@jbrowse/react-circular-genome-view2 3.7.0 → 4.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/esm/JBrowseCircularGenomeView/JBrowseCircularGenomeView.d.ts +1 -1
- package/esm/JBrowseCircularGenomeView/JBrowseCircularGenomeView.js +1 -1
- package/esm/JBrowseCircularGenomeView/index.d.ts +1 -1
- package/esm/JBrowseCircularGenomeView/index.js +1 -1
- package/esm/corePlugins.d.ts +2 -2
- package/esm/createModel/createConfigModel.d.ts +25 -29
- package/esm/createModel/createConfigModel.js +1 -1
- package/esm/createModel/createModel.d.ts +517 -680
- package/esm/createModel/createModel.js +5 -5
- package/esm/createModel/createSessionModel.d.ts +247 -327
- package/esm/createModel/createSessionModel.js +5 -4
- package/esm/createModel/index.d.ts +3 -3
- package/esm/createModel/index.js +3 -3
- package/esm/createViewState.d.ts +1305 -1757
- package/esm/createViewState.js +3 -4
- package/esm/index.d.ts +4 -4
- package/esm/index.js +4 -4
- package/esm/loadPlugins.js +1 -1
- package/esm/types.d.ts +1 -1
- package/esm/version.d.ts +1 -1
- package/esm/version.js +1 -1
- package/esm/webpack.d.ts +4 -4
- package/esm/webpack.js +4 -4
- package/package.json +38 -40
- package/dist/JBrowseCircularGenomeView/JBrowseCircularGenomeView.d.ts +0 -5
- package/dist/JBrowseCircularGenomeView/JBrowseCircularGenomeView.js +0 -23
- package/dist/JBrowseCircularGenomeView/index.d.ts +0 -1
- package/dist/JBrowseCircularGenomeView/index.js +0 -8
- package/dist/corePlugins.d.ts +0 -3
- package/dist/corePlugins.js +0 -22
- package/dist/createModel/AboutDialog.d.ts +0 -1
- package/dist/createModel/AboutDialog.js +0 -5
- package/dist/createModel/createConfigModel.d.ts +0 -104
- package/dist/createModel/createConfigModel.js +0 -43
- package/dist/createModel/createModel.d.ts +0 -4588
- package/dist/createModel/createModel.js +0 -117
- package/dist/createModel/createSessionModel.d.ts +0 -1870
- package/dist/createModel/createSessionModel.js +0 -115
- package/dist/createModel/index.d.ts +0 -3
- package/dist/createModel/index.js +0 -12
- package/dist/createViewState.d.ts +0 -11770
- package/dist/createViewState.js +0 -64
- package/dist/index.d.ts +0 -4
- package/dist/index.js +0 -14
- package/dist/loadPlugins.d.ts +0 -13
- package/dist/loadPlugins.js +0 -12
- package/dist/react-circular-genome-view.umd.production.min.js +0 -229
- package/dist/react-circular-genome-view.umd.production.min.js.LICENSE.txt +0 -145
- package/dist/react-circular-genome-view.umd.production.min.js.map +0 -1
- package/dist/types.d.ts +0 -5
- package/dist/types.js +0 -2
- package/dist/version.d.ts +0 -1
- package/dist/version.js +0 -4
- package/dist/webpack.d.ts +0 -7
- package/dist/webpack.js +0 -53
|
@@ -3,24 +3,24 @@ import TextSearchManager from '@jbrowse/core/TextSearch/TextSearchManager';
|
|
|
3
3
|
import RpcManager from '@jbrowse/core/rpc/RpcManager';
|
|
4
4
|
import type { PluginConstructor } from '@jbrowse/core/Plugin';
|
|
5
5
|
import type { UriLocation } from '@jbrowse/core/util';
|
|
6
|
-
import type { Instance, SnapshotIn } from 'mobx-state-tree';
|
|
6
|
+
import type { Instance, SnapshotIn } from '@jbrowse/mobx-state-tree';
|
|
7
7
|
export default function createModel(runtimePlugins: PluginConstructor[], makeWorkerInstance?: () => Worker): {
|
|
8
|
-
model: import("mobx-state-tree").IModelType<{
|
|
9
|
-
config: import("mobx-state-tree").IModelType<{
|
|
10
|
-
configuration: import("
|
|
11
|
-
rpc: import("
|
|
8
|
+
model: import("@jbrowse/mobx-state-tree").IModelType<{
|
|
9
|
+
config: import("@jbrowse/mobx-state-tree").IModelType<{
|
|
10
|
+
configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
11
|
+
rpc: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
12
12
|
defaultDriver: {
|
|
13
13
|
type: string;
|
|
14
14
|
description: string;
|
|
15
15
|
defaultValue: string;
|
|
16
16
|
};
|
|
17
|
-
drivers: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IMapType<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
|
|
18
|
-
}, import("
|
|
17
|
+
drivers: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("@jbrowse/mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
|
|
18
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
19
19
|
highResolutionScaling: {
|
|
20
20
|
type: string;
|
|
21
21
|
defaultValue: number;
|
|
22
22
|
};
|
|
23
|
-
formatDetails: import("
|
|
23
|
+
formatDetails: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
24
24
|
feature: {
|
|
25
25
|
type: string;
|
|
26
26
|
description: string;
|
|
@@ -43,8 +43,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
43
43
|
defaultValue: number;
|
|
44
44
|
description: string;
|
|
45
45
|
};
|
|
46
|
-
}, import("
|
|
47
|
-
formatAbout: import("
|
|
46
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
47
