@jbrowse/react-linear-genome-view2 3.6.5 → 4.0.0

package/dist/createViewState.js

@@ -1,75 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = createViewState;
-const util_1 = require("@jbrowse/core/util");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const createModel_1 = __importDefault(require("./createModel"));
-function createViewState(opts) {
-    const { assembly, tracks, internetAccounts, configuration, aggregateTextSearchAdapters, plugins = [], location, highlight, onChange, disableAddTracks = false, makeWorkerInstance, defaultSession, } = opts;
-    const { model, pluginManager } = (0, createModel_1.default)(plugins, makeWorkerInstance);
-    const stateTree = model.create({
-        config: {
-            configuration,
-            assembly,
-            tracks,
-            internetAccounts,
-            aggregateTextSearchAdapters,
-        },
-        disableAddTracks,
-        session: defaultSession !== null && defaultSession !== void 0 ? defaultSession : {
-            name: 'this session',
-            view: {
-                id: 'linearGenomeView',
-                type: 'LinearGenomeView',
-            },
-        },
-    }, { pluginManager });
-    for (const account of stateTree.config.internetAccounts) {
-        const internetAccountType = pluginManager.getInternetAccountType(account.type);
-        if (!internetAccountType) {
-            throw new Error(`unknown internet account type ${account.type}`);
-        }
-        stateTree.addInternetAccount({
-            type: account.type,
-            configuration: account,
-        });
-    }
-    pluginManager.setRootModel(stateTree);
-    pluginManager.configure();
-    if (location) {
-        ;
-        (async () => {
-            const { session } = stateTree;
-            const { isValidRefName } = session.assemblyManager;
-            try {
-                await session.view.navToLocString(typeof location === 'string' ? location : (0, util_1.assembleLocString)(location), assembly.name);
-                if (highlight) {
-                    for (const h of highlight) {
-                        if (h) {
-                            const p = (0, util_1.parseLocString)(h, refName => isValidRefName(refName, assembly.name));
-                            const { start, end } = p;
-                            if (start !== undefined && end !== undefined) {
-                                session.view.addToHighlights({
-                                    ...p,
-                                    start,
-                                    end,
-                                    assemblyName: assembly,
-                                });
-                            }
-                        }
-                    }
-                }
-            }
-            catch (e) {
-                session.notifyError(`${e}`, e);
-            }
-        })();
-    }
-    if (onChange) {
-        (0, mobx_state_tree_1.onPatch)(stateTree, onChange);
-    }
-    return stateTree;
-}

package/dist/index.d.ts

@@ -1,5 +0,0 @@
-export { default as JBrowseLinearGenomeView } from './JBrowseLinearGenomeView';
-export { default as createModel } from './createModel';
-export { default as createViewState } from './createViewState';
-export { default as loadPlugins } from './loadPlugins';
-export type { ViewModel } from './createModel/createModel';

package/dist/index.js

@@ -1,14 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.loadPlugins = exports.createViewState = exports.createModel = exports.JBrowseLinearGenomeView = void 0;
-var JBrowseLinearGenomeView_1 = require("./JBrowseLinearGenomeView");
-Object.defineProperty(exports, "JBrowseLinearGenomeView", { enumerable: true, get: function () { return __importDefault(JBrowseLinearGenomeView_1).default; } });
-var createModel_1 = require("./createModel");
-Object.defineProperty(exports, "createModel", { enumerable: true, get: function () { return __importDefault(createModel_1).default; } });
-var createViewState_1 = require("./createViewState");
-Object.defineProperty(exports, "createViewState", { enumerable: true, get: function () { return __importDefault(createViewState_1).default; } });
-var loadPlugins_1 = require("./loadPlugins");
-Object.defineProperty(exports, "loadPlugins", { enumerable: true, get: function () { return __importDefault(loadPlugins_1).default; } });

package/dist/loadPlugins.d.ts

@@ -1,13 +0,0 @@
-import type { LoadedPlugin } from '@jbrowse/core/PluginLoader';
-interface PluginDefinition {
-    name: string;
-    url: string;
-}
-export default function loadPlugins(pluginDefinitions: PluginDefinition[], args?: {
-    fetchESM?: (url: string) => Promise<LoadedPlugin>;
-    baseUrl?: string;
-}): Promise<{
-    plugin: import("@jbrowse/core/Plugin").PluginConstructor;
-    definition: import("@jbrowse/core/PluginLoader").PluginDefinition;
-}[]>;
-export {};

package/dist/loadPlugins.js

@@ -1,12 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = loadPlugins;
-const PluginLoader_1 = __importDefault(require("@jbrowse/core/PluginLoader"));
-async function loadPlugins(pluginDefinitions, args) {
-    const pluginLoader = new PluginLoader_1.default(pluginDefinitions, args);
-    pluginLoader.installGlobalReExports(window);
-    return pluginLoader.load(args === null || args === void 0 ? void 0 : args.baseUrl);
-}