@jbrowse/render-core 5.0.0-beta.11 → 5.0.0-beta.14

package/src/shaders/viewRegion.slang

@@ -0,0 +1,13 @@
+// A displayed region as the view-spanning marks (`link`, `connector`) place a
+// bp through it. The table entry is (anchorPx, anchorBpHi, anchorBpLo,
+// signedPxPerBp): an anchor bp near the view, split so a foot's offset from it
+// stays inside float32 at any chromosome position.
+module viewRegion;
+
+import hpmath;
+
+public static const uint VIEW_REGION_MAX = 256u;
+
+public float viewRegionPx(uint bp, float4 r, float hpZero) {
+  return r.x - hpViewportOffsetBp(hpSplitUint(bp), float3(r.y, r.z, 0.0), hpZero) * r.w;
+}

package/esm/shaders/coverageIndicator.generated.js

@@ -1,7 +0,0 @@
-// AUTO-GENERATED by packages/shader-tools/src/shader-codegen from coverageIndicator.slang.
-// Do not edit. Run `pnpm gen:shaders` to regenerate.
-export * from './coverageIndicator.iface.generated.js';
-export const SOURCE = {
-    wgsl: () => import('./coverageIndicator.wgsl.generated.js'),
-    glsl: () => import('./coverageIndicator.glsl.generated.js'),
-};

package/esm/shaders/coverageIndicator.glsl.generated.d.ts

@@ -1,2 +0,0 @@
-export declare const GLSL_VERTEX = "#version 300 es\nprecision highp float;\nprecision highp int;\nstruct CoverageBandUniforms_0\n{\n    float bpHi_0;\n    float bpLo_0;\n    float bpLen_0;\n    float hpZero_0;\n    float canvasW_0;\n    float canvasH_0;\n    float covHeight_0;\n    float covYOffset_0;\n    float covTop_0;\n    float regionMaxDepth_0;\n    float depthDomainMax_0;\n    float depthDomainMin_0;\n    float coverageSymlogConstant_0;\n    float binSize_0;\n    float interbaseHeight_0;\n    float snpMinFreq_0;\n    float reversed_0;\n    int coverageScaleType_0;\n    uint colorCoverage_0;\n    uint colorBaseA_0;\n    uint colorBaseC_0;\n    uint colorBaseG_0;\n    uint colorBaseT_0;\n    uint colorBaseN_0;\n    uint colorInsertionIndicator_0;\n    uint colorSoftclipIndicator_0;\n    uint colorHardclipIndicator_0;\n};\n\n\nlayout(std140) uniform Uniforms\n{\n    float bpHi_0;\n    float bpLo_0;\n    float bpLen_0;\n    float hpZero_0;\n    float canvasW_0;\n    float canvasH_0;\n    float covHeight_0;\n    float covYOffset_0;\n    float covTop_0;\n    float regionMaxDepth_0;\n    float depthDomainMax_0;\n    float depthDomainMin_0;\n    float coverageSymlogConstant_0;\n    float binSize_0;\n    float interbaseHeight_0;\n    float snpMinFreq_0;\n    float reversed_0;\n    int coverageScaleType_0;\n    uint colorCoverage_0;\n    uint colorBaseA_0;\n    uint colorBaseC_0;\n    uint colorBaseG_0;\n    uint colorBaseT_0;\n    uint colorBaseN_0;\n    uint colorInsertionIndicator_0;\n    uint colorSoftclipIndicator_0;\n    uint colorHardclipIndicator_0;\n}u_0;\n\nvec2 hpSplitUint_0(uint value_0)\n{\n\n    uint lo_0 = value_0 & 4095U;\n\n    return vec2(float(value_0 - lo_0), float(lo_0));\n}\n\n\nfloat hpToClipX_0(vec2 splitPos_0, vec3 bpRange_0, float hpZero_1)\n{\n\n    float floorBp_0 = -3.00000000549775576e+38 + hpZero_1;\n    float step_0 = 2.0 / bpRange_0.z;\n\n\n    return dot(vec3(-1.0, max(splitPos_0.x - bpRange_0.x, floorBp_0), max(splitPos_0.y - bpRange_0.y, floorBp_0)), vec3(1.0, step_0, step_0));\n}\n\n\nfloat covBpToClipX_0(uint bp_0, CoverageBandUniforms_0 u_1)\n{\n\n    return hpToClipX_0(hpSplitUint_0(bp_0), vec3(u_1.bpHi_0, u_1.bpLo_0, u_1.bpLen_0), u_1.hpZero_0);\n}\n\n\nfloat pxToClipLen_0(float px_0, float size_0)\n{\n\n    return px_0 * 2.0 / size_0;\n}\n\n\nfloat yPxToClipY_0(float yPx_0, float canvasHeight_0)\n{\n\n    return 1.0 - yPx_0 / canvasHeight_0 * 2.0;\n}\n\n\nfloat covAreaTop_0(CoverageBandUniforms_0 u_2)\n{\n\n    return yPxToClipY_0(u_2.covTop_0, u_2.canvasH_0);\n}\n\n\nfloat covFlipX_0(float x_0, CoverageBandUniforms_0 u_3)\n{\n\n    return mix(x_0, - x_0, u_3.reversed_0);\n}\n\n\nvec4 unpackRGBA_0(uint c_0)\n{\n\n    return vec4(float((c_0 >> 0U) & 255U), float((c_0 >> 8U) & 255U), float((c_0 >> 16U) & 255U), float((c_0 >> 24U) & 255U)) / 255.0;\n}\n\n\nvec3 covClipKindColor_0(float ct_0, CoverageBandUniforms_0 u_4)\n{\n\n    int ci_0 = int(ct_0);\n    if(ci_0 == 2)\n    {\n\n        return unpackRGBA_0(u_4.colorSoftclipIndicator_0).xyz;\n    }\n\n    if(ci_0 == 3)\n    {\n\n        return unpackRGBA_0(u_4.colorHardclipIndicator_0).xyz;\n    }\n\n    return unpackRGBA_0(u_4.colorInsertionIndicator_0).xyz;\n}\n\n\nout vec4 v_color;\n\n\nout vec3 v_bary;\n\n\nlayout(location = 0)\nin uint a_position;\n\n\nlayout(location = 1)\nin float a_colorType;\n\n\nstruct VsOut_0\n{\n    vec4 position_0;\n    vec4 color_0;\n    vec3 bary_0;\n};\n\nvoid main()\n{\n\n    VsOut_0 o_0;\n    uint v_0 = uint(gl_VertexID) % 3U;\n\n    CoverageBandUniforms_0 _S1 = CoverageBandUniforms_0(u_0.bpHi_0, u_0.bpLo_0, u_0.bpLen_0, u_0.hpZero_0, u_0.canvasW_0, u_0.canvasH_0, u_0.covHeight_0, u_0.covYOffset_0, u_0.covTop_0, u_0.regionMaxDepth_0, u_0.depthDomainMax_0, u_0.depthDomainMin_0, u_0.coverageSymlogConstant_0, u_0.binSize_0, u_0.interbaseHeight_0, u_0.snpMinFreq_0, u_0.reversed_0, u_0.coverageScaleType_0, u_0.colorCoverage_0, u_0.colorBaseA_0, u_0.colorBaseC_0, u_0.colorBaseG_0, u_0.colorBaseT_0, u_0.colorBaseN_0, u_0.colorInsertionIndicator_0, u_0.colorSoftclipIndicator_0, u_0.colorHardclipIndicator_0);\n\n    float cx_0 = covBpToClipX_0(a_position, _S1);\n    float tw_0 = pxToClipLen_0(7.0, u_0.canvasW_0);\n    float th_0 = pxToClipLen_0(4.5, u_0.canvasH_0);\n\n    float top_0 = covAreaTop_0(_S1);\n\n    float sx_0;\n\n    float sy_0;\n\n    if(v_0 == 0U)\n    {\n\n        float _S2 = cx_0 - tw_0 * 0.5;\n\n        o_0.bary_0 = vec3(1.0, 0.0, 0.0);\n\n        sx_0 = _S2;\n\n        sy_0 = top_0;\n\n    }\n    else\n    {\n\n        if(v_0 == 1U)\n        {\n\n            float _S3 = cx_0 + tw_0 * 0.5;\n\n            o_0.bary_0 = vec3(0.0, 1.0, 0.0);\n\n            sx_0 = _S3;\n\n            sy_0 = top_0;\n\n        }\n        else\n        {\n\n            float _S4 = top_0 - th_0;\n\n            o_0.bary_0 = vec3(0.0, 0.0, 1.0);\n\n            sx_0 = cx_0;\n\n            sy_0 = _S4;\n\n        }\n\n    }\n\n\n\n    o_0.position_0 = vec4(covFlipX_0(sx_0, _S1), sy_0, 0.0, 1.0);\n    o_0.color_0 = vec4(covClipKindColor_0(a_colorType, _S1), 1.0);\n    VsOut_0 _S5 = o_0;\n\n    gl_Position = o_0.position_0;\n\n    v_color = _S5.color_0;\n\n    v_bary = _S5.bary_0;\n\n    return;\n}\n\n";
-export declare const GLSL_FRAGMENT = "#version 300 es\nprecision highp float;\nprecision highp int;\nlayout(location = 0)\nout vec4 entryPointParam_fs_main_0;\n\n\nin vec4 v_color;\n\n\nin vec3 v_bary;\n\n\nvoid main()\n{\n\n    entryPointParam_fs_main_0 = vec4(v_color.xyz, v_color.w * smoothstep(0.0, 1.0, min(v_bary.y * 3.70000004768371582, v_bary.x * 3.70000004768371582)));\n\n    return;\n}\n\n";

