@jbrowse/react-linear-genome-view2 3.7.0 → 4.0.0

package/esm/JBrowseLinearGenomeView/JBrowseLinearGenomeView.d.ts

@@ -1,4 +1,4 @@
-import type { ViewModel } from '../createModel/createModel';
+import type { ViewModel } from '../createModel/createModel.ts';
 declare const JBrowseLinearGenomeView: ({ viewState, }: {
     viewState: ViewModel;
 }) => import("react/jsx-runtime").JSX.Element;

package/esm/JBrowseLinearGenomeView/JBrowseLinearGenomeView.js

@@ -3,10 +3,10 @@ import { Suspense } from 'react';
 import { readConfObject } from '@jbrowse/core/configuration';
 import { LoadingEllipses, createJBrowseTheme } from '@jbrowse/core/ui';
 import { EmbeddedViewContainer, ModalWidget } from '@jbrowse/embedded-core';
+import { getEnv } from '@jbrowse/mobx-state-tree';
 import { ThemeProvider } from '@mui/material';
 import { observer } from 'mobx-react';
-import { getEnv } from 'mobx-state-tree';
-const JBrowseLinearGenomeView = observer(function ({ viewState, }) {
+const JBrowseLinearGenomeView = observer(function JBrowseLinearGenomeView({ viewState, }) {
     const { session } = viewState;
     const { view } = session;
     const { pluginManager } = getEnv(session);

package/esm/JBrowseLinearGenomeView/index.d.ts

@@ -1 +1 @@
-export { default } from './JBrowseLinearGenomeView';
+export { default } from './JBrowseLinearGenomeView.tsx';

package/esm/JBrowseLinearGenomeView/index.js

@@ -1 +1 @@
-export { default } from './JBrowseLinearGenomeView';
+export { default } from "./JBrowseLinearGenomeView.js";

package/esm/corePlugins.d.ts

@@ -1,3 +1,3 @@
-import Arc from '@jbrowse/plugin-arc';
-declare const corePlugins: (typeof Arc)[];
+import Config from '@jbrowse/plugin-config';
+declare const corePlugins: (typeof Config)[];
 export default corePlugins;

package/esm/corePlugins.js

@@ -2,6 +2,7 @@ import Alignments from '@jbrowse/plugin-alignments';
 import Arc from '@jbrowse/plugin-arc';
 import Authentication from '@jbrowse/plugin-authentication';
 import BED from '@jbrowse/plugin-bed';
+import Canvas from '@jbrowse/plugin-canvas';
 import Config from '@jbrowse/plugin-config';
 import DataManagement from '@jbrowse/plugin-data-management';
 import GCContent from '@jbrowse/plugin-gccontent';
@@ -9,12 +10,11 @@ import GFF3 from '@jbrowse/plugin-gff3';
 import LegacyJBrowse from '@jbrowse/plugin-legacy-jbrowse';
 import LinearGenomeView from '@jbrowse/plugin-linear-genome-view';
 import Sequence from '@jbrowse/plugin-sequence';
-import SVG from '@jbrowse/plugin-svg';
 import Trix from '@jbrowse/plugin-trix';
 import Variants from '@jbrowse/plugin-variants';
 import Wiggle from '@jbrowse/plugin-wiggle';
 const corePlugins = [
-    SVG,
+    Canvas,
     Alignments,
     Authentication,
     BED,

package/esm/createModel/createConfigModel.d.ts

@@ -1,21 +1,21 @@
 import type PluginManager from '@jbrowse/core/PluginManager';
-import type { IAnyType } from 'mobx-state-tree';
-export default function createConfigModel(pluginManager: PluginManager, assemblyConfigSchemasType: IAnyType): import("mobx-state-tree").IModelType<{
-    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        rpc: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+import type { IAnyType } from '@jbrowse/mobx-state-tree';
+export default function createConfigModel(pluginManager: PluginManager, assemblyConfigSchemasType: IAnyType): import("@jbrowse/mobx-state-tree").IModelType<{
+    configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+        rpc: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
             defaultDriver: {
                 type: string;
                 description: string;
                 defaultValue: string;
             };
-            drivers: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IMapType<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+            drivers: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("@jbrowse/mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
+        }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
         highResolutionScaling: {
             type: string;
             defaultValue: number;
         };
-        hierarchical: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            sort: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        hierarchical: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
+            sort: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
                 trackNames: {
                     type: string;
                     defaultValue: boolean;
@@ -24,8 +24,8 @@ export default function createConfigModel(pluginManager: PluginManager, assembly
                     type: string;
                     defaultValue: boolean;
                 };
-            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-            defaultCollapsed: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+            }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+            defaultCollapsed: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
                 categoryNames: {
                     type: string;
                     defaultValue: never[];
@@ -38,9 +38,9 @@ export default function createConfigModel(pluginManager: PluginManager, assembly
                     type: string;
                     defaultValue: boolean;
                 };
-            }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+            }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+        }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+        formatDetails: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
             feature: {
                 type: string;
                 description: string;
@@ -63,8 +63,8 @@ export default function createConfigModel(pluginManager: PluginManager, assembly
                 defaultValue: number;
                 description: string;
             };
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+        formatAbout: import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaType<{
             config: {
                 type: string;
                 description: string;
@@ -75,20 +75,20 @@ export default function createConfigModel(pluginManager: PluginManager, assembly
                 type: string;
                 defaultValue: boolean;
             };
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+        }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
         theme: {
             type: string;
             defaultValue: {};
         };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    }, import("node_modules/@jbrowse/core/src/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
     assembly: IAnyType;
-    tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-    internetAccounts: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-    connections: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-    aggregateTextSearchAdapters: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-    plugins: import("mobx-state-tree").IType<any, any, any>;
+    tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
+    internetAccounts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
+    connections: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
+    aggregateTextSearchAdapters: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
+    plugins: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
 }, {
     readonly assemblies: any[];
     readonly assemblyName: string;
     readonly rpcManager: any;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;

package/esm/createModel/createConfigModel.js

@@ -1,7 +1,7 @@
 import { ConfigurationSchema, readConfObject, } from '@jbrowse/core/configuration';
 import RpcManager from '@jbrowse/core/rpc/RpcManager';
+import { getParent, types } from '@jbrowse/mobx-state-tree';
 import { FormatAboutConfigSchemaFactory, FormatDetailsConfigSchemaFactory, HierarchicalConfigSchemaFactory, } from '@jbrowse/product-core';
-import { getParent, types } from 'mobx-state-tree';
 export default function createConfigModel(pluginManager, assemblyConfigSchemasType) {
     return types
         .model('Configuration', {