|
+
formatAbout: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
48
48
|
config: {
|
|
49
49
|
type: string;
|
|
50
50
|
description: string;
|
|
@@ -55,9 +55,9 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
55
55
|
type: string;
|
|
56
56
|
defaultValue: boolean;
|
|
57
57
|
};
|
|
58
|
-
}, import("
|
|
59
|
-
hierarchical: import("
|
|
60
|
-
sort: import("
|
|
58
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
59
|
+
hierarchical: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
60
|
+
sort: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
61
61
|
trackNames: {
|
|
62
62
|
type: string;
|
|
63
63
|
defaultValue: boolean;
|
|
@@ -66,8 +66,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
66
66
|
type: string;
|
|
67
67
|
defaultValue: boolean;
|
|
68
68
|
};
|
|
69
|
-
}, import("
|
|
70
|
-
defaultCollapsed: import("
|
|
69
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
70
|
+
defaultCollapsed: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
71
71
|
categoryNames: {
|
|
72
72
|
type: string;
|
|
73
73
|
defaultValue: never[];
|
|
@@ -80,91 +80,44 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
80
80
|
type: string;
|
|
81
81
|
defaultValue: boolean;
|
|
82
82
|
};
|
|
83
|
-
}, import("
|
|
84
|
-
}, import("
|
|
83
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
84
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
85
85
|
theme: {
|
|
86
86
|
type: string;
|
|
87
87
|
defaultValue: {};
|
|
88
88
|
};
|
|
89
|
-
}, import("
|
|
89
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
90
90
|
assembly: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
91
|
-
tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
92
|
-
internetAccounts: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
93
|
-
connections: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
94
|
-
aggregateTextSearchAdapters: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
95
|
-
plugins: import("mobx-state-tree").IType<any, any, any>;
|
|
91
|
+
tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
|
|
92
|
+
internetAccounts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
|
|
93
|
+
connections: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
|
|
94
|
+
aggregateTextSearchAdapters: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
|
|
95
|
+
plugins: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
|
|
96
96
|
}, {
|
|
97
97
|
readonly assemblies: ({
|
|
98
98
|
[x: string]: any;
|
|
99
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
99
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
100
100
|
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
101
101
|
[x: string]: any;
|
|
102
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject &
|
|
103
|
-
|
|
104
|
-
[x: string]: any;
|
|
105
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
106
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
107
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
102
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
103
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
108
104
|
readonly assemblyName: string;
|
|
109
105
|
readonly rpcManager: any;
|
|
110
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
111
|
-
session: import("mobx-state-tree").IModelType<{
|
|
112
|
-
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
113
|
-
name: import("mobx-state-tree").ISimpleType<string>;
|
|
114
|
-
margin: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
106
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
|
|
107
|
+
session: import("@jbrowse/mobx-state-tree").IModelType<{
|
|
108
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
109
|
+
name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
110
|
+
margin: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
115
111
|
} & {
|
|
116
|
-
drawerPosition: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
117
|
-
drawerWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
118
|
-
widgets: import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyType>;
|
|
119
|
-
activeWidgets: import("mobx-state-tree").IMapType<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>>;
|
|
120
|
-
minimized: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
112
|
+
drawerPosition: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
113
|
+
drawerWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
114
|
+
widgets: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyType>;
|
|
115
|
+
activeWidgets: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>>;
|
|
116
|
+
minimized: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
121
117
|
} & {
|
|
122
|
-
connectionInstances: import("mobx-state-tree").IArrayType<import("mobx-state-tree").