package/esm/shaders/coverageIndicator.glsl.generated.js

@@ -1,4 +0,0 @@
-// AUTO-GENERATED by packages/shader-tools/src/shader-codegen from coverageIndicator.slang.
-// Do not edit. Run `pnpm gen:shaders` to regenerate.
-export const GLSL_VERTEX = "#version 300 es\nprecision highp float;\nprecision highp int;\nstruct CoverageBandUniforms_0\n{\n    float bpHi_0;\n    float bpLo_0;\n    float bpLen_0;\n    float hpZero_0;\n    float canvasW_0;\n    float canvasH_0;\n    float covHeight_0;\n    float covYOffset_0;\n    float covTop_0;\n    float regionMaxDepth_0;\n    float depthDomainMax_0;\n    float depthDomainMin_0;\n    float coverageSymlogConstant_0;\n    float binSize_0;\n    float interbaseHeight_0;\n    float snpMinFreq_0;\n    float reversed_0;\n    int coverageScaleType_0;\n    uint colorCoverage_0;\n    uint colorBaseA_0;\n    uint colorBaseC_0;\n    uint colorBaseG_0;\n    uint colorBaseT_0;\n    uint colorBaseN_0;\n    uint colorInsertionIndicator_0;\n    uint colorSoftclipIndicator_0;\n    uint colorHardclipIndicator_0;\n};\n\n\nlayout(std140) uniform Uniforms\n{\n    float bpHi_0;\n    float bpLo_0;\n    float bpLen_0;\n    float hpZero_0;\n    float canvasW_0;\n    float canvasH_0;\n    float covHeight_0;\n    float covYOffset_0;\n    float covTop_0;\n    float regionMaxDepth_0;\n    float depthDomainMax_0;\n    float depthDomainMin_0;\n    float coverageSymlogConstant_0;\n    float binSize_0;\n    float interbaseHeight_0;\n    float snpMinFreq_0;\n    float reversed_0;\n    int coverageScaleType_0;\n    uint colorCoverage_0;\n    uint colorBaseA_0;\n    uint colorBaseC_0;\n    uint colorBaseG_0;\n    uint colorBaseT_0;\n    uint colorBaseN_0;\n    uint colorInsertionIndicator_0;\n    uint colorSoftclipIndicator_0;\n    uint colorHardclipIndicator_0;\n}u_0;\n\nvec2 hpSplitUint_0(uint value_0)\n{\n\n    uint lo_0 = value_0 & 4095U;\n\n    return vec2(float(value_0 - lo_0), float(lo_0));\n}\n\n\nfloat hpToClipX_0(vec2 splitPos_0, vec3 bpRange_0, float hpZero_1)\n{\n\n    float floorBp_0 = -3.00000000549775576e+38 + hpZero_1;\n    float step_0 = 2.0 / bpRange_0.z;\n\n\n    return dot(vec3(-1.0, max(splitPos_0.x - bpRange_0.x, floorBp_0), max(splitPos_0.y - bpRange_0.y, floorBp_0)), vec3(1.0, step_0, step_0));\n}\n\n\nfloat covBpToClipX_0(uint bp_0, CoverageBandUniforms_0 u_1)\n{\n\n    return hpToClipX_0(hpSplitUint_0(bp_0), vec3(u_1.bpHi_0, u_1.bpLo_0, u_1.bpLen_0), u_1.hpZero_0);\n}\n\n\nfloat pxToClipLen_0(float px_0, float size_0)\n{\n\n    return px_0 * 2.0 / size_0;\n}\n\n\nfloat yPxToClipY_0(float yPx_0, float canvasHeight_0)\n{\n\n    return 1.0 - yPx_0 / canvasHeight_0 * 2.0;\n}\n\n\nfloat covAreaTop_0(CoverageBandUniforms_0 u_2)\n{\n\n    return yPxToClipY_0(u_2.covTop_0, u_2.canvasH_0);\n}\n\n\nfloat covFlipX_0(float x_0, CoverageBandUniforms_0 u_3)\n{\n\n    return mix(x_0, - x_0, u_3.reversed_0);\n}\n\n\nvec4 unpackRGBA_0(uint c_0)\n{\n\n    return vec4(float((c_0 >> 0U) & 255U), float((c_0 >> 8U) & 255U), float((c_0 >> 16U) & 255U), float((c_0 >> 24U) & 255U)) / 255.0;\n}\n\n\nvec3 covClipKindColor_0(float ct_0, CoverageBandUniforms_0 u_4)\n{\n\n    int ci_0 = int(ct_0);\n    if(ci_0 == 2)\n    {\n\n        return unpackRGBA_0(u_4.colorSoftclipIndicator_0).xyz;\n    }\n\n    if(ci_0 == 3)\n    {\n\n        return unpackRGBA_0(u_4.colorHardclipIndicator_0).xyz;\n    }\n\n    return unpackRGBA_0(u_4.colorInsertionIndicator_0).xyz;\n}\n\n\nout vec4 v_color;\n\n\nout vec3 v_bary;\n\n\nlayout(location = 0)\nin uint a_position;\n\n\nlayout(location = 1)\nin float a_colorType;\n\n\nstruct VsOut_0\n{\n    vec4 position_0;\n    vec4 color_0;\n    vec3 bary_0;\n};\n\nvoid main()\n{\n\n    VsOut_0 o_0;\n    uint v_0 = uint(gl_VertexID) % 3U;\n\n    CoverageBandUniforms_0 _S1 = CoverageBandUniforms_0(u_0.bpHi_0, u_0.bpLo_0, u_0.bpLen_0, u_0.hpZero_0, u_0.canvasW_0, u_0.canvasH_0, u_0.covHeight_0, u_0.covYOffset_0, u_0.covTop_0, u_0.regionMaxDepth_0, u_0.depthDomainMax_0, u_0.depthDomainMin_0, u_0.coverageSymlogConstant_0, u_0.binSize_0, u_0.interbaseHeight_0, u_0.snpMinFreq_0, u_0.reversed_0, u_0.coverageScaleType_0, u_0.colorCoverage_0, u_0.colorBaseA_0, u_0.colorBaseC_0, u_0.colorBaseG_0, u_0.colorBaseT_0, u_0.colorBaseN_0, u_0.colorInsertionIndicator_0, u_0.colorSoftclipIndicator_0, u_0.colorHardclipIndicator_0);\n\n    float cx_0 = covBpToClipX_0(a_position, _S1);\n    float tw_0 = pxToClipLen_0(7.0, u_0.canvasW_0);\n    float th_0 = pxToClipLen_0(4.5, u_0.canvasH_0);\n\n    float top_0 = covAreaTop_0(_S1);\n\n    float sx_0;\n\n    float sy_0;\n\n    if(v_0 == 0U)\n    {\n\n        float _S2 = cx_0 - tw_0 * 0.5;\n\n        o_0.bary_0 = vec3(1.0, 0.0, 0.0);\n\n        sx_0 = _S2;\n\n        sy_0 = top_0;\n\n    }\n    else\n    {\n\n        if(v_0 == 1U)\n        {\n\n            float _S3 = cx_0 + tw_0 * 0.5;\n\n            o_0.bary_0 = vec3(0.0, 1.0, 0.0);\n\n            sx_0 = _S3;\n\n            sy_0 = top_0;\n\n        }\n        else\n        {\n\n            float _S4 = top_0 - th_0;\n\n            o_0.bary_0 = vec3(0.0, 0.0, 1.0);\n\n            sx_0 = cx_0;\n\n            sy_0 = _S4;\n\n        }\n\n    }\n\n\n\n    o_0.position_0 = vec4(covFlipX_0(sx_0, _S1), sy_0, 0.0, 1.0);\n    o_0.color_0 = vec4(covClipKindColor_0(a_colorType, _S1), 1.0);\n    VsOut_0 _S5 = o_0;\n\n    gl_Position = o_0.position_0;\n\n    v_color = _S5.color_0;\n\n    v_bary = _S5.bary_0;\n\n    return;\n}\n\n";
-export const GLSL_FRAGMENT = "#version 300 es\nprecision highp float;\nprecision highp int;\nlayout(location = 0)\nout vec4 entryPointParam_fs_main_0;\n\n\nin vec4 v_color;\n\n\nin vec3 v_bary;\n\n\nvoid main()\n{\n\n    entryPointParam_fs_main_0 = vec4(v_color.xyz, v_color.w * smoothstep(0.0, 1.0, min(v_bary.y * 3.70000004768371582, v_bary.x * 3.70000004768371582)));\n\n    return;\n}\n\n";

