@jbrowse/web-core 2.13.1 → 2.15.0

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Files changed (7) hide show
  1. package/dist/BaseWebSession/index.d.ts +3351 -2235
  2. package/dist/BaseWebSession/index.js +16 -14
  3. package/dist/SessionConnections.d.ts +72 -12
  4. package/esm/BaseWebSession/index.d.ts +3351 -2235
  5. package/esm/BaseWebSession/index.js +16 -14
  6. package/esm/SessionConnections.d.ts +72 -12
  7. package/package.json +7 -7
package/esm/BaseWebSession/index.js CHANGED
@@ -1,4 +1,3 @@
1
- /* eslint-disable @typescript-eslint/no-explicit-any */
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1
  import { lazy } from 'react';
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  import clone from 'clone';
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  import { getConf, readConfObject, } from '@jbrowse/core/configuration';
@@ -191,9 +190,14 @@ export function BaseWebSession({ pluginManager, assemblyConfigSchema, }) {
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  * #action
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  */
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  removeSessionPlugin(pluginDefinition) {
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- self.sessionPlugins = cast(self.sessionPlugins.filter(plugin => plugin.url !== pluginDefinition.url ||
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+ self.sessionPlugins = cast(self.sessionPlugins.filter(plugin =>
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+ // @ts-expect-error
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+ plugin.url !== pluginDefinition.url ||
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+ // @ts-expect-error
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  plugin.umdUrl !== pluginDefinition.umdUrl ||
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+ // @ts-expect-error
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  plugin.cjsUrl !== pluginDefinition.cjsUrl ||
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+ // @ts-expect-error
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  plugin.esmUrl !== pluginDefinition.esmUrl));
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  getParent(self).setPluginsUpdated(true);
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  },
@@ -287,7 +291,9 @@ export function BaseWebSession({ pluginManager, assemblyConfigSchema, }) {
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  {
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  label: 'Settings',
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  disabled: !canEdit,
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- onClick: () => self.editTrackConfiguration(config),
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+ onClick: () => {
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+ self.editTrackConfiguration(config);
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+ },
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  icon: SettingsIcon,
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  },
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  {
@@ -333,17 +339,13 @@ export function BaseWebSession({ pluginManager, assemblyConfigSchema, }) {
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  return types.snapshotProcessor(extendedSessionModel, {
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  // @ts-expect-error
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  preProcessor(snapshot) {
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- if (snapshot) {
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- // @ts-expect-error
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- const { connectionInstances, ...rest } = snapshot || {};
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- // connectionInstances schema changed from object to an array, so any
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- // old connectionInstances as object is in snapshot, filter it out
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- // https://github.com/GMOD/jbrowse-components/issues/1903
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- if (!Array.isArray(connectionInstances)) {
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- return rest;
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- }
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- }
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- return snapshot;
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+ // @ts-expect-error
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+ // eslint-disable-next-line @typescript-eslint/no-unnecessary-condition
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+ const { connectionInstances, ...rest } = snapshot || {};
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+ // connectionInstances schema changed from object to an array, so any
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+ // old connectionInstances as object is in snapshot, filter it out
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+ // https://github.com/GMOD/jbrowse-components/issues/1903
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+ return !Array.isArray(connectionInstances) ? rest : snapshot;
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  },
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  });
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  }
package/esm/SessionConnections.d.ts CHANGED
@@ -25,9 +25,29 @@ export declare function WebSessionConnectionsMixin(pluginManager: PluginManager)
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  connect(_arg: AnyConfigurationModel): void;
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  } & {
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  afterAttach(): void;
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- addTrackConf(trackConf: AnyConfigurationModel): any;
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- addTrackConfs(trackConfs: AnyConfigurationModel[]): any[];
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- setTrackConfs(trackConfs: AnyConfigurationModel[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
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+ addTrackConf(trackConf: ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | Record<string, unknown>): any;
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+ addTrackConfs(trackConfs: (({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | Record<string, unknown>)[]): void;
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+ setTrackConfs(trackConfs: AnyConfigurationModel[]): void;
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  clear(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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  } & {
@@ -59,7 +79,7 @@ export declare function WebSessionConnectionsMixin(pluginManager: PluginManager)
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  };
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  }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>)[];
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  } & {