|
|
123
|
-
name: import("mobx-state-tree").ISimpleType<string>;
|
|
124
|
-
tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
125
|
-
configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
126
|
-
name: {
|
|
127
|
-
type: string;
|
|
128
|
-
defaultValue: string;
|
|
129
|
-
description: string;
|
|
130
|
-
};
|
|
131
|
-
assemblyNames: {
|
|
132
|
-
type: string;
|
|
133
|
-
defaultValue: never[];
|
|
134
|
-
description: string;
|
|
135
|
-
};
|
|
136
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
|
|
137
|
-
}, {
|
|
138
|
-
connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
|
|
139
|
-
} & {
|
|
140
|
-
afterAttach(): void;
|
|
141
|
-
addTrackConf(trackConf: Record<string, unknown> | ({
|
|
142
|
-
[x: string]: any;
|
|
143
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
144
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
145
|
-
[x: string]: any;
|
|
146
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
147
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
148
|
-
[x: string]: any;
|
|
149
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
150
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
151
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)): any;
|
|
152
|
-
addTrackConfs(trackConfs: (Record<string, unknown> | ({
|
|
153
|
-
[x: string]: any;
|
|
154
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
155
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
156
|
-
[x: string]: any;
|
|
157
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
158
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
159
|
-
[x: string]: any;
|
|
160
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
161
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
162
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>))[]): void;
|
|
163
|
-
setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): void;
|
|
164
|
-
clear(): void;
|
|
165
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
118
|
+
connectionInstances: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
|
|
166
119
|
} & {
|
|
167
|
-
view: import("mobx-state-tree").IAnyModelType;
|
|
120
|
+
view: import("@jbrowse/mobx-state-tree").IAnyModelType;
|
|
168
121
|
}, {
|
|
169
122
|
selection: unknown;
|
|
170
123
|
hovered: unknown;
|
|
@@ -174,8 +127,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
174
127
|
session: any;
|
|
175
128
|
sessionPath: string;
|
|
176
129
|
assemblyManager: {
|
|
177
|
-
assemblies: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
|
|
178
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
130
|
+
assemblies: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
131
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
179
132
|
}, {
|
|
180
133
|
error: unknown;
|
|
181
134
|
loadingP: Promise<void> | undefined;
|
|
@@ -183,6 +136,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
183
136
|
refNameAliases: {
|
|
184
137
|
[x: string]: string;
|
|
185
138
|
} | undefined;
|
|
139
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
186
140
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
187
141
|
} & {
|
|
188
142
|
getConf(arg: string): any;
|
|
@@ -206,9 +160,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
206
160
|
readonly refNames: string[] | undefined;
|
|
207
161
|
} & {
|
|
208
162
|
getCanonicalRefName(refName: string): string | undefined;
|
|
209
|
-
getCanonicalRefName2(
|
|
163
|
+
getCanonicalRefName2(refName: string): string;
|
|
210
164
|
getRefNameColor(refName: string): string | undefined;
|
|
211
165
|
isValidRefName(refName: string): boolean;
|
|
166
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
212
167
|
} & {
|
|
213
168
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
214
169
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -223,6 +178,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
223
178
|
[x: string]: string;
|
|
224
179
|
}): void;
|
|
225
180
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
181
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
226
182
|
setLoadingP(p?: Promise<void>): void;
|
|
227
183
|
load(): Promise<void>;
|
|
228
184
|
loadPre(): Promise<void>;
|
|
@@ -241,8 +197,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
241
197
|
[x: string]: string;
|
|
242
198
|
}>;
|
|
243
199
|
afterCreate(): void;
|
|
244
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
245
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
200
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
201
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
246
202
|
}, {
|
|
247
203
|
error: unknown;
|
|
248
204
|
loadingP: Promise<void> | undefined;
|
|
@@ -250,6 +206,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
250
206
|
refNameAliases: {
|
|
251
207
|
[x: string]: string;
|
|
252
208
|
} | undefined;
|
|
209
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
253
210
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
254
211
|
} & {
|
|
255
212
|
getConf(arg: string): any;
|
|
@@ -273,9 +230,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
273
230
|
readonly refNames: string[] | undefined;
|
|
274
231
|
} & {
|
|
275
232
|
getCanonicalRefName(refName: string): string | undefined;
|
|
276
|
-
getCanonicalRefName2(
|
|
233
|
+
getCanonicalRefName2(refName: string): string;
|
|
277
234
|
getRefNameColor(refName: string): string | undefined;
|
|
278
235
|
isValidRefName(refName: string): boolean;
|
|
236
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
279
