
10963
|
-
|
|
10689
|
+
stopToken?: string;
|
|
10964
10690
|
sessionId: string;
|
|
10965
10691
|
}): Promise<{
|
|
10966
10692
|
[x: string]: string;
|
|
@@ -11474,7 +11200,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
11474
11200
|
getRefNameMapForAdapter(adapterConf: {
|
|
11475
11201
|
[x: string]: unknown;
|
|
11476
11202
|
}, assemblyName: string | undefined, opts: {
|
|
11477
|
-
|
|
11203
|
+
stopToken?: string;
|
|
11478
11204
|
sessionId: string;
|
|
11479
11205
|
}): Promise<{
|
|
11480
11206
|
[x: string]: string;
|
|
@@ -11482,7 +11208,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
11482
11208
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
11483
11209
|
[x: string]: unknown;
|
|
11484
11210
|
}, assemblyName: string | undefined, opts: {
|
|
11485
|
-
|
|
11211
|
+
stopToken?: string;
|
|
11486
11212
|
sessionId: string;
|
|
11487
11213
|
}): Promise<{
|
|
11488
11214
|
[x: string]: string;
|
|
@@ -12013,7 +11739,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
12013
11739
|
getRefNameMapForAdapter(adapterConf: {
|
|
12014
11740
|
[x: string]: unknown;
|
|
12015
11741
|
}, assemblyName: string | undefined, opts: {
|
|
12016
|
-
|
|
11742
|
+
stopToken?: string;
|
|
12017
11743
|
sessionId: string;
|
|
12018
11744
|
}): Promise<{
|
|
12019
11745
|
[x: string]: string;
|
|
@@ -12021,7 +11747,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
12021
11747
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
12022
11748
|
[x: string]: unknown;
|
|
12023
11749
|
}, assemblyName: string | undefined, opts: {
|
|
12024
|
-
|
|
11750
|
+
stopToken?: string;
|
|
12025
11751
|
sessionId: string;
|
|
12026
11752
|
}): Promise<{
|
|
12027
11753
|
[x: string]: string;
|
|
@@ -12177,6 +11903,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
12177
11903
|
description: string;
|
|
12178
11904
|
};
|
|
12179
11905
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>>) | undefined;
|
|
11906
|
+
addAssembly(conf: AnyConfiguration): void;
|
|
11907
|
+
removeAssembly(name: string): void;
|
|
12180
11908
|
removeSessionAssembly(assemblyName: string): void;
|
|
12181
11909
|
} & {
|
|
12182
11910
|
addTemporaryAssembly(conf: AnyConfiguration): any;
|
|
@@ -12323,21 +12051,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
12323
12051
|
popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
|
|
12324
12052
|
removeSnackbarMessage(message: string): void;
|
|
12325
12053
|
} & {
|
|
12326
|
-
/**
|
|
12327
|
-
* #volatile
|
|
12328
|
-
*/
|
|
12329
12054
|
sessionThemeName: string;
|
|
12330
|
-
/**
|
|
12331
|
-
* #volatile
|
|
12332
|
-
* this is the current "task" that is being performed in the UI.