package/esm/shaders/coverageIndicator.iface.generated.d.ts

@@ -1,85 +0,0 @@
-import type { VertexAttributeLayout, ShaderBinding } from '@jbrowse/render-core/hal';
-export declare const BINDINGS: readonly ShaderBinding[];
-export declare const VERTS_PER_INSTANCE = 3;
-export declare const UNIFORMS_SIZE_BYTES = 112;
-export declare const UNIFORM_OFFSET_F32: {
-    readonly bpHi: 0;
-    readonly bpLo: 1;
-    readonly bpLen: 2;
-    readonly hpZero: 3;
-    readonly canvasW: 4;
-    readonly canvasH: 5;
-    readonly covHeight: 6;
-    readonly covYOffset: 7;
-    readonly covTop: 8;
-    readonly regionMaxDepth: 9;
-    readonly depthDomainMax: 10;
-    readonly depthDomainMin: 11;
-    readonly coverageSymlogConstant: 12;
-    readonly binSize: 13;
-    readonly interbaseHeight: 14;
-    readonly snpMinFreq: 15;
-    readonly reversed: 16;
-};
-export declare const UNIFORM_OFFSET_U32: {
-    readonly colorCoverage: 18;
-    readonly colorBaseA: 19;
-    readonly colorBaseC: 20;
-    readonly colorBaseG: 21;
-    readonly colorBaseT: 22;
-    readonly colorBaseN: 23;
-    readonly colorInsertionIndicator: 24;
-    readonly colorSoftclipIndicator: 25;
-    readonly colorHardclipIndicator: 26;
-};
-export declare const UNIFORM_OFFSET_I32: {
-    readonly coverageScaleType: 17;
-};
-export interface Uniforms {
-    bpHi: number;
-    bpLo: number;
-    bpLen: number;
-    hpZero: number;
-    canvasW: number;
-    canvasH: number;
-    covHeight: number;
-    covYOffset: number;
-    covTop: number;
-    regionMaxDepth: number;
-    depthDomainMax: number;
-    depthDomainMin: number;
-    coverageSymlogConstant: number;
-    binSize: number;
-    interbaseHeight: number;
-    snpMinFreq: number;
-    reversed: number;
-    coverageScaleType: number;
-    colorCoverage: number;
-    colorBaseA: number;
-    colorBaseC: number;
-    colorBaseG: number;
-    colorBaseT: number;
-    colorBaseN: number;
-    colorInsertionIndicator: number;
-    colorSoftclipIndicator: number;
-    colorHardclipIndicator: number;
-}
-export declare function writeUniforms(buf: ArrayBuffer, uniforms: Uniforms): void;
-export declare const INSTANCE_STRIDE_BYTES = 8;
-export declare const INSTANCE_STRIDE_WORDS = 2;
-export declare const INSTANCE_OFFSET_F32: {
-    readonly colorType: 1;
-};
-export declare const INSTANCE_OFFSET_U32: {
-    readonly position: 0;
-};
-export declare const VERTEX_ATTRIBUTES: readonly VertexAttributeLayout[];
-export interface InstanceArrays {
-    position: ArrayLike<number>;
-    colorType: ArrayLike<number>;
-}
-export declare function packInstances(arrays: InstanceArrays, numInstances: number, buf?: ArrayBuffer): ArrayBuffer;
-export declare function getInstancePosition(u32: Uint32Array, i: number): number;
-export declare function setInstancePosition(u32: Uint32Array, i: number, v: number): void;
-export declare function getInstanceColorType(f32: Float32Array, i: number): number;
-export declare function setInstanceColorType(f32: Float32Array, i: number, v: number): void;

package/esm/shaders/coverageIndicator.iface.generated.js

@@ -1,114 +0,0 @@
-// AUTO-GENERATED by packages/shader-tools/src/shader-codegen from coverageIndicator.slang.
-// Do not edit. Run `pnpm gen:shaders` to regenerate.
-export const BINDINGS = [
-    { index: 1, kind: 'uniform', name: 'u', stages: ['vertex'] },
-];
-export const VERTS_PER_INSTANCE = 3;
-export const UNIFORMS_SIZE_BYTES = 112;
-// Word indices into a Float32Array view over the uniform buffer.
-export const UNIFORM_OFFSET_F32 = {
-    bpHi: 0,
-    bpLo: 1,
-    bpLen: 2,
-    hpZero: 3,
-    canvasW: 4,
-    canvasH: 5,
-    covHeight: 6,
-    covYOffset: 7,
-    covTop: 8,
-    regionMaxDepth: 9,
-    depthDomainMax: 10,
-    depthDomainMin: 11,
-    coverageSymlogConstant: 12,
-    binSize: 13,
-    interbaseHeight: 14,
-    snpMinFreq: 15,
-    reversed: 16,
-};
-// Word indices into a Uint32Array view over the uniform buffer.
-export const UNIFORM_OFFSET_U32 = {
-    colorCoverage: 18,
-    colorBaseA: 19,
-    colorBaseC: 20,
-    colorBaseG: 21,
-    colorBaseT: 22,
-    colorBaseN: 23,
-    colorInsertionIndicator: 24,
-    colorSoftclipIndicator: 25,
-    colorHardclipIndicator: 26,
-};
-// Word indices into a Int32Array view over the uniform buffer.
-export const UNIFORM_OFFSET_I32 = {
-    coverageScaleType: 17,
-};
-export function writeUniforms(buf, uniforms) {
-    const f32 = new Float32Array(buf);
-    const u32 = new Uint32Array(buf);
-    const i32 = new Int32Array(buf);
-    f32[0] = uniforms.bpHi;
-    f32[1] = uniforms.bpLo;
-    f32[2] = uniforms.bpLen;
-    f32[3] = uniforms.hpZero;
-    f32[4] = uniforms.canvasW;
-    f32[5] = uniforms.canvasH;
-    f32[6] = uniforms.covHeight;
-    f32[7] = uniforms.covYOffset;
-    f32[8] = uniforms.covTop;
-    f32[9] = uniforms.regionMaxDepth;
-    f32[10] = uniforms.depthDomainMax;
-    f32[11] = uniforms.depthDomainMin;
-    f32[12] = uniforms.coverageSymlogConstant;
-    f32[13] = uniforms.binSize;
-    f32[14] = uniforms.interbaseHeight;
-    f32[15] = uniforms.snpMinFreq;
-    f32[16] = uniforms.reversed;
-    i32[17] = uniforms.coverageScaleType;
-    u32[18] = uniforms.colorCoverage;
-    u32[19] = uniforms.colorBaseA;
-    u32[20] = uniforms.colorBaseC;
-    u32[21] = uniforms.colorBaseG;
-    u32[22] = uniforms.colorBaseT;
-    u32[23] = uniforms.colorBaseN;
-    u32[24] = uniforms.colorInsertionIndicator;
-    u32[25] = uniforms.colorSoftclipIndicator;
-    u32[26] = uniforms.colorHardclipIndicator;
-}
-export const INSTANCE_STRIDE_BYTES = 8;
-export const INSTANCE_STRIDE_WORDS = 2;
-// Word indices into a Float32Array view over the instance buffer.
-export const INSTANCE_OFFSET_F32 = {
-    colorType: 1,
-};
-// Word indices into a Uint32Array view over the instance buffer.
-export const INSTANCE_OFFSET_U32 = {
-    position: 0,
-};
-export const VERTEX_ATTRIBUTES = [
-    { name: 'a_position', components: 1, type: 'uint', offsetBytes: 0, integer: true },
-    { name: 'a_colorType', components: 1, type: 'float', offsetBytes: 4, integer: false },
-];
-export function packInstances(arrays, numInstances, buf = new ArrayBuffer(numInstances * INSTANCE_STRIDE_BYTES)) {
-    const f32 = new Float32Array(buf);
-    const u32 = new Uint32Array(buf);
-    const { position, colorType } = arrays;
-    for (let i = 0; i < numInstances; i++) {
-        const o = i * INSTANCE_STRIDE_WORDS;
-        u32[o + 0] = position[i];
-        f32[o + 1] = colorType[i];
-    }
-    return buf;
-}
-// Instance `i`'s `position`.
-export function getInstancePosition(u32, i) {
-    return u32[i * INSTANCE_STRIDE_WORDS];
-}
-export function setInstancePosition(u32, i, v) {
-    u32[i * INSTANCE_STRIDE_WORDS] = v;
-}
-// Instance `i`'s `colorType`.
-export function getInstanceColorType(f32, i) {
-    return f32[i * INSTANCE_STRIDE_WORDS + 1];
-}
-export function setInstanceColorType(f32, i, v) {
-    f32[i * INSTANCE_STRIDE_WORDS + 1] = v;
-}