237
|
} & {
|
|
280
238
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
281
239
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -290,6 +248,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
290
248
|
[x: string]: string;
|
|
291
249
|
}): void;
|
|
292
250
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
251
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
293
252
|
setLoadingP(p?: Promise<void>): void;
|
|
294
253
|
load(): Promise<void>;
|
|
295
254
|
loadPre(): Promise<void>;
|
|
@@ -308,17 +267,18 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
308
267
|
[x: string]: string;
|
|
309
268
|
}>;
|
|
310
269
|
afterCreate(): void;
|
|
311
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
312
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
270
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
|
|
271
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
313
272
|
readonly assemblyNameMap: Record<string, {
|
|
314
273
|
configuration: any;
|
|
315
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
274
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
316
275
|
error: unknown;
|
|
317
276
|
loadingP: Promise<void> | undefined;
|
|
318
277
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
319
278
|
refNameAliases: {
|
|
320
279
|
[x: string]: string;
|
|
321
280
|
} | undefined;
|
|
281
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
322
282
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
323
283
|
} & {
|
|
324
284
|
getConf(arg: string): any;
|
|
@@ -342,9 +302,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
342
302
|
readonly refNames: string[] | undefined;
|
|
343
303
|
} & {
|
|
344
304
|
getCanonicalRefName(refName: string): string | undefined;
|
|
345
|
-
getCanonicalRefName2(
|
|
305
|
+
getCanonicalRefName2(refName: string): string;
|
|
346
306
|
getRefNameColor(refName: string): string | undefined;
|
|
347
307
|
isValidRefName(refName: string): boolean;
|
|
308
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
348
309
|
} & {
|
|
349
310
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
350
311
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -359,6 +320,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
359
320
|
[x: string]: string;
|
|
360
321
|
}): void;
|
|
361
322
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
323
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
362
324
|
setLoadingP(p?: Promise<void>): void;
|
|
363
325
|
load(): Promise<void>;
|
|
364
326
|
loadPre(): Promise<void>;
|
|
@@ -377,8 +339,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
377
339
|
[x: string]: string;
|
|
378
340
|
}>;
|
|
379
341
|
afterCreate(): void;
|
|
380
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
381
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
342
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
343
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
382
344
|
}, {
|
|
383
345
|
error: unknown;
|
|
384
346
|
loadingP: Promise<void> | undefined;
|
|
@@ -386,6 +348,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
386
348
|
refNameAliases: {
|
|
387
349
|
[x: string]: string;
|
|
388
350
|
} | undefined;
|
|
351
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
389
352
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
390
353
|
} & {
|
|
391
354
|
getConf(arg: string): any;
|
|
@@ -409,9 +372,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
409
372
|
readonly refNames: string[] | undefined;
|
|
410
373
|
} & {
|
|
411
374
|
getCanonicalRefName(refName: string): string | undefined;
|
|
412
|
-
getCanonicalRefName2(
|
|
375
|
+
getCanonicalRefName2(refName: string): string;
|
|
413
376
|
getRefNameColor(refName: string): string | undefined;
|
|
414
377
|
isValidRefName(refName: string): boolean;
|
|
378
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
415
379
|
} & {
|
|
416
380
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
417
381
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -426,6 +390,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
426
390
|
[x: string]: string;
|
|
427
391
|
}): void;
|
|
428
392
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
393
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
429
394
|
setLoadingP(p?: Promise<void>): void;
|
|
430
395
|
load(): Promise<void>;
|
|
431
396
|
loadPre(): Promise<void>;
|
|
@@ -444,19 +409,20 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
444
409
|
[x: string]: string;
|
|
445
410
|
}>;
|
|
446
411
|
afterCreate(): void;
|
|
447
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
412
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
|
|
448
413
|
} & {
|
|
449
414
|
getCanonicalAssemblyName(asmName: string): string | undefined;
|
|
450
415
|
getCanonicalAssemblyName2(asmName: string): string;
|
|
451
416
|
get(asmName: string): ({
|
|
452
417
|
configuration: any;
|
|
453
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
418
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
454
419
|
error: unknown;
|
|
455
420
|
loadingP: Promise<void> | undefined;
|
|
456
421
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
457
422
|
refNameAliases: {
|
|
458
423
|
[x: string]: string;
|
|
459
424
|
} | undefined;
|
|
425
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
460
426
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
461
427
|
} & {
|
|
462
428
|
getConf(arg: string): any;
|
|
@@ -480,9 +446,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
480