|
|
12333
|
-
* this is usually an object of the form
|
|
12334
|
-
* `{ taskName: "configure", target: thing_being_configured }`
|
|
12335
|
-
*/
|
|
12336
12055
|
task: undefined;
|
|
12337
12056
|
} & {
|
|
12338
|
-
/**
|
|
12339
|
-
* #getter
|
|
12340
|
-
*/
|
|
12341
12057
|
readonly tracks: ({
|
|
12342
12058
|
[x: string]: any;
|
|
12343
12059
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
@@ -12349,16 +12065,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
12349
12065
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
12350
12066
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
12351
12067
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
12352
|
-
/**
|
|
12353
|
-
* #getter
|
|
12354
|
-
*/
|
|
12355
12068
|
readonly root: any;
|
|
12356
|
-
/**
|
|
12357
|
-
* #getter
|
|
12358
|
-
* list of sessionAssemblies and jbrowse config assemblies, does not
|
|
12359
|
-
* include temporaryAssemblies. basically the list to be displayed in a
|
|
12360
|
-
* AssemblySelector dropdown
|
|
12361
|
-
*/
|
|
12362
12069
|
readonly assemblies: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
12363
12070
|
aliases: {
|
|
12364
12071
|
type: string;
|
|
@@ -12383,10 +12090,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
12383
12090
|
description: string;
|
|
12384
12091
|
};
|
|
12385
12092
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>[];
|
|
12386
|
-
/**
|
|
12387
|
-
* #getter
|
|
12388
|
-
* list of config connections and session connections
|
|
12389
|
-
*/
|
|
12390
12093
|
readonly connections: ({
|
|
12391
12094
|
[x: string]: any;
|
|
12392
12095
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
@@ -12410,33 +12113,12 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
12410
12113
|
};
|
|
12411
12114
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>)[];
|
|
12412
12115
|
} & {
|
|
12413
|
-
/**
|
|
12414
|
-
* #action
|
|
12415
|
-
*/
|
|
12416
12116
|
setName(str: string): void;
|
|
12417
12117
|
} & {
|
|
12418
|
-
/**
|
|
12419
|
-
* #getter
|
|
12420
|
-
* list of sessionAssemblies and jbrowse config assemblies, does not
|
|
12421
|
-
* include temporaryAssemblies. basically the list to be displayed in a
|
|
12422
|
-
* AssemblySelector dropdown
|
|
12423
|
-
*/
|
|
12424
12118
|
readonly assemblyNames: string[];
|
|
12425
|
-
/**
|
|
12426
|
-
* #getter
|
|
12427
|
-
*/
|
|
12428
12119
|
readonly version: any;
|
|
12429
|
-
/**
|
|
12430
|
-
* #getter
|
|
12431
|
-
*/
|
|
12432
12120
|
readonly shareURL: any;
|
|
12433
|
-
/**
|
|
12434
|
-
* #getter
|
|
12435
|
-
*/
|
|
12436
12121
|
readonly textSearchManager: TextSearchManager;
|
|
12437
|
-
/**
|
|
12438
|
-
* #getter
|
|
12439
|
-
*/
|
|
12440
12122
|
readonly assemblyManager: {
|
|
12441
12123
|
assemblies: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
|
|
12442
12124
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
@@ -13011,7 +12693,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
13011
12693
|
getRefNameMapForAdapter(adapterConf: {
|
|
13012
12694
|
[x: string]: unknown;
|
|
13013
12695
|
}, assemblyName: string | undefined, opts: {
|
|
13014
|
-
|
|
12696
|
+
stopToken?: string;
|
|
13015
12697
|
sessionId: string;
|
|
13016
12698
|
}): Promise<{
|
|
13017
12699
|
[x: string]: string;
|
|
@@ -13019,7 +12701,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
13019
12701
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
13020
12702
|
[x: string]: unknown;
|
|
13021
12703
|
}, assemblyName: string | undefined, opts: {
|
|
13022
|
-
|
|
12704
|
+
stopToken?: string;
|
|
13023
12705
|
sessionId: string;
|
|
13024
12706
|
}): Promise<{
|
|
13025
12707
|
[x: string]: string;
|
|
@@ -13533,7 +13215,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
13533
13215
|
getRefNameMapForAdapter(adapterConf: {
|
|
13534
13216
|
[x: string]: unknown;
|
|
13535
13217
|
}, assemblyName: string | undefined, opts: {
|
|
13536
|
-
|
|
13218
|
+
stopToken?: string;
|
|
13537
13219
|
sessionId: string;
|
|
13538
13220
|
}): Promise<{
|
|
13539
13221
|
[x: string]: string;
|
|
@@ -13541,7 +13223,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
13541
13223
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
13542
13224
|
[x: string]: unknown;
|
|
13543
13225
|
}, assemblyName: string | undefined, opts: {
|
|
13544
|
-
|
|
13226
|
+
stopToken?: string;
|
|
13545
13227
|
sessionId: string;
|
|
13546
13228
|
}): Promise<{
