@jbrowse/text-indexing 4.1.15 → 4.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/TextIndexing.js +3 -3
- package/esm/util.js +3 -3
- package/package.json +3 -4
package/esm/TextIndexing.js
CHANGED
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@@ -65,7 +65,7 @@ async function aggregateIndex({ tracks, statusCallback, outDir: paramOutDir, att
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65
65
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fs.mkdirSync(trixDir);
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66
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}
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if (!assemblyNames) {
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68
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-
throw new Error('No assemblies passed.
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68
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+
throw new Error('No assemblies passed. Assemblies required for aggregate indexes');
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}
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for (const asm of assemblyNames) {
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const id = `${asm}-index`;
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@@ -96,7 +96,7 @@ async function indexDriver({ tracks, outDir, attributesToIndex, name, featureTyp
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statusCallback('Indexing files.');
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await runIxIxx(readable, outDir, name);
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checkStopToken(stopToken);
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99
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-
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99
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+
generateMeta({
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configs: tracks,
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attributesToIndex,
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outDir,
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@@ -127,7 +127,7 @@ async function* indexFiles({ tracks, attributesToIndex: idx1, outDir, featureTyp
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},
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});
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}
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130
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-
if (type === 'Gff3TabixAdapter') {
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130
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+
else if (type === 'Gff3TabixAdapter') {
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yield* indexGff3({
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config: track,
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attributesToIndex,
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package/esm/util.js
CHANGED
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@@ -1,9 +1,9 @@
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1
1
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import path from 'path';
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2
2
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import { isSupportedIndexingAdapter } from '@jbrowse/core/util';
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3
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-
import
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3
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+
import { sanitizeForFilename } from '@jbrowse/text-indexing-core';
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4
4
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export function createTextSearchConf(name, trackIds, assemblyNames, locationPath) {
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const base = path.join(locationPath, 'trix');
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6
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-
const n =
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6
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+
const n = sanitizeForFilename(name);
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return {
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type: 'TrixTextSearchAdapter',
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textSearchAdapterId: name,
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@@ -16,7 +16,7 @@ export function createTextSearchConf(name, trackIds, assemblyNames, locationPath
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locationType: 'LocalPathLocation',
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},
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metaFilePath: {
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-
localPath: path.join(base, `${n}.json`),
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+
localPath: path.join(base, `${n}_meta.json`),
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locationType: 'LocalPathLocation',
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},
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tracks: trackIds,
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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1
1
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{
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"name": "@jbrowse/text-indexing",
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3
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-
"version": "4.1
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3
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+
"version": "4.2.1",
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"type": "module",
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"description": "JBrowse 2 text indexing for desktop",
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"keywords": [
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@@ -25,9 +25,8 @@
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],
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"dependencies": {
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"ixixx": "^3.0.3",
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-
"
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-
"@jbrowse/
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-
"@jbrowse/core": "^4.1.15"
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+
"@jbrowse/text-indexing-core": "^4.2.1",
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+
"@jbrowse/core": "^4.2.1"
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},
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"peerDependencies": {
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"react": ">=18.0.0",
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