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- makeConnection(configuration: AnyConfigurationModel, initialSnapshot?: {}): {
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+ makeConnection(configuration: AnyConfigurationModel, initialSnapshot?: {}): ({
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  name: string;
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  tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
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  configuration: {
@@ -88,9 +108,29 @@ export declare function WebSessionConnectionsMixin(pluginManager: PluginManager)
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  connect(_arg: AnyConfigurationModel): void;
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  } & {
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  afterAttach(): void;
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- addTrackConf(trackConf: AnyConfigurationModel): any;
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- addTrackConfs(trackConfs: AnyConfigurationModel[]): any[];
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- setTrackConfs(trackConfs: AnyConfigurationModel[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
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+ addTrackConf(trackConf: ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | Record<string, unknown>): any;
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+ addTrackConfs(trackConfs: (({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | Record<string, unknown>)[]): void;
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+ setTrackConfs(trackConfs: AnyConfigurationModel[]): void;
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  clear(): void;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  name: import("mobx-state-tree").ISimpleType<string>;
@@ -111,11 +151,31 @@ export declare function WebSessionConnectionsMixin(pluginManager: PluginManager)
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  connect(_arg: AnyConfigurationModel): void;
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  } & {
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  afterAttach(): void;
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- addTrackConf(trackConf: AnyConfigurationModel): any;
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- addTrackConfs(trackConfs: AnyConfigurationModel[]): any[];
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- setTrackConfs(trackConfs: AnyConfigurationModel[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
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+ addTrackConf(trackConf: ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | Record<string, unknown>): any;
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+ addTrackConfs(trackConfs: (({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | Record<string, unknown>)[]): void;
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+ setTrackConfs(trackConfs: AnyConfigurationModel[]): void;
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  clear(): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
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  prepareToBreakConnection(configuration: AnyConfigurationModel): (Record<string, number> | (() => void))[] | undefined;
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  breakConnection(configuration: AnyConfigurationModel): void;
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  deleteConnection(configuration: AnyConfigurationModel): any;
@@ -123,5 +183,5 @@ export declare function WebSessionConnectionsMixin(pluginManager: PluginManager)
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  clearConnections(): void;
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  } & {
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  addConnectionConf(connectionConf: BaseConnectionConfigModel): any;
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- deleteConnection(configuration: AnyConfigurationModel): any;
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+ deleteConnection(configuration: AnyConfigurationModel): {} | undefined;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
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  "name": "@jbrowse/web-core",
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- "version": "2.13.1",
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+ "version": "2.15.0",
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  "description": "JBrowse 2 code shared between web-app type products",
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  "keywords": [
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  "jbrowse",
@@ -32,7 +32,7 @@
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  "build:esm": "tsc --build tsconfig.build.esm.json",
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  "build:commonjs": "tsc --build tsconfig.build.commonjs.json",
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  "build": "npm run build:esm && npm run build:commonjs",
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- "test": "cd ../..; jest packages/web-core",
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+ "test": "cd ../..; jest --passWithNoTests packages/web-core",
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  "clean": "rimraf dist esm *.tsbuildinfo",
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  "prebuild": "yarn clean",
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  "prepack": "yarn build && yarn useDist",
@@ -42,10 +42,10 @@
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  },
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  "dependencies": {
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  "@babel/runtime": "^7.16.3",
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- "@jbrowse/app-core": "^2.13.1",
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- "@jbrowse/product-core": "^2.13.1",
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- "@mui/icons-material": "^5.0.0",
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- "@mui/material": "^5.10.17",
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+ "@jbrowse/app-core": "^2.15.0",
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+ "@jbrowse/product-core": "^2.15.0",
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+ "@mui/icons-material": "^6.0.0",
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+ "@mui/material": "^6.0.0",
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  "clone": "^2.0.0",
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  "copy-to-clipboard": "^3.3.1",
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  "react-error-boundary": "^4.0.3"
@@ -62,5 +62,5 @@
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  "publishConfig": {
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  "access": "public"
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  },
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- "gitHead": "fcebca71cc1d066654603e1a9accfa6c6d4f764d"
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+ "gitHead": "87eeb1fbf8311dbf88d5e75b5a265f03beffdda8"
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  }