|
|
13547
13229
|
[x: string]: string;
|
|
@@ -13552,29 +13234,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
13552
13234
|
removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
|
|
13553
13235
|
addAssembly(configuration: any): void;
|
|
13554
13236
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
13555
|
-
|
|
13556
|
-
* #getter
|
|
13557
|
-
*/
|
|
13558
|
-
readonly savedSessions: any;
|
|
13559
|
-
/**
|
|
13560
|
-
* #getter
|
|
13561
|
-
*/
|
|
13237
|
+
readonly savedSessionMetadata: any;
|
|
13562
13238
|
readonly previousAutosaveId: any;
|
|
13563
|
-
/**
|
|
13564
|
-
* #getter
|
|
13565
|
-
*/
|
|
13566
|
-
readonly savedSessionNames: any;
|
|
13567
|
-
/**
|
|
13568
|
-
* #getter
|
|
13569
|
-
*/
|
|
13570
13239
|
readonly history: any;
|
|
13571
|
-
/**
|
|
13572
|
-
* #getter
|
|
13573
|
-
*/
|
|
13574
|
-
readonly menus: any;
|
|
13575
|
-
/**
|
|
13576
|
-
* #method
|
|
13577
|
-
*/
|
|
13578
13240
|
renderProps(): {
|
|
13579
13241
|
theme: import("@mui/material").Theme;
|
|
13580
13242
|
highResolutionScaling: any;
|
|
@@ -14292,7 +13954,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
14292
13954
|
getRefNameMapForAdapter(adapterConf: {
|
|
14293
13955
|
[x: string]: unknown;
|
|
14294
13956
|
}, assemblyName: string | undefined, opts: {
|
|
14295
|
-
|
|
13957
|
+
stopToken?: string;
|
|
14296
13958
|
sessionId: string;
|
|
14297
13959
|
}): Promise<{
|
|
14298
13960
|
[x: string]: string;
|
|
@@ -14300,7 +13962,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
14300
13962
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
14301
13963
|
[x: string]: unknown;
|
|
14302
13964
|
}, assemblyName: string | undefined, opts: {
|
|
14303
|
-
|
|
13965
|
+
stopToken?: string;
|
|
14304
13966
|
sessionId: string;
|
|
14305
13967
|
}): Promise<{
|
|
14306
13968
|
[x: string]: string;
|
|
@@ -14814,7 +14476,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
14814
14476
|
getRefNameMapForAdapter(adapterConf: {
|
|
14815
14477
|
[x: string]: unknown;
|
|
14816
14478
|
}, assemblyName: string | undefined, opts: {
|
|
14817
|
-
|
|
14479
|
+
stopToken?: string;
|
|
14818
14480
|
sessionId: string;
|
|
14819
14481
|
}): Promise<{
|
|
14820
14482
|
[x: string]: string;
|
|
@@ -14822,7 +14484,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
14822
14484
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
14823
14485
|
[x: string]: unknown;
|
|
14824
14486
|
}, assemblyName: string | undefined, opts: {
|
|
14825
|
-
|
|
14487
|
+
stopToken?: string;
|
|
14826
14488
|
sessionId: string;
|
|
14827
14489
|
}): Promise<{
|
|
14828
14490
|
[x: string]: string;
|
|
@@ -15353,7 +15015,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
15353
15015
|
getRefNameMapForAdapter(adapterConf: {
|
|
15354
15016
|
[x: string]: unknown;
|
|
15355
15017
|
}, assemblyName: string | undefined, opts: {
|
|
15356
|
-
|
|
15018
|
+
stopToken?: string;
|
|
15357
15019
|
sessionId: string;
|
|
15358
15020
|
}): Promise<{
|
|
15359
15021
|
[x: string]: string;
|
|
@@ -15361,7 +15023,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
15361
15023
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
15362
15024
|
[x: string]: unknown;
|
|
15363
15025
|
}, assemblyName: string | undefined, opts: {
|
|
15364
|
-
|
|
15026
|
+
stopToken?: string;
|
|
15365
15027
|
sessionId: string;
|
|
15366
15028
|
}): Promise<{
|
|
15367
15029
|
[x: string]: string;
|
|
@@ -15517,6 +15179,8 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
15517
15179
|
description: string;
|
|
15518
15180
|
};
|
|
15519
15181
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>>) | undefined;
|
|
15182
|
+
addAssembly(conf: AnyConfiguration): void;
|
|
15183
|
+
removeAssembly(name: string): void;
|
|
15520
15184
|
removeSessionAssembly(assemblyName: string): void;
|
|
15521
15185
|
} & {
|
|
15522
15186
|
addTemporaryAssembly(conf: AnyConfiguration): any;
|
|
@@ -15663,21 +15327,9 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
15663
15327
|
popSnackbarMessage(): import("@jbrowse/core/ui/SnackbarModel").SnackbarMessage | undefined;
|
|
15664
15328
|
removeSnackbarMessage(message: string): void;
|
|
15665
15329
|
} & {
|
|
15666
|
-
/**
|
|
15667
|
-
* #volatile
|
|
15668
|
-
*/
|
|
15669
15330
|
sessionThemeName: string;
|
|
15670
|
-
/**
|
|
15671
|
-
* #volatile
|
|
15672
|
-
* this is the current "task" that is being performed in the UI.