446
|
readonly refNames: string[] | undefined;
|
|
481
447
|
} & {
|
|
482
448
|
getCanonicalRefName(refName: string): string | undefined;
|
|
483
|
-
getCanonicalRefName2(
|
|
449
|
+
getCanonicalRefName2(refName: string): string;
|
|
484
450
|
getRefNameColor(refName: string): string | undefined;
|
|
485
451
|
isValidRefName(refName: string): boolean;
|
|
452
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
486
453
|
} & {
|
|
487
454
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
488
455
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -497,6 +464,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
497
464
|
[x: string]: string;
|
|
498
465
|
}): void;
|
|
499
466
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
467
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
500
468
|
setLoadingP(p?: Promise<void>): void;
|
|
501
469
|
load(): Promise<void>;
|
|
502
470
|
loadPre(): Promise<void>;
|
|
@@ -515,8 +483,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
515
483
|
[x: string]: string;
|
|
516
484
|
}>;
|
|
517
485
|
afterCreate(): void;
|
|
518
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
519
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
486
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
487
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
520
488
|
}, {
|
|
521
489
|
error: unknown;
|
|
522
490
|
loadingP: Promise<void> | undefined;
|
|
@@ -524,6 +492,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
524
492
|
refNameAliases: {
|
|
525
493
|
[x: string]: string;
|
|
526
494
|
} | undefined;
|
|
495
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
527
496
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
528
497
|
} & {
|
|
529
498
|
getConf(arg: string): any;
|
|
@@ -547,9 +516,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
547
516
|
readonly refNames: string[] | undefined;
|
|
548
517
|
} & {
|
|
549
518
|
getCanonicalRefName(refName: string): string | undefined;
|
|
550
|
-
getCanonicalRefName2(
|
|
519
|
+
getCanonicalRefName2(refName: string): string;
|
|
551
520
|
getRefNameColor(refName: string): string | undefined;
|
|
552
521
|
isValidRefName(refName: string): boolean;
|
|
522
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
553
523
|
} & {
|
|
554
524
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
555
525
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -564,6 +534,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
564
534
|
[x: string]: string;
|
|
565
535
|
}): void;
|
|
566
536
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
537
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
567
538
|
setLoadingP(p?: Promise<void>): void;
|
|
568
539
|
load(): Promise<void>;
|
|
569
540
|
loadPre(): Promise<void>;
|
|
@@ -582,20 +553,21 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
582
553
|
[x: string]: string;
|
|
583
554
|
}>;
|
|
584
555
|
afterCreate(): void;
|
|
585
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
556
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
|
|
586
557
|
readonly assemblyNamesList: any[];
|
|
587
558
|
readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
|
|
588
559
|
readonly rpcManager: RpcManager;
|
|
589
560
|
} & {
|
|
590
561
|
waitForAssembly(assemblyName: string): Promise<({
|
|
591
562
|
configuration: any;
|
|
592
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
563
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
593
564
|
error: unknown;
|
|
594
565
|
loadingP: Promise<void> | undefined;
|
|
595
566
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
596
567
|
refNameAliases: {
|
|
597
568
|
[x: string]: string;
|
|
598
569
|
} | undefined;
|
|
570
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
599
571
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
600
572
|
} & {
|
|
601
573
|
getConf(arg: string): any;
|
|
@@ -619,9 +591,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
619
591
|
readonly refNames: string[] | undefined;
|
|
620
592
|
} & {
|
|
621
593
|
getCanonicalRefName(refName: string): string | undefined;
|
|
622
|
-
getCanonicalRefName2(
|
|
594
|
+
getCanonicalRefName2(refName: string): string;
|
|
623
595
|
getRefNameColor(refName: string): string | undefined;
|
|
624
596
|
isValidRefName(refName: string): boolean;
|
|
597
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
625
598
|
} & {
|
|
626
599
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
627
600
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -636,6 +609,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
636
609
|
[x: string]: string;
|
|
637
610
|
}): void;
|
|
638
611
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
612
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
639
613
|
setLoadingP(p?: Promise<void>): void;
|
|
640
614
|
load(): Promise<void>;
|
|
641
615
|
loadPre(): Promise<void>;
|
|
@@ -654,8 +628,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
654
628
|
[x: string]: string;
|
|
655
629
|
}>;
|
|
656
630
|
afterCreate(): void;
|
|
657
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
658
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
631
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
632
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
659
633
|
}, {
|
|
660
634
|
error: unknown;
|
|
661
635
|
loadingP: Promise<void> | undefined;
|
|
@@ -663,6 +637,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
663
637
|
refNameAliases: {
|
|
664
638
|
[x: string]: string;
|
|
665