package/esm/shaders/coverageIndicator.wgsl.generated.d.ts

@@ -1 +0,0 @@
-export declare const WGSL_SOURCE = "struct CoverageBandUniforms_std140_0\n{\n    @align(16) bpHi_0 : f32,\n    @align(4) bpLo_0 : f32,\n    @align(8) bpLen_0 : f32,\n    @align(4) hpZero_0 : f32,\n    @align(16) canvasW_0 : f32,\n    @align(4) canvasH_0 : f32,\n    @align(8) covHeight_0 : f32,\n    @align(4) covYOffset_0 : f32,\n    @align(16) covTop_0 : f32,\n    @align(4) regionMaxDepth_0 : f32,\n    @align(8) depthDomainMax_0 : f32,\n    @align(4) depthDomainMin_0 : f32,\n    @align(16) coverageSymlogConstant_0 : f32,\n    @align(4) binSize_0 : f32,\n    @align(8) interbaseHeight_0 : f32,\n    @align(4) snpMinFreq_0 : f32,\n    @align(16) reversed_0 : f32,\n    @align(4) coverageScaleType_0 : i32,\n    @align(8) colorCoverage_0 : u32,\n    @align(4) colorBaseA_0 : u32,\n    @align(16) colorBaseC_0 : u32,\n    @align(4) colorBaseG_0 : u32,\n    @align(8) colorBaseT_0 : u32,\n    @align(4) colorBaseN_0 : u32,\n    @align(16) colorInsertionIndicator_0 : u32,\n    @align(4) colorSoftclipIndicator_0 : u32,\n    @align(8) colorHardclipIndicator_0 : u32,\n};\n\n@binding(1) @group(0) var<uniform> u_0 : CoverageBandUniforms_std140_0;\nfn hpSplitUint_0( value_0 : u32) -> vec2<f32>\n{\n    var lo_0 : u32 = (value_0 & (u32(4095)));\n    return vec2<f32>(f32(value_0 - lo_0), f32(lo_0));\n}\n\nfn hpToClipX_0( splitPos_0 : vec2<f32>,  bpRange_0 : vec3<f32>,  hpZero_1 : f32) -> f32\n{\n    var floorBp_0 : f32 = -3.00000000549775576e+38f + hpZero_1;\n    var step_0 : f32 = 2.0f / bpRange_0.z;\n    return dot(vec3<f32>(-1.0f, max(splitPos_0.x - bpRange_0.x, floorBp_0), max(splitPos_0.y - bpRange_0.y, floorBp_0)), vec3<f32>(1.0f, step_0, step_0));\n}\n\nfn covBpToClipX_0( bp_0 : u32,  u_1 : ptr<function, CoverageBandUniforms_std140_0>) -> f32\n{\n    return hpToClipX_0(hpSplitUint_0(bp_0), vec3<f32>((*u_1).bpHi_0, (*u_1).bpLo_0, (*u_1).bpLen_0), (*u_1).hpZero_0);\n}\n\nfn pxToClipLen_0( px_0 : f32,  size_0 : f32) -> f32\n{\n    return px_0 * 2.0f / size_0;\n}\n\nfn yPxToClipY_0( yPx_0 : f32,  canvasHeight_0 : f32) -> f32\n{\n    return 1.0f - yPx_0 / canvasHeight_0 * 2.0f;\n}\n\nfn covAreaTop_0( u_2 : ptr<function, CoverageBandUniforms_std140_0>) -> f32\n{\n    return yPxToClipY_0((*u_2).covTop_0, (*u_2).canvasH_0);\n}\n\nfn covFlipX_0( x_0 : f32,  u_3 : ptr<function, CoverageBandUniforms_std140_0>) -> f32\n{\n    return mix(x_0, - x_0, (*u_3).reversed_0);\n}\n\nfn unpackRGBA_0( c_0 : u32) -> vec4<f32>\n{\n    return vec4<f32>(f32((((c_0 >> (u32(0)))) & (u32(255)))), f32((((c_0 >> (u32(8)))) & (u32(255)))), f32((((c_0 >> (u32(16)))) & (u32(255)))), f32((((c_0 >> (u32(24)))) & (u32(255))))) / vec4<f32>(255.0f);\n}\n\nfn covClipKindColor_0( ct_0 : f32,  u_4 : ptr<function, CoverageBandUniforms_std140_0>) -> vec3<f32>\n{\n    var ci_0 : i32 = i32(ct_0);\n    if(ci_0 == i32(2))\n    {\n        return unpackRGBA_0((*u_4).colorSoftclipIndicator_0).xyz;\n    }\n    if(ci_0 == i32(3))\n    {\n        return unpackRGBA_0((*u_4).colorHardclipIndicator_0).xyz;\n    }\n    return unpackRGBA_0((*u_4).colorInsertionIndicator_0).xyz;\n}\n\nstruct VsOut_0\n{\n    @builtin(position) position_0 : vec4<f32>,\n    @location(0) color_0 : vec4<f32>,\n    @location(1) bary_0 : vec3<f32>,\n};\n\nstruct vertexInput_0\n{\n    @location(0) position_1 : u32,\n    @location(1) colorType_0 : f32,\n};\n\n@vertex\nfn vs_main( _S1 : vertexInput_0, @builtin(vertex_index) vid_0 : u32) -> VsOut_0\n{\n    var o_0 : VsOut_0;\n    var v_0 : u32 = vid_0 % u32(3);\n    var _S2 : CoverageBandUniforms_std140_0 = u_0;\n    var _S3 : f32 = covBpToClipX_0(_S1.position_1, &(_S2));\n    var tw_0 : f32 = pxToClipLen_0(7.0f, u_0.canvasW_0);\n    var th_0 : f32 = pxToClipLen_0(4.5f, u_0.canvasH_0);\n    var _S4 : f32 = covAreaTop_0(&(_S2));\n    var sx_0 : f32;\n    var sy_0 : f32;\n    if(v_0 == u32(0))\n    {\n        var _S5 : f32 = _S3 - tw_0 * 0.5f;\n        o_0.bary_0 = vec3<f32>(1.0f, 0.0f, 0.0f);\n        sx_0 = _S5;\n        sy_0 = _S4;\n    }\n    else\n    {\n        if(v_0 == u32(1))\n        {\n            var _S6 : f32 = _S3 + tw_0 * 0.5f;\n            o_0.bary_0 = vec3<f32>(0.0f, 1.0f, 0.0f);\n            sx_0 = _S6;\n            sy_0 = _S4;\n        }\n        else\n        {\n            var _S7 : f32 = _S4 - th_0;\n            o_0.bary_0 = vec3<f32>(0.0f, 0.0f, 1.0f);\n            sx_0 = _S3;\n            sy_0 = _S7;\n        }\n    }\n    var _S8 : f32 = covFlipX_0(sx_0, &(_S2));\n    o_0.position_0 = vec4<f32>(_S8, sy_0, 0.0f, 1.0f);\n    var _S9 : vec3<f32> = covClipKindColor_0(_S1.colorType_0, &(_S2));\n    o_0.color_0 = vec4<f32>(_S9, 1.0f);\n    return o_0;\n}\n\nstruct pixelOutput_0\n{\n    @location(0) output_0 : vec4<f32>,\n};\n\nstruct pixelInput_0\n{\n    @location(0) color_1 : vec4<f32>,\n    @location(1) bary_1 : vec3<f32>,\n};\n\n@fragment\nfn fs_main( _S10 : pixelInput_0, @builtin(position) position_2 : vec4<f32>) -> pixelOutput_0\n{\n    var _S11 : pixelOutput_0 = pixelOutput_0( vec4<f32>(_S10.color_1.xyz, _S10.color_1.w * smoothstep(0.0f, 1.0f, min(_S10.bary_1.y * 3.70000004768371582f, _S10.bary_1.x * 3.70000004768371582f))) );\n    return _S11;\n}\n\n";