|
|
15673
|
-
* this is usually an object of the form
|
|
15674
|
-
* `{ taskName: "configure", target: thing_being_configured }`
|
|
15675
|
-
*/
|
|
15676
15331
|
task: undefined;
|
|
15677
15332
|
} & {
|
|
15678
|
-
/**
|
|
15679
|
-
* #getter
|
|
15680
|
-
*/
|
|
15681
15333
|
readonly tracks: ({
|
|
15682
15334
|
[x: string]: any;
|
|
15683
15335
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
@@ -15689,16 +15341,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
15689
15341
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
15690
15342
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
15691
15343
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
15692
|
-
/**
|
|
15693
|
-
* #getter
|
|
15694
|
-
*/
|
|
15695
15344
|
readonly root: any;
|
|
15696
|
-
/**
|
|
15697
|
-
* #getter
|
|
15698
|
-
* list of sessionAssemblies and jbrowse config assemblies, does not
|
|
15699
|
-
* include temporaryAssemblies. basically the list to be displayed in a
|
|
15700
|
-
* AssemblySelector dropdown
|
|
15701
|
-
*/
|
|
15702
15345
|
readonly assemblies: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
15703
15346
|
aliases: {
|
|
15704
15347
|
type: string;
|
|
@@ -15723,10 +15366,6 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
15723
15366
|
description: string;
|
|
15724
15367
|
};
|
|
15725
15368
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>[];
|
|
15726
|
-
/**
|
|
15727
|
-
* #getter
|
|
15728
|
-
* list of config connections and session connections
|
|
15729
|
-
*/
|
|
15730
15369
|
readonly connections: ({
|
|
15731
15370
|
[x: string]: any;
|
|
15732
15371
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
@@ -15750,33 +15389,12 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
15750
15389
|
};
|
|
15751
15390
|
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>)[];
|
|
15752
15391
|
} & {
|
|
15753
|
-
/**
|
|
15754
|
-
* #action
|
|
15755
|
-
*/
|
|
15756
15392
|
setName(str: string): void;
|
|
15757
15393
|
} & {
|
|
15758
|
-
/**
|
|
15759
|
-
* #getter
|
|
15760
|
-
* list of sessionAssemblies and jbrowse config assemblies, does not
|
|
15761
|
-
* include temporaryAssemblies. basically the list to be displayed in a
|
|
15762
|
-
* AssemblySelector dropdown
|
|
15763
|
-
*/
|
|
15764
15394
|
readonly assemblyNames: string[];
|
|
15765
|
-
/**
|
|
15766
|
-
* #getter
|
|
15767
|
-
*/
|
|
15768
15395
|
readonly version: any;
|
|
15769
|
-
/**
|
|
15770
|
-
* #getter
|
|
15771
|
-
*/
|
|
15772
15396
|
readonly shareURL: any;
|
|
15773
|
-
/**
|
|
15774
|
-
* #getter
|
|
15775
|
-
*/
|
|
15776
15397
|
readonly textSearchManager: TextSearchManager;
|
|
15777
|
-
/**
|
|
15778
|
-
* #getter
|
|
15779
|
-
*/
|
|
15780
15398
|
readonly assemblyManager: {
|
|
15781
15399
|
assemblies: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
|
|
15782
15400
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
@@ -16351,7 +15969,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
16351
15969
|
getRefNameMapForAdapter(adapterConf: {
|
|
16352
15970
|
[x: string]: unknown;
|
|
16353
15971
|
}, assemblyName: string | undefined, opts: {
|
|
16354
|
-
|
|
15972
|
+
stopToken?: string;
|
|
16355
15973
|
sessionId: string;
|
|
16356
15974
|
}): Promise<{
|
|
16357
15975
|
[x: string]: string;
|
|