639
|
} | undefined;
|
|
640
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
666
641
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
667
642
|
} & {
|
|
668
643
|
getConf(arg: string): any;
|
|
@@ -686,9 +661,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
686
661
|
readonly refNames: string[] | undefined;
|
|
687
662
|
} & {
|
|
688
663
|
getCanonicalRefName(refName: string): string | undefined;
|
|
689
|
-
getCanonicalRefName2(
|
|
664
|
+
getCanonicalRefName2(refName: string): string;
|
|
690
665
|
getRefNameColor(refName: string): string | undefined;
|
|
691
666
|
isValidRefName(refName: string): boolean;
|
|
667
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
692
668
|
} & {
|
|
693
669
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
694
670
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -703,6 +679,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
703
679
|
[x: string]: string;
|
|
704
680
|
}): void;
|
|
705
681
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
682
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
706
683
|
setLoadingP(p?: Promise<void>): void;
|
|
707
684
|
load(): Promise<void>;
|
|
708
685
|
loadPre(): Promise<void>;
|
|
@@ -721,21 +698,15 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
721
698
|
[x: string]: string;
|
|
722
699
|
}>;
|
|
723
700
|
afterCreate(): void;
|
|
724
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
701
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
725
702
|
getRefNameMapForAdapter(adapterConf: {
|
|
726
703
|
[x: string]: unknown;
|
|
727
|
-
}, assemblyName: string | undefined, opts: {
|
|
728
|
-
stopToken?: string;
|
|
729
|
-
sessionId: string;
|
|
730
|
-
}): Promise<{
|
|
704
|
+
}, assemblyName: string | undefined, opts: import("node_modules/@jbrowse/core/src/assemblyManager/assemblyManager.ts").AssemblyBaseOpts): Promise<{
|
|
731
705
|
[x: string]: string;
|
|
732
706
|
} | undefined>;
|
|
733
707
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
734
708
|
[x: string]: unknown;
|
|
735
|
-
}, assemblyName: string | undefined, opts: {
|
|
736
|
-
stopToken?: string;
|
|
737
|
-
sessionId: string;
|
|
738
|
-
}): Promise<{
|
|
709
|
+
}, assemblyName: string | undefined, opts: import("node_modules/@jbrowse/core/src/assemblyManager/assemblyManager.ts").AssemblyBaseOpts): Promise<{
|
|
739
710
|
[x: string]: string;
|
|
740
711
|
} | undefined>;
|
|
741
712
|
isValidRefName(refName: string, assemblyName: string): boolean;
|
|
@@ -743,9 +714,9 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
743
714
|
afterAttach(): void;
|
|
744
715
|
removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
|
|
745
716
|
addAssembly(configuration: any): void;
|
|
746
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
|
|
747
|
-
assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
748
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
717
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
718
|
+
assemblies: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
719
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
749
720
|
}, {
|
|
750
721
|
error: unknown;
|
|
751
722
|
loadingP: Promise<void> | undefined;
|
|
@@ -753,6 +724,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
753
724
|
refNameAliases: {
|
|
754
725
|
[x: string]: string;
|
|
755
726
|
} | undefined;
|
|
727
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
756
728
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
757
729
|
} & {
|
|
758
730
|
getConf(arg: string): any;
|
|
@@ -776,9 +748,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
776
748
|
readonly refNames: string[] | undefined;
|
|
777
749
|
} & {
|
|
778
750
|
getCanonicalRefName(refName: string): string | undefined;
|
|
779
|
-
getCanonicalRefName2(
|
|
751
|
+
getCanonicalRefName2(refName: string): string;
|
|
780
752
|
getRefNameColor(refName: string): string | undefined;
|
|
781
753
|
isValidRefName(refName: string): boolean;
|
|
754
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
782
755
|
} & {
|
|
783
756
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
784
757
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -793,6 +766,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
793
766
|
[x: string]: string;
|
|
794
767
|
}): void;
|
|
795
768
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
769
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
796
770
|
setLoadingP(p?: Promise<void>): void;
|
|
797
771
|
load(): Promise<void>;
|
|
798
772
|
loadPre(): Promise<void>;
|
|
@@ -811,17 +785,18 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
811
785
|
[x: string]: string;
|
|
812
786
|
}>;
|
|
813
787
|
afterCreate(): void;
|
|
814
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
788
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
815
789
|
}, {
|
|
816
790
|
readonly assemblyNameMap: Record<string, {
|
|
817
791
|
configuration: any;
|
|
818
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
792
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
819
793
|
error: unknown;
|
|
820
794
|
loadingP: Promise<void> | undefined;
|
|
821
795
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
822
796
|
refNameAliases: {
|
|
823
797
|
[x: string]: string;
|
|
824
798
|
} | undefined;
|
|
799
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
825
800
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
826
801
|
} & {
|
|
827
802
|
getConf(arg: string): any;
|
|