package/esm/shaders/coverageIndicator.wgsl.generated.js

@@ -1,3 +0,0 @@
-// AUTO-GENERATED by packages/shader-tools/src/shader-codegen from coverageIndicator.slang.
-// Do not edit. Run `pnpm gen:shaders` to regenerate.
-export const WGSL_SOURCE = "struct CoverageBandUniforms_std140_0\n{\n    @align(16) bpHi_0 : f32,\n    @align(4) bpLo_0 : f32,\n    @align(8) bpLen_0 : f32,\n    @align(4) hpZero_0 : f32,\n    @align(16) canvasW_0 : f32,\n    @align(4) canvasH_0 : f32,\n    @align(8) covHeight_0 : f32,\n    @align(4) covYOffset_0 : f32,\n    @align(16) covTop_0 : f32,\n    @align(4) regionMaxDepth_0 : f32,\n    @align(8) depthDomainMax_0 : f32,\n    @align(4) depthDomainMin_0 : f32,\n    @align(16) coverageSymlogConstant_0 : f32,\n    @align(4) binSize_0 : f32,\n    @align(8) interbaseHeight_0 : f32,\n    @align(4) snpMinFreq_0 : f32,\n    @align(16) reversed_0 : f32,\n    @align(4) coverageScaleType_0 : i32,\n    @align(8) colorCoverage_0 : u32,\n    @align(4) colorBaseA_0 : u32,\n    @align(16) colorBaseC_0 : u32,\n    @align(4) colorBaseG_0 : u32,\n    @align(8) colorBaseT_0 : u32,\n    @align(4) colorBaseN_0 : u32,\n    @align(16) colorInsertionIndicator_0 : u32,\n    @align(4) colorSoftclipIndicator_0 : u32,\n    @align(8) colorHardclipIndicator_0 : u32,\n};\n\n@binding(1) @group(0) var<uniform> u_0 : CoverageBandUniforms_std140_0;\nfn hpSplitUint_0( value_0 : u32) -> vec2<f32>\n{\n    var lo_0 : u32 = (value_0 & (u32(4095)));\n    return vec2<f32>(f32(value_0 - lo_0), f32(lo_0));\n}\n\nfn hpToClipX_0( splitPos_0 : vec2<f32>,  bpRange_0 : vec3<f32>,  hpZero_1 : f32) -> f32\n{\n    var floorBp_0 : f32 = -3.00000000549775576e+38f + hpZero_1;\n    var step_0 : f32 = 2.0f / bpRange_0.z;\n    return dot(vec3<f32>(-1.0f, max(splitPos_0.x - bpRange_0.x, floorBp_0), max(splitPos_0.y - bpRange_0.y, floorBp_0)), vec3<f32>(1.0f, step_0, step_0));\n}\n\nfn covBpToClipX_0( bp_0 : u32,  u_1 : ptr<function, CoverageBandUniforms_std140_0>) -> f32\n{\n    return hpToClipX_0(hpSplitUint_0(bp_0), vec3<f32>((*u_1).bpHi_0, (*u_1).bpLo_0, (*u_1).bpLen_0), (*u_1).hpZero_0);\n}\n\nfn pxToClipLen_0( px_0 : f32,  size_0 : f32) -> f32\n{\n    return px_0 * 2.0f / size_0;\n}\n\nfn yPxToClipY_0( yPx_0 : f32,  canvasHeight_0 : f32) -> f32\n{\n    return 1.0f - yPx_0 / canvasHeight_0 * 2.0f;\n}\n\nfn covAreaTop_0( u_2 : ptr<function, CoverageBandUniforms_std140_0>) -> f32\n{\n    return yPxToClipY_0((*u_2).covTop_0, (*u_2).canvasH_0);\n}\n\nfn covFlipX_0( x_0 : f32,  u_3 : ptr<function, CoverageBandUniforms_std140_0>) -> f32\n{\n    return mix(x_0, - x_0, (*u_3).reversed_0);\n}\n\nfn unpackRGBA_0( c_0 : u32) -> vec4<f32>\n{\n    return vec4<f32>(f32((((c_0 >> (u32(0)))) & (u32(255)))), f32((((c_0 >> (u32(8)))) & (u32(255)))), f32((((c_0 >> (u32(16)))) & (u32(255)))), f32((((c_0 >> (u32(24)))) & (u32(255))))) / vec4<f32>(255.0f);\n}\n\nfn covClipKindColor_0( ct_0 : f32,  u_4 : ptr<function, CoverageBandUniforms_std140_0>) -> vec3<f32>\n{\n    var ci_0 : i32 = i32(ct_0);\n    if(ci_0 == i32(2))\n    {\n        return unpackRGBA_0((*u_4).colorSoftclipIndicator_0).xyz;\n    }\n    if(ci_0 == i32(3))\n    {\n        return unpackRGBA_0((*u_4).colorHardclipIndicator_0).xyz;\n    }\n    return unpackRGBA_0((*u_4).colorInsertionIndicator_0).xyz;\n}\n\nstruct VsOut_0\n{\n    @builtin(position) position_0 : vec4<f32>,\n    @location(0) color_0 : vec4<f32>,\n    @location(1) bary_0 : vec3<f32>,\n};\n\nstruct vertexInput_0\n{\n    @location(0) position_1 : u32,\n    @location(1) colorType_0 : f32,\n};\n\n@vertex\nfn vs_main( _S1 : vertexInput_0, @builtin(vertex_index) vid_0 : u32) -> VsOut_0\n{\n    var o_0 : VsOut_0;\n    var v_0 : u32 = vid_0 % u32(3);\n    var _S2 : CoverageBandUniforms_std140_0 = u_0;\n    var _S3 : f32 = covBpToClipX_0(_S1.position_1, &(_S2));\n    var tw_0 : f32 = pxToClipLen_0(7.0f, u_0.canvasW_0);\n    var th_0 : f32 = pxToClipLen_0(4.5f, u_0.canvasH_0);\n    var _S4 : f32 = covAreaTop_0(&(_S2));\n    var sx_0 : f32;\n    var sy_0 : f32;\n    if(v_0 == u32(0))\n    {\n        var _S5 : f32 = _S3 - tw_0 * 0.5f;\n        o_0.bary_0 = vec3<f32>(1.0f, 0.0f, 0.0f);\n        sx_0 = _S5;\n        sy_0 = _S4;\n    }\n    else\n    {\n        if(v_0 == u32(1))\n        {\n            var _S6 : f32 = _S3 + tw_0 * 0.5f;\n            o_0.bary_0 = vec3<f32>(0.0f, 1.0f, 0.0f);\n            sx_0 = _S6;\n            sy_0 = _S4;\n        }\n        else\n        {\n            var _S7 : f32 = _S4 - th_0;\n            o_0.bary_0 = vec3<f32>(0.0f, 0.0f, 1.0f);\n            sx_0 = _S3;\n            sy_0 = _S7;\n        }\n    }\n    var _S8 : f32 = covFlipX_0(sx_0, &(_S2));\n    o_0.position_0 = vec4<f32>(_S8, sy_0, 0.0f, 1.0f);\n    var _S9 : vec3<f32> = covClipKindColor_0(_S1.colorType_0, &(_S2));\n    o_0.color_0 = vec4<f32>(_S9, 1.0f);\n    return o_0;\n}\n\nstruct pixelOutput_0\n{\n    @location(0) output_0 : vec4<f32>,\n};\n\nstruct pixelInput_0\n{\n    @location(0) color_1 : vec4<f32>,\n    @location(1) bary_1 : vec3<f32>,\n};\n\n@fragment\nfn fs_main( _S10 : pixelInput_0, @builtin(position) position_2 : vec4<f32>) -> pixelOutput_0\n{\n    var _S11 : pixelOutput_0 = pixelOutput_0( vec4<f32>(_S10.color_1.xyz, _S10.color_1.w * smoothstep(0.0f, 1.0f, min(_S10.bary_1.y * 3.70000004768371582f, _S10.bary_1.x * 3.70000004768371582f))) );\n    return _S11;\n}\n\n";

package/src/shaders/coverageIndicator.generated.ts

@@ -1,11 +0,0 @@
-// AUTO-GENERATED by packages/shader-tools/src/shader-codegen from coverageIndicator.slang.
-// Do not edit. Run `pnpm gen:shaders` to regenerate.
-
-import type { ShaderSource } from '@jbrowse/render-core/hal'
-
-export * from './coverageIndicator.iface.generated.ts'
-
-export const SOURCE: ShaderSource = {
-  wgsl: () => import('./coverageIndicator.wgsl.generated.ts'),
-  glsl: () => import('./coverageIndicator.glsl.generated.ts'),
-}