@@ -16359,7 +15977,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
16359
15977
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
16360
15978
|
[x: string]: unknown;
|
|
16361
15979
|
}, assemblyName: string | undefined, opts: {
|
|
16362
|
-
|
|
15980
|
+
stopToken?: string;
|
|
16363
15981
|
sessionId: string;
|
|
16364
15982
|
}): Promise<{
|
|
16365
15983
|
[x: string]: string;
|
|
@@ -16873,7 +16491,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
16873
16491
|
getRefNameMapForAdapter(adapterConf: {
|
|
16874
16492
|
[x: string]: unknown;
|
|
16875
16493
|
}, assemblyName: string | undefined, opts: {
|
|
16876
|
-
|
|
16494
|
+
stopToken?: string;
|
|
16877
16495
|
sessionId: string;
|
|
16878
16496
|
}): Promise<{
|
|
16879
16497
|
[x: string]: string;
|
|
@@ -16881,7 +16499,7 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
16881
16499
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
16882
16500
|
[x: string]: unknown;
|
|
16883
16501
|
}, assemblyName: string | undefined, opts: {
|
|
16884
|
-
|
|
16502
|
+
stopToken?: string;
|
|
16885
16503
|
sessionId: string;
|
|
16886
16504
|
}): Promise<{
|
|
16887
16505
|
[x: string]: string;
|
|
@@ -16892,43 +16510,17 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
16892
16510
|
removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
|
|
16893
16511
|
addAssembly(configuration: any): void;
|
|
16894
16512
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
16895
|
-
|
|
16896
|
-
* #getter
|
|
16897
|
-
*/
|
|
16898
|
-
readonly savedSessions: any;
|
|
16899
|
-
/**
|
|
16900
|
-
* #getter
|
|
16901
|
-
*/
|
|
16513
|
+
readonly savedSessionMetadata: any;
|
|
16902
16514
|
readonly previousAutosaveId: any;
|
|
16903
|
-
/**
|
|
16904
|
-
* #getter
|
|
16905
|
-
*/
|
|
16906
|
-
readonly savedSessionNames: any;
|
|
16907
|
-
/**
|
|
16908
|
-
* #getter
|
|
16909
|
-
*/
|
|
16910
16515
|
readonly history: any;
|
|
16911
|
-
/**
|
|
16912
|
-
* #getter
|
|
16913
|
-
*/
|
|
16914
|
-
readonly menus: any;
|
|
16915
|
-
/**
|
|
16916
|
-
* #method
|
|
16917
|
-
*/
|
|
16918
16516
|
renderProps(): {
|
|
16919
16517
|
theme: import("@mui/material").Theme;
|
|
16920
16518
|
highResolutionScaling: any;
|
|
16921
16519
|
};
|
|
16922
16520
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>): any;
|
|
16923
16521
|
} & {
|
|
16924
|
-
/**
|
|
16925
|
-
* #action
|
|
16926
|
-
*/
|
|
16927
16522
|
editTrackConfiguration(configuration: AnyConfigurationModel): void;
|
|
16928
16523
|
} & {
|
|
16929
|
-
/**
|
|
16930
|
-
* #method
|
|
16931
|
-
*/
|
|
16932
16524
|
getTrackActionMenuItems(config: BaseTrackConfig): ({
|
|
16933
16525
|
label: string;
|
|
16934
16526
|
priority: number;
|
|
@@ -16941,11 +16533,12 @@ export declare function BaseWebSession({ pluginManager, assemblyConfigSchema, }:
|
|
|
16941
16533
|
label: string;
|
|
16942
16534
|
priority: number;
|
|
16943
16535
|
disabled: boolean;
|
|
16944
|
-
onClick: () => void;
|
|
16945
16536
|
icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
|
|
16946
16537
|
muiName: string;
|
|
16947
16538
|
};
|
|
16539
|
+
onClick: () => void;
|
|
16948
16540
|
})[];
|
|
16541
|
+
menus(): Menu[];
|
|
16949
16542
|
} & {
|
|
16950
16543
|
afterAttach(): void;
|
|
16951
16544
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|