@@ -845,9 +820,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
845
820
|
readonly refNames: string[] | undefined;
|
|
846
821
|
} & {
|
|
847
822
|
getCanonicalRefName(refName: string): string | undefined;
|
|
848
|
-
getCanonicalRefName2(
|
|
823
|
+
getCanonicalRefName2(refName: string): string;
|
|
849
824
|
getRefNameColor(refName: string): string | undefined;
|
|
850
825
|
isValidRefName(refName: string): boolean;
|
|
826
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
851
827
|
} & {
|
|
852
828
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
853
829
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -862,6 +838,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
862
838
|
[x: string]: string;
|
|
863
839
|
}): void;
|
|
864
840
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
841
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
865
842
|
setLoadingP(p?: Promise<void>): void;
|
|
866
843
|
load(): Promise<void>;
|
|
867
844
|
loadPre(): Promise<void>;
|
|
@@ -880,8 +857,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
880
857
|
[x: string]: string;
|
|
881
858
|
}>;
|
|
882
859
|
afterCreate(): void;
|
|
883
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
884
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
860
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
861
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
885
862
|
}, {
|
|
886
863
|
error: unknown;
|
|
887
864
|
loadingP: Promise<void> | undefined;
|
|
@@ -889,6 +866,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
889
866
|
refNameAliases: {
|
|
890
867
|
[x: string]: string;
|
|
891
868
|
} | undefined;
|
|
869
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
892
870
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
893
871
|
} & {
|
|
894
872
|
getConf(arg: string): any;
|
|
@@ -912,9 +890,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
912
890
|
readonly refNames: string[] | undefined;
|
|
913
891
|
} & {
|
|
914
892
|
getCanonicalRefName(refName: string): string | undefined;
|
|
915
|
-
getCanonicalRefName2(
|
|
893
|
+
getCanonicalRefName2(refName: string): string;
|
|
916
894
|
getRefNameColor(refName: string): string | undefined;
|
|
917
895
|
isValidRefName(refName: string): boolean;
|
|
896
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
918
897
|
} & {
|
|
919
898
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
920
899
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -929,6 +908,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
929
908
|
[x: string]: string;
|
|
930
909
|
}): void;
|
|
931
910
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
911
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
932
912
|
setLoadingP(p?: Promise<void>): void;
|
|
933
913
|
load(): Promise<void>;
|
|
934
914
|
loadPre(): Promise<void>;
|
|
@@ -947,19 +927,20 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
947
927
|
[x: string]: string;
|
|
948
928
|
}>;
|
|
949
929
|
afterCreate(): void;
|
|
950
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
930
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
|
|
951
931
|
} & {
|
|
952
932
|
getCanonicalAssemblyName(asmName: string): string | undefined;
|
|
953
933
|
getCanonicalAssemblyName2(asmName: string): string;
|
|
954
934
|
get(asmName: string): ({
|
|
955
935
|
configuration: any;
|
|
956
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
936
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
957
937
|
error: unknown;
|
|
958
938
|
loadingP: Promise<void> | undefined;
|
|
959
939
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
960
940
|
refNameAliases: {
|
|
961
941
|
[x: string]: string;
|
|
962
942
|
} | undefined;
|
|
943
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
963
944
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
964
945
|
} & {
|
|
965
946
|
getConf(arg: string): any;
|
|
@@ -983,9 +964,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
983
964
|
readonly refNames: string[] | undefined;
|
|
984
965
|
} & {
|
|
985
966
|
getCanonicalRefName(refName: string): string | undefined;
|
|
986
|
-
getCanonicalRefName2(
|
|
967
|
+
getCanonicalRefName2(refName: string): string;
|
|
987
968
|
getRefNameColor(refName: string): string | undefined;
|
|
988
969
|
isValidRefName(refName: string): boolean;
|
|
970
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
989
971
|
} & {
|
|
990
972
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
991
973
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -1000,6 +982,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1000
982
|
[x: string]: string;
|
|
1001
983
|
}): void;
|
|
1002
984
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
985
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
1003
986
|
setLoadingP(p?: Promise<void>): void;
|
|
1004
987
|
load(): Promise<void>;
|
|
1005
988
|
loadPre(): Promise<void>;
|
|
@@ -1018,8 +1001,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1018
1001
|
[x: string]: string;
|
|
1019
1002
|
}>;
|
|
1020
1003
|
afterCreate(): void;
|
|
1021
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1022
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1004
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1005
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
1023
1006
|
}, {
|
|
1024
1007
|
error: unknown;
|
|
1025
1008
|
loadingP: Promise<void> | undefined;
|
|
@@ -1027,6 +1010,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1027
1010
|
refNameAliases: {
|
|
1028
1011
|
[x: string]: string;