package/src/shaders/coverageIndicator.glsl.generated.ts

@@ -1,6 +0,0 @@
-// AUTO-GENERATED by packages/shader-tools/src/shader-codegen from coverageIndicator.slang.
-// Do not edit. Run `pnpm gen:shaders` to regenerate.
-
-export const GLSL_VERTEX = "#version 300 es\nprecision highp float;\nprecision highp int;\nstruct CoverageBandUniforms_0\n{\n    float bpHi_0;\n    float bpLo_0;\n    float bpLen_0;\n    float hpZero_0;\n    float canvasW_0;\n    float canvasH_0;\n    float covHeight_0;\n    float covYOffset_0;\n    float covTop_0;\n    float regionMaxDepth_0;\n    float depthDomainMax_0;\n    float depthDomainMin_0;\n    float coverageSymlogConstant_0;\n    float binSize_0;\n    float interbaseHeight_0;\n    float snpMinFreq_0;\n    float reversed_0;\n    int coverageScaleType_0;\n    uint colorCoverage_0;\n    uint colorBaseA_0;\n    uint colorBaseC_0;\n    uint colorBaseG_0;\n    uint colorBaseT_0;\n    uint colorBaseN_0;\n    uint colorInsertionIndicator_0;\n    uint colorSoftclipIndicator_0;\n    uint colorHardclipIndicator_0;\n};\n\n\nlayout(std140) uniform Uniforms\n{\n    float bpHi_0;\n    float bpLo_0;\n    float bpLen_0;\n    float hpZero_0;\n    float canvasW_0;\n    float canvasH_0;\n    float covHeight_0;\n    float covYOffset_0;\n    float covTop_0;\n    float regionMaxDepth_0;\n    float depthDomainMax_0;\n    float depthDomainMin_0;\n    float coverageSymlogConstant_0;\n    float binSize_0;\n    float interbaseHeight_0;\n    float snpMinFreq_0;\n    float reversed_0;\n    int coverageScaleType_0;\n    uint colorCoverage_0;\n    uint colorBaseA_0;\n    uint colorBaseC_0;\n    uint colorBaseG_0;\n    uint colorBaseT_0;\n    uint colorBaseN_0;\n    uint colorInsertionIndicator_0;\n    uint colorSoftclipIndicator_0;\n    uint colorHardclipIndicator_0;\n}u_0;\n\nvec2 hpSplitUint_0(uint value_0)\n{\n\n    uint lo_0 = value_0 & 4095U;\n\n    return vec2(float(value_0 - lo_0), float(lo_0));\n}\n\n\nfloat hpToClipX_0(vec2 splitPos_0, vec3 bpRange_0, float hpZero_1)\n{\n\n    float floorBp_0 = -3.00000000549775576e+38 + hpZero_1;\n    float step_0 = 2.0 / bpRange_0.z;\n\n\n    return dot(vec3(-1.0, max(splitPos_0.x - bpRange_0.x, floorBp_0), max(splitPos_0.y - bpRange_0.y, floorBp_0)), vec3(1.0, step_0, step_0));\n}\n\n\nfloat covBpToClipX_0(uint bp_0, CoverageBandUniforms_0 u_1)\n{\n\n    return hpToClipX_0(hpSplitUint_0(bp_0), vec3(u_1.bpHi_0, u_1.bpLo_0, u_1.bpLen_0), u_1.hpZero_0);\n}\n\n\nfloat pxToClipLen_0(float px_0, float size_0)\n{\n\n    return px_0 * 2.0 / size_0;\n}\n\n\nfloat yPxToClipY_0(float yPx_0, float canvasHeight_0)\n{\n\n    return 1.0 - yPx_0 / canvasHeight_0 * 2.0;\n}\n\n\nfloat covAreaTop_0(CoverageBandUniforms_0 u_2)\n{\n\n    return yPxToClipY_0(u_2.covTop_0, u_2.canvasH_0);\n}\n\n\nfloat covFlipX_0(float x_0, CoverageBandUniforms_0 u_3)\n{\n\n    return mix(x_0, - x_0, u_3.reversed_0);\n}\n\n\nvec4 unpackRGBA_0(uint c_0)\n{\n\n    return vec4(float((c_0 >> 0U) & 255U), float((c_0 >> 8U) & 255U), float((c_0 >> 16U) & 255U), float((c_0 >> 24U) & 255U)) / 255.0;\n}\n\n\nvec3 covClipKindColor_0(float ct_0, CoverageBandUniforms_0 u_4)\n{\n\n    int ci_0 = int(ct_0);\n    if(ci_0 == 2)\n    {\n\n        return unpackRGBA_0(u_4.colorSoftclipIndicator_0).xyz;\n    }\n\n    if(ci_0 == 3)\n    {\n\n        return unpackRGBA_0(u_4.colorHardclipIndicator_0).xyz;\n    }\n\n    return unpackRGBA_0(u_4.colorInsertionIndicator_0).xyz;\n}\n\n\nout vec4 v_color;\n\n\nout vec3 v_bary;\n\n\nlayout(location = 0)\nin uint a_position;\n\n\nlayout(location = 1)\nin float a_colorType;\n\n\nstruct VsOut_0\n{\n    vec4 position_0;\n    vec4 color_0;\n    vec3 bary_0;\n};\n\nvoid main()\n{\n\n    VsOut_0 o_0;\n    uint v_0 = uint(gl_VertexID) % 3U;\n\n    CoverageBandUniforms_0 _S1 = CoverageBandUniforms_0(u_0.bpHi_0, u_0.bpLo_0, u_0.bpLen_0, u_0.hpZero_0, u_0.canvasW_0, u_0.canvasH_0, u_0.covHeight_0, u_0.covYOffset_0, u_0.covTop_0, u_0.regionMaxDepth_0, u_0.depthDomainMax_0, u_0.depthDomainMin_0, u_0.coverageSymlogConstant_0, u_0.binSize_0, u_0.interbaseHeight_0, u_0.snpMinFreq_0, u_0.reversed_0, u_0.coverageScaleType_0, u_0.colorCoverage_0, u_0.colorBaseA_0, u_0.colorBaseC_0, u_0.colorBaseG_0, u_0.colorBaseT_0, u_0.colorBaseN_0, u_0.colorInsertionIndicator_0, u_0.colorSoftclipIndicator_0, u_0.colorHardclipIndicator_0);\n\n    float cx_0 = covBpToClipX_0(a_position, _S1);\n    float tw_0 = pxToClipLen_0(7.0, u_0.canvasW_0);\n    float th_0 = pxToClipLen_0(4.5, u_0.canvasH_0);\n\n    float top_0 = covAreaTop_0(_S1);\n\n    float sx_0;\n\n    float sy_0;\n\n    if(v_0 == 0U)\n    {\n\n        float _S2 = cx_0 - tw_0 * 0.5;\n\n        o_0.bary_0 = vec3(1.0, 0.0, 0.0);\n\n        sx_0 = _S2;\n\n        sy_0 = top_0;\n\n    }\n    else\n    {\n\n        if(v_0 == 1U)\n        {\n\n            float _S3 = cx_0 + tw_0 * 0.5;\n\n            o_0.bary_0 = vec3(0.0, 1.0, 0.0);\n\n            sx_0 = _S3;\n\n            sy_0 = top_0;\n\n        }\n        else\n        {\n\n            float _S4 = top_0 - th_0;\n\n            o_0.bary_0 = vec3(0.0, 0.0, 1.0);\n\n            sx_0 = cx_0;\n\n            sy_0 = _S4;\n\n        }\n\n    }\n\n\n\n    o_0.position_0 = vec4(covFlipX_0(sx_0, _S1), sy_0, 0.0, 1.0);\n    o_0.color_0 = vec4(covClipKindColor_0(a_colorType, _S1), 1.0);\n    VsOut_0 _S5 = o_0;\n\n    gl_Position = o_0.position_0;\n\n    v_color = _S5.color_0;\n\n    v_bary = _S5.bary_0;\n\n    return;\n}\n\n"
-
-export const GLSL_FRAGMENT = "#version 300 es\nprecision highp float;\nprecision highp int;\nlayout(location = 0)\nout vec4 entryPointParam_fs_main_0;\n\n\nin vec4 v_color;\n\n\nin vec3 v_bary;\n\n\nvoid main()\n{\n\n    entryPointParam_fs_main_0 = vec4(v_color.xyz, v_color.w * smoothstep(0.0, 1.0, min(v_bary.y * 3.70000004768371582, v_bary.x * 3.70000004768371582)));\n\n    return;\n}\n\n"

