@jbrowse/text-indexing 2.15.3 → 2.15.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/TextIndexing.js +32 -3
- package/esm/TextIndexing.js +32 -3
- package/package.json +3 -3
package/dist/TextIndexing.js
CHANGED
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@@ -120,7 +120,22 @@ async function* indexFiles({ tracks, attributesToIndex: idx1, outDir, featureTyp
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120
120
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const { type } = adapter || {};
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121
121
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const { indexingFeatureTypesToExclude: featureTypesToExclude = edx1, indexingAttributes: attributesToIndex = idx1, } = textSearching || {};
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122
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let myTotalBytes;
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123
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-
if (type === '
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123
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+
if (type === 'Gff3Adapter') {
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124
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yield* (0, gff3Adapter_1.indexGff3)({
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125
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config: track,
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126
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+
attributesToIndex,
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127
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inLocation: getLoc('gffLocation', track),
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128
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outDir,
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129
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featureTypesToExclude,
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130
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onStart: totalBytes => {
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131
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myTotalBytes = totalBytes;
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132
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},
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133
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onUpdate: progressBytes => {
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134
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statusCallback(`${progressBytes}/${myTotalBytes}`);
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135
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},
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136
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});
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137
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}
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138
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if (type === 'Gff3TabixAdapter') {
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124
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yield* (0, gff3Adapter_1.indexGff3)({
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config: track,
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attributesToIndex,
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@@ -135,7 +150,21 @@ async function* indexFiles({ tracks, attributesToIndex: idx1, outDir, featureTyp
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},
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});
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}
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138
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-
else if (type === '
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153
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else if (type === 'VcfAdapter') {
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154
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yield* (0, vcfAdapter_1.indexVcf)({
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155
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config: track,
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156
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attributesToIndex,
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157
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inLocation: getLoc('vcfLocation', track),
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158
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outDir,
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159
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onStart: totalBytes => {
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160
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myTotalBytes = totalBytes;
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161
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},
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162
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onUpdate: progressBytes => {
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163
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statusCallback(`${progressBytes}/${myTotalBytes}`);
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164
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},
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165
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});
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166
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}
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167
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else if (type === 'VcfTabixAdapter') {
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139
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yield* (0, vcfAdapter_1.indexVcf)({
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140
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config: track,
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141
170
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attributesToIndex,
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@@ -156,7 +185,7 @@ function getLoc(attr, config) {
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185
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var _a;
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const elt = (_a = config.adapter) === null || _a === void 0 ? void 0 : _a[attr];
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if (!elt) {
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159
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-
throw new Error('
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188
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throw new Error(`can't get find ${attr} from ${config.adapter} for text indexing`);
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}
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return elt.uri || elt.localPath;
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}
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package/esm/TextIndexing.js
CHANGED
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@@ -114,7 +114,22 @@ async function* indexFiles({ tracks, attributesToIndex: idx1, outDir, featureTyp
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const { type } = adapter || {};
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const { indexingFeatureTypesToExclude: featureTypesToExclude = edx1, indexingAttributes: attributesToIndex = idx1, } = textSearching || {};
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let myTotalBytes;
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117
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-
if (type === '
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117
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if (type === 'Gff3Adapter') {
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118
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yield* indexGff3({
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119
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config: track,
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120
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+
attributesToIndex,
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121
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inLocation: getLoc('gffLocation', track),
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122
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outDir,
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123
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+
featureTypesToExclude,
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124
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onStart: totalBytes => {
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125
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myTotalBytes = totalBytes;
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126
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},
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127
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onUpdate: progressBytes => {
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128
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statusCallback(`${progressBytes}/${myTotalBytes}`);
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129
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},
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});
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131
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}
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132
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if (type === 'Gff3TabixAdapter') {
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yield* indexGff3({
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config: track,
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attributesToIndex,
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@@ -129,7 +144,21 @@ async function* indexFiles({ tracks, attributesToIndex: idx1, outDir, featureTyp
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},
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});
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}
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132
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-
else if (type === '
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147
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else if (type === 'VcfAdapter') {
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148
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yield* indexVcf({
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config: track,
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150
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attributesToIndex,
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151
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inLocation: getLoc('vcfLocation', track),
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152
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outDir,
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153
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onStart: totalBytes => {
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154
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myTotalBytes = totalBytes;
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155
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},
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156
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onUpdate: progressBytes => {
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157
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statusCallback(`${progressBytes}/${myTotalBytes}`);
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158
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},
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159
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});
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160
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}
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161
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else if (type === 'VcfTabixAdapter') {
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133
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yield* indexVcf({
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config: track,
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135
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attributesToIndex,
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@@ -150,7 +179,7 @@ function getLoc(attr, config) {
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179
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var _a;
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const elt = (_a = config.adapter) === null || _a === void 0 ? void 0 : _a[attr];
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if (!elt) {
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153
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-
throw new Error('
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182
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throw new Error(`can't get find ${attr} from ${config.adapter} for text indexing`);
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}
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return elt.uri || elt.localPath;
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}
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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1
1
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{
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2
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"name": "@jbrowse/text-indexing",
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"version": "2.15.
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3
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"version": "2.15.4",
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4
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"description": "JBrowse 2 text indexing for desktop",
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"keywords": [
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6
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"jbrowse",
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@@ -42,7 +42,7 @@
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},
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"dependencies": {
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"@babel/runtime": "^7.16.3",
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"@jbrowse/core": "^2.15.
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"@jbrowse/core": "^2.15.4",
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"ixixx": "^2.0.1",
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"node-fetch": "^2.6.0",
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"sanitize-filename": "^1.6.3"
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@@ -58,5 +58,5 @@
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"publishConfig": {
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"access": "public"
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},
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"gitHead": "
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"gitHead": "686b4ad9016b3586e8230180f7adb44c238ba4fb"
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}
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