|
|
1029
1012
|
} | undefined;
|
|
1013
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
1030
1014
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1031
1015
|
} & {
|
|
1032
1016
|
getConf(arg: string): any;
|
|
@@ -1050,9 +1034,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1050
1034
|
readonly refNames: string[] | undefined;
|
|
1051
1035
|
} & {
|
|
1052
1036
|
getCanonicalRefName(refName: string): string | undefined;
|
|
1053
|
-
getCanonicalRefName2(
|
|
1037
|
+
getCanonicalRefName2(refName: string): string;
|
|
1054
1038
|
getRefNameColor(refName: string): string | undefined;
|
|
1055
1039
|
isValidRefName(refName: string): boolean;
|
|
1040
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
1056
1041
|
} & {
|
|
1057
1042
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1058
1043
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -1067,6 +1052,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1067
1052
|
[x: string]: string;
|
|
1068
1053
|
}): void;
|
|
1069
1054
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1055
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
1070
1056
|
setLoadingP(p?: Promise<void>): void;
|
|
1071
1057
|
load(): Promise<void>;
|
|
1072
1058
|
loadPre(): Promise<void>;
|
|
@@ -1085,20 +1071,21 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1085
1071
|
[x: string]: string;
|
|
1086
1072
|
}>;
|
|
1087
1073
|
afterCreate(): void;
|
|
1088
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
1074
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
|
|
1089
1075
|
readonly assemblyNamesList: any[];
|
|
1090
1076
|
readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
|
|
1091
1077
|
readonly rpcManager: RpcManager;
|
|
1092
1078
|
} & {
|
|
1093
1079
|
waitForAssembly(assemblyName: string): Promise<({
|
|
1094
1080
|
configuration: any;
|
|
1095
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1081
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1096
1082
|
error: unknown;
|
|
1097
1083
|
loadingP: Promise<void> | undefined;
|
|
1098
1084
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1099
1085
|
refNameAliases: {
|
|
1100
1086
|
[x: string]: string;
|
|
1101
1087
|
} | undefined;
|
|
1088
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
1102
1089
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1103
1090
|
} & {
|
|
1104
1091
|
getConf(arg: string): any;
|
|
@@ -1122,9 +1109,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1122
1109
|
readonly refNames: string[] | undefined;
|
|
1123
1110
|
} & {
|
|
1124
1111
|
getCanonicalRefName(refName: string): string | undefined;
|
|
1125
|
-
getCanonicalRefName2(
|
|
1112
|
+
getCanonicalRefName2(refName: string): string;
|
|
1126
1113
|
getRefNameColor(refName: string): string | undefined;
|
|
1127
1114
|
isValidRefName(refName: string): boolean;
|
|
1115
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
1128
1116
|
} & {
|
|
1129
1117
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1130
1118
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -1139,6 +1127,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1139
1127
|
[x: string]: string;
|
|
1140
1128
|
}): void;
|
|
1141
1129
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1130
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
1142
1131
|
setLoadingP(p?: Promise<void>): void;
|
|
1143
1132
|
load(): Promise<void>;
|
|
1144
1133
|
loadPre(): Promise<void>;
|
|
@@ -1157,8 +1146,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1157
1146
|
[x: string]: string;
|
|
1158
1147
|
}>;
|
|
1159
1148
|
afterCreate(): void;
|
|
1160
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1161
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1149
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1150
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
1162
1151
|
}, {
|
|
1163
1152
|
error: unknown;
|
|
1164
1153
|
loadingP: Promise<void> | undefined;
|
|
@@ -1166,6 +1155,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1166
1155
|
refNameAliases: {
|
|
1167
1156
|
[x: string]: string;
|
|
1168
1157
|
} | undefined;
|
|
1158
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
1169
1159
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1170
1160
|
} & {
|
|
1171
1161
|
getConf(arg: string): any;
|
|
@@ -1189,9 +1179,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1189
1179
|
readonly refNames: string[] | undefined;
|
|
1190
1180
|
} & {
|
|
1191
1181
|
getCanonicalRefName(refName: string): string | undefined;
|
|
1192
|
-
getCanonicalRefName2(
|
|
1182
|
+
getCanonicalRefName2(refName: string): string;
|
|
1193
1183
|
getRefNameColor(refName: string): string | undefined;
|
|
1194
1184
|
isValidRefName(refName: string): boolean;
|
|
1185
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
1195
1186
|
} & {
|
|
1196
1187
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1197
1188
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -1206,6 +1197,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1206
1197
|
[x: string]: string;
|
|
1207
1198
|
}): void;
|
|
1208
1199
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1200
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
1209
1201
|
setLoadingP(p?: Promise<void>): void;
|
|
1210
1202
|
load(): Promise<void>;
|
|
1211
1203
|
loadPre(): Promise<void>;
|
|
@@ -1224,21 +1216,15 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1224
1216
|
[x: string]: string;
|
|
1225
1217
|
}>;
|
|
1226
1218
|
afterCreate(): void