package/src/shaders/coverageIndicator.iface.generated.ts

@@ -1,172 +0,0 @@
-// AUTO-GENERATED by packages/shader-tools/src/shader-codegen from coverageIndicator.slang.
-// Do not edit. Run `pnpm gen:shaders` to regenerate.
-
-import type { VertexAttributeLayout, ShaderBinding } from '@jbrowse/render-core/hal'
-
-export const BINDINGS: readonly ShaderBinding[] = [
-  { index: 1, kind: 'uniform', name: 'u', stages: ['vertex'] },
-]
-
-export const VERTS_PER_INSTANCE = 3
-
-export const UNIFORMS_SIZE_BYTES = 112
-
-// Word indices into a Float32Array view over the uniform buffer.
-export const UNIFORM_OFFSET_F32 = {
-  bpHi: 0,
-  bpLo: 1,
-  bpLen: 2,
-  hpZero: 3,
-  canvasW: 4,
-  canvasH: 5,
-  covHeight: 6,
-  covYOffset: 7,
-  covTop: 8,
-  regionMaxDepth: 9,
-  depthDomainMax: 10,
-  depthDomainMin: 11,
-  coverageSymlogConstant: 12,
-  binSize: 13,
-  interbaseHeight: 14,
-  snpMinFreq: 15,
-  reversed: 16,
-} as const
-
-// Word indices into a Uint32Array view over the uniform buffer.
-export const UNIFORM_OFFSET_U32 = {
-  colorCoverage: 18,
-  colorBaseA: 19,
-  colorBaseC: 20,
-  colorBaseG: 21,
-  colorBaseT: 22,
-  colorBaseN: 23,
-  colorInsertionIndicator: 24,
-  colorSoftclipIndicator: 25,
-  colorHardclipIndicator: 26,
-} as const
-
-// Word indices into a Int32Array view over the uniform buffer.
-export const UNIFORM_OFFSET_I32 = {
-  coverageScaleType: 17,
-} as const
-
-
-export interface Uniforms {
-  bpHi: number
-  bpLo: number
-  bpLen: number
-  hpZero: number
-  canvasW: number
-  canvasH: number
-  covHeight: number
-  covYOffset: number
-  covTop: number
-  regionMaxDepth: number
-  depthDomainMax: number
-  depthDomainMin: number
-  coverageSymlogConstant: number
-  binSize: number
-  interbaseHeight: number
-  snpMinFreq: number
-  reversed: number
-  coverageScaleType: number
-  colorCoverage: number
-  colorBaseA: number
-  colorBaseC: number
-  colorBaseG: number
-  colorBaseT: number
-  colorBaseN: number
-  colorInsertionIndicator: number
-  colorSoftclipIndicator: number
-  colorHardclipIndicator: number
-}
-
-export function writeUniforms(buf: ArrayBuffer, uniforms: Uniforms) {
-  const f32 = new Float32Array(buf)
-  const u32 = new Uint32Array(buf)
-  const i32 = new Int32Array(buf)
-  f32[0] = uniforms.bpHi
-  f32[1] = uniforms.bpLo
-  f32[2] = uniforms.bpLen
-  f32[3] = uniforms.hpZero
-  f32[4] = uniforms.canvasW
-  f32[5] = uniforms.canvasH
-  f32[6] = uniforms.covHeight
-  f32[7] = uniforms.covYOffset
-  f32[8] = uniforms.covTop
-  f32[9] = uniforms.regionMaxDepth
-  f32[10] = uniforms.depthDomainMax
-  f32[11] = uniforms.depthDomainMin
-  f32[12] = uniforms.coverageSymlogConstant
-  f32[13] = uniforms.binSize
-  f32[14] = uniforms.interbaseHeight
-  f32[15] = uniforms.snpMinFreq
-  f32[16] = uniforms.reversed
-  i32[17] = uniforms.coverageScaleType
-  u32[18] = uniforms.colorCoverage
-  u32[19] = uniforms.colorBaseA
-  u32[20] = uniforms.colorBaseC
-  u32[21] = uniforms.colorBaseG
-  u32[22] = uniforms.colorBaseT
-  u32[23] = uniforms.colorBaseN
-  u32[24] = uniforms.colorInsertionIndicator
-  u32[25] = uniforms.colorSoftclipIndicator
-  u32[26] = uniforms.colorHardclipIndicator
-}
-
-export const INSTANCE_STRIDE_BYTES = 8
-export const INSTANCE_STRIDE_WORDS = 2
-
-// Word indices into a Float32Array view over the instance buffer.
-export const INSTANCE_OFFSET_F32 = {
-  colorType: 1,
-} as const
-
-// Word indices into a Uint32Array view over the instance buffer.
-export const INSTANCE_OFFSET_U32 = {
-  position: 0,
-} as const
-
-export const VERTEX_ATTRIBUTES: readonly VertexAttributeLayout[] = [
-  { name: 'a_position', components: 1, type: 'uint', offsetBytes: 0, integer: true },
-  { name: 'a_colorType', components: 1, type: 'float', offsetBytes: 4, integer: false },
-]
-
-export interface InstanceArrays {
-  position: ArrayLike<number>
-  colorType: ArrayLike<number>
-}
-
-export function packInstances(
-  arrays: InstanceArrays,
-  numInstances: number,
-  buf: ArrayBuffer = new ArrayBuffer(numInstances * INSTANCE_STRIDE_BYTES),
-) {
-  const f32 = new Float32Array(buf)
-  const u32 = new Uint32Array(buf)
-  const { position, colorType } = arrays
-  for (let i = 0; i < numInstances; i++) {
-    const o = i * INSTANCE_STRIDE_WORDS
-    u32[o + 0] = position[i]!
-    f32[o + 1] = colorType[i]!
-  }
-  return buf
-}
-
-// Instance `i`'s `position`.
-export function getInstancePosition(u32: Uint32Array, i: number) {
-  return u32[i * INSTANCE_STRIDE_WORDS]!
-}
-
-export function setInstancePosition(u32: Uint32Array, i: number, v: number) {
-  u32[i * INSTANCE_STRIDE_WORDS] = v
-}
-
-// Instance `i`'s `colorType`.
-export function getInstanceColorType(f32: Float32Array, i: number) {
-  return f32[i * INSTANCE_STRIDE_WORDS + 1]!
-}
-
-export function setInstanceColorType(f32: Float32Array, i: number, v: number) {
-  f32[i * INSTANCE_STRIDE_WORDS + 1] = v
-}

package/src/shaders/coverageIndicator.slang

@@ -1,61 +0,0 @@
-// Indicator triangles: a single 7x4.5px triangle per instance pinned to the top
-// of the coverage band, marking an insertion / softclip / hardclip site whose
-// histogram bar hangs below it. Barycentric coords in the fragment shader give
-// cheap diagonal-edge anti-aliasing. See coverageBand.slang.
-//! targets: wgsl, glsl
-//! layout-out: packages/alignments-core/src/indicatorLayout.generated.ts
-
-import coverageBand;
-import hpmath;
-
-public static const uint VERTS_PER_INSTANCE = 3u;
-// TRIANGLE_HW / TRIANGLE_H come from coverageBand — coverageInterbase hangs its
-// bars below this triangle and must use the same height.
-
-[[vk::binding(1, 0)]] ConstantBuffer<CoverageBandUniforms> u;
-
-struct Instance {
-  uint  position  : ATTR0;
-  float colorType : ATTR1;  // 1=insertion 2=softclip 3=hardclip
-};
-
-struct VsOut {
-  float4 position : SV_Position;
-  float4 color    : COLOR0;
-  float3 bary     : COLOR1;
-};
-
-[shader("vertex")]
-VsOut vs_main(Instance inst, uint vid : SV_VertexID) {
-  VsOut o;
-  uint v = vid % 3u;
-
-  float cx = covBpToClipX(inst.position, u);
-  float tw = pxToClipLen(TRIANGLE_HW * 2.0, u.canvasW);  // full triangle width
-  float th = pxToClipLen(TRIANGLE_H, u.canvasH);
-
-  float top = covAreaTop(u);
-  float sx, sy;
-  if (v == 0u)      { sx = cx - tw * 0.5; sy = top;      o.bary = float3(1.0, 0.0, 0.0); }
-  else if (v == 1u) { sx = cx + tw * 0.5; sy = top;      o.bary = float3(0.0, 1.0, 0.0); }
-  else              { sx = cx;            sy = top - th; o.bary = float3(0.0, 0.0, 1.0); }
-
-  o.position = float4(covFlipX(sx, u), sy, 0.0, 1.0);
-  o.color = float4(covClipKindColor(inst.colorType, u), 1.0);
-  return o;
-}
-
-// Barycentric -> approximate px distance from each diagonal edge, for the
-// smoothstep fade below. NOT the triangle's altitude despite the round number:
-// for the 7x4.5 triangle that is 7*4.5/hypot(3.5, 4.5) = 5.53px, so this scale
-// spreads the fade over ~1.5px rather than 1px. Left as-is — it is a softness
-// knob, and tightening it visibly sharpens every indicator.
-static const float EDGE_FADE_SCALE_PX = 3.7;
-
-[shader("fragment")]
-float4 fs_main(VsOut fragIn) : SV_Target {
-  float dLeft = fragIn.bary.y * EDGE_FADE_SCALE_PX;
-  float dRight = fragIn.bary.x * EDGE_FADE_SCALE_PX;
-  float aa = smoothstep(0.0, 1.0, min(dLeft, dRight));
-  return float4(fragIn.color.rgb, fragIn.color.a * aa);
-}

