@jbrowse/text-indexing 2.12.0 → 2.12.2

package/dist/TextIndexing.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.indexTracks = void 0;
+exports.indexTracks = indexTracks;
 const fs_1 = __importDefault(require("fs"));
 const path_1 = __importDefault(require("path"));
 const stream_1 = require("stream");
@@ -22,7 +22,6 @@ async function indexTracks(args) {
     (0, util_1.checkAbortSignal)(signal);
     return [];
 }
-exports.indexTracks = indexTracks;
 async function perTrackIndex(tracks, statusCallback, outLocation, attributes, exclude, signal) {
     const outFlag = outLocation || '.';
     const isDir = fs_1.default.lstatSync(outFlag).isDirectory();

package/dist/types/common.d.ts

@@ -1,5 +1,3 @@
-/// <reference types="node" />
-/// <reference types="node" />
 import fs from 'fs';
 import fetch from 'node-fetch';
 import { LocalPathLocation, UriLocation, Track } from '../util';

package/dist/types/common.js

@@ -3,7 +3,12 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.generateMeta = exports.guessAdapterFromFileName = exports.makeLocation = exports.getLocalOrRemoteStream = exports.isURL = exports.createRemoteStream = void 0;
+exports.createRemoteStream = createRemoteStream;
+exports.isURL = isURL;
+exports.getLocalOrRemoteStream = getLocalOrRemoteStream;
+exports.makeLocation = makeLocation;
+exports.guessAdapterFromFileName = guessAdapterFromFileName;
+exports.generateMeta = generateMeta;
 const fs_1 = __importDefault(require("fs"));
 const node_fetch_1 = __importDefault(require("node-fetch"));
 const path_1 = __importDefault(require("path"));
@@ -17,7 +22,6 @@ async function createRemoteStream(urlIn) {
     }
     return response;
 }
-exports.createRemoteStream = createRemoteStream;
 // Checks if the passed in string is a valid URL.
 // Returns a boolean.
 function isURL(FileName) {
@@ -30,7 +34,6 @@ function isURL(FileName) {
     }
     return url.protocol === 'http:' || url.protocol === 'https:';
 }
-exports.isURL = isURL;
 async function getLocalOrRemoteStream(uri, out) {
     var _a;
     let stream;
@@ -47,7 +50,6 @@ async function getLocalOrRemoteStream(uri, out) {
     }
     return { totalBytes, stream };
 }
-exports.getLocalOrRemoteStream = getLocalOrRemoteStream;
 function makeLocation(location, protocol) {
     if (protocol === 'uri') {
         return { uri: location, locationType: 'UriLocation' };
@@ -60,7 +62,6 @@ function makeLocation(location, protocol) {
     }
     throw new Error(`invalid protocol ${protocol}`);
 }
-exports.makeLocation = makeLocation;
 function guessAdapterFromFileName(filePath) {
     // const uri = isURL(filePath) ? filePath : path.resolve(filePath)
     const protocol = isURL(filePath) ? 'uri' : 'localPath';
@@ -124,7 +125,6 @@ function guessAdapterFromFileName(filePath) {
         throw new Error(`Unsupported file type ${filePath}`);
     }
 }
-exports.guessAdapterFromFileName = guessAdapterFromFileName;
 /**
  * Generates metadata of index given a filename (trackId or assembly)
  * @param name -  assembly name or trackId
@@ -151,4 +151,3 @@ async function generateMeta({ configs, attributes, outDir, name, exclude, assemb
         assemblyNames,
     }, null, 2));
 }
-exports.generateMeta = generateMeta;

package/dist/types/gff3Adapter.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.indexGff3 = void 0;
+exports.indexGff3 = indexGff3;
 const zlib_1 = require("zlib");
 const readline_1 = __importDefault(require("readline"));
 const util_1 = require("../util");
@@ -60,4 +60,3 @@ async function* indexGff3(config, attributes, inLocation, outLocation, typesToEx
     }
     // console.log('done')
 }
-exports.indexGff3 = indexGff3;

package/dist/types/vcfAdapter.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.indexVcf = void 0;
+exports.indexVcf = indexVcf;
 const zlib_1 = require("zlib");
 const readline_1 = __importDefault(require("readline"));
 const util_1 = require("../util");
@@ -66,4 +66,3 @@ async function* indexVcf(config, attributesToIndex, inLocation, outLocation, typ
         }
     }
 }
-exports.indexVcf = indexVcf;

package/dist/util.js

@@ -3,7 +3,9 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.decodeURIComponentNoThrow = exports.findTrackConfigsToIndex = exports.createTextSearchConf = void 0;
+exports.createTextSearchConf = createTextSearchConf;
+exports.findTrackConfigsToIndex = findTrackConfigsToIndex;
+exports.decodeURIComponentNoThrow = decodeURIComponentNoThrow;
 const util_1 = require("@jbrowse/core/util");
 const sanitize_filename_1 = __importDefault(require("sanitize-filename"));
 const path_1 = __importDefault(require("path"));
@@ -29,7 +31,6 @@ function createTextSearchConf(name, trackIds, assemblyNames, locationPath) {
         assemblyNames,
     };
 }
-exports.createTextSearchConf = createTextSearchConf;
 function findTrackConfigsToIndex(tracks, trackIds, assemblyName) {
     return trackIds
         .map(trackId => {
@@ -42,7 +43,6 @@ function findTrackConfigsToIndex(tracks, trackIds, assemblyName) {
         .filter(track => assemblyName ? track.assemblyNames.includes(assemblyName) : true)
         .filter(track => { var _a; return (0, util_1.isSupportedIndexingAdapter)((_a = track.adapter) === null || _a === void 0 ? void 0 : _a.type); });
 }
-exports.findTrackConfigsToIndex = findTrackConfigsToIndex;
 function decodeURIComponentNoThrow(uri) {
     try {
         return decodeURIComponent(uri);
@@ -52,4 +52,3 @@ function decodeURIComponentNoThrow(uri) {
         return uri;
     }
 }
-exports.decodeURIComponentNoThrow = decodeURIComponentNoThrow;

package/esm/types/common.d.ts

@@ -1,5 +1,3 @@
-/// <reference types="node" />
-/// <reference types="node" />
 import fs from 'fs';
 import fetch from 'node-fetch';
 import { LocalPathLocation, UriLocation, Track } from '../util';

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/text-indexing",
-  "version": "2.12.0",
+  "version": "2.12.2",
   "description": "JBrowse 2 text indexing for desktop",
   "keywords": [
     "jbrowse",
@@ -57,5 +57,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "935f2602d29abc737bb1f493a922b6218d023ae2"
+  "gitHead": "1ec66736ce048a1637f52b7a7ef2eb02d956b771"
 }