package/src/shaders/coverageIndicator.wgsl.generated.ts

@@ -1,4 +0,0 @@
-// AUTO-GENERATED by packages/shader-tools/src/shader-codegen from coverageIndicator.slang.
-// Do not edit. Run `pnpm gen:shaders` to regenerate.
-
-export const WGSL_SOURCE = "struct CoverageBandUniforms_std140_0\n{\n    @align(16) bpHi_0 : f32,\n    @align(4) bpLo_0 : f32,\n    @align(8) bpLen_0 : f32,\n    @align(4) hpZero_0 : f32,\n    @align(16) canvasW_0 : f32,\n    @align(4) canvasH_0 : f32,\n    @align(8) covHeight_0 : f32,\n    @align(4) covYOffset_0 : f32,\n    @align(16) covTop_0 : f32,\n    @align(4) regionMaxDepth_0 : f32,\n    @align(8) depthDomainMax_0 : f32,\n    @align(4) depthDomainMin_0 : f32,\n    @align(16) coverageSymlogConstant_0 : f32,\n    @align(4) binSize_0 : f32,\n    @align(8) interbaseHeight_0 : f32,\n    @align(4) snpMinFreq_0 : f32,\n    @align(16) reversed_0 : f32,\n    @align(4) coverageScaleType_0 : i32,\n    @align(8) colorCoverage_0 : u32,\n    @align(4) colorBaseA_0 : u32,\n    @align(16) colorBaseC_0 : u32,\n    @align(4) colorBaseG_0 : u32,\n    @align(8) colorBaseT_0 : u32,\n    @align(4) colorBaseN_0 : u32,\n    @align(16) colorInsertionIndicator_0 : u32,\n    @align(4) colorSoftclipIndicator_0 : u32,\n    @align(8) colorHardclipIndicator_0 : u32,\n};\n\n@binding(1) @group(0) var<uniform> u_0 : CoverageBandUniforms_std140_0;\nfn hpSplitUint_0( value_0 : u32) -> vec2<f32>\n{\n    var lo_0 : u32 = (value_0 & (u32(4095)));\n    return vec2<f32>(f32(value_0 - lo_0), f32(lo_0));\n}\n\nfn hpToClipX_0( splitPos_0 : vec2<f32>,  bpRange_0 : vec3<f32>,  hpZero_1 : f32) -> f32\n{\n    var floorBp_0 : f32 = -3.00000000549775576e+38f + hpZero_1;\n    var step_0 : f32 = 2.0f / bpRange_0.z;\n    return dot(vec3<f32>(-1.0f, max(splitPos_0.x - bpRange_0.x, floorBp_0), max(splitPos_0.y - bpRange_0.y, floorBp_0)), vec3<f32>(1.0f, step_0, step_0));\n}\n\nfn covBpToClipX_0( bp_0 : u32,  u_1 : ptr<function, CoverageBandUniforms_std140_0>) -> f32\n{\n    return hpToClipX_0(hpSplitUint_0(bp_0), vec3<f32>((*u_1).bpHi_0, (*u_1).bpLo_0, (*u_1).bpLen_0), (*u_1).hpZero_0);\n}\n\nfn pxToClipLen_0( px_0 : f32,  size_0 : f32) -> f32\n{\n    return px_0 * 2.0f / size_0;\n}\n\nfn yPxToClipY_0( yPx_0 : f32,  canvasHeight_0 : f32) -> f32\n{\n    return 1.0f - yPx_0 / canvasHeight_0 * 2.0f;\n}\n\nfn covAreaTop_0( u_2 : ptr<function, CoverageBandUniforms_std140_0>) -> f32\n{\n    return yPxToClipY_0((*u_2).covTop_0, (*u_2).canvasH_0);\n}\n\nfn covFlipX_0( x_0 : f32,  u_3 : ptr<function, CoverageBandUniforms_std140_0>) -> f32\n{\n    return mix(x_0, - x_0, (*u_3).reversed_0);\n}\n\nfn unpackRGBA_0( c_0 : u32) -> vec4<f32>\n{\n    return vec4<f32>(f32((((c_0 >> (u32(0)))) & (u32(255)))), f32((((c_0 >> (u32(8)))) & (u32(255)))), f32((((c_0 >> (u32(16)))) & (u32(255)))), f32((((c_0 >> (u32(24)))) & (u32(255))))) / vec4<f32>(255.0f);\n}\n\nfn covClipKindColor_0( ct_0 : f32,  u_4 : ptr<function, CoverageBandUniforms_std140_0>) -> vec3<f32>\n{\n    var ci_0 : i32 = i32(ct_0);\n    if(ci_0 == i32(2))\n    {\n        return unpackRGBA_0((*u_4).colorSoftclipIndicator_0).xyz;\n    }\n    if(ci_0 == i32(3))\n    {\n        return unpackRGBA_0((*u_4).colorHardclipIndicator_0).xyz;\n    }\n    return unpackRGBA_0((*u_4).colorInsertionIndicator_0).xyz;\n}\n\nstruct VsOut_0\n{\n    @builtin(position) position_0 : vec4<f32>,\n    @location(0) color_0 : vec4<f32>,\n    @location(1) bary_0 : vec3<f32>,\n};\n\nstruct vertexInput_0\n{\n    @location(0) position_1 : u32,\n    @location(1) colorType_0 : f32,\n};\n\n@vertex\nfn vs_main( _S1 : vertexInput_0, @builtin(vertex_index) vid_0 : u32) -> VsOut_0\n{\n    var o_0 : VsOut_0;\n    var v_0 : u32 = vid_0 % u32(3);\n    var _S2 : CoverageBandUniforms_std140_0 = u_0;\n    var _S3 : f32 = covBpToClipX_0(_S1.position_1, &(_S2));\n    var tw_0 : f32 = pxToClipLen_0(7.0f, u_0.canvasW_0);\n    var th_0 : f32 = pxToClipLen_0(4.5f, u_0.canvasH_0);\n    var _S4 : f32 = covAreaTop_0(&(_S2));\n    var sx_0 : f32;\n    var sy_0 : f32;\n    if(v_0 == u32(0))\n    {\n        var _S5 : f32 = _S3 - tw_0 * 0.5f;\n        o_0.bary_0 = vec3<f32>(1.0f, 0.0f, 0.0f);\n        sx_0 = _S5;\n        sy_0 = _S4;\n    }\n    else\n    {\n        if(v_0 == u32(1))\n        {\n            var _S6 : f32 = _S3 + tw_0 * 0.5f;\n            o_0.bary_0 = vec3<f32>(0.0f, 1.0f, 0.0f);\n            sx_0 = _S6;\n            sy_0 = _S4;\n        }\n        else\n        {\n            var _S7 : f32 = _S4 - th_0;\n            o_0.bary_0 = vec3<f32>(0.0f, 0.0f, 1.0f);\n            sx_0 = _S3;\n            sy_0 = _S7;\n        }\n    }\n    var _S8 : f32 = covFlipX_0(sx_0, &(_S2));\n    o_0.position_0 = vec4<f32>(_S8, sy_0, 0.0f, 1.0f);\n    var _S9 : vec3<f32> = covClipKindColor_0(_S1.colorType_0, &(_S2));\n    o_0.color_0 = vec4<f32>(_S9, 1.0f);\n    return o_0;\n}\n\nstruct pixelOutput_0\n{\n    @location(0) output_0 : vec4<f32>,\n};\n\nstruct pixelInput_0\n{\n    @location(0) color_1 : vec4<f32>,\n    @location(1) bary_1 : vec3<f32>,\n};\n\n@fragment\nfn fs_main( _S10 : pixelInput_0, @builtin(position) position_2 : vec4<f32>) -> pixelOutput_0\n{\n    var _S11 : pixelOutput_0 = pixelOutput_0( vec4<f32>(_S10.color_1.xyz, _S10.color_1.w * smoothstep(0.0f, 1.0f, min(_S10.bary_1.y * 3.70000004768371582f, _S10.bary_1.x * 3.70000004768371582f))) );\n    return _S11;\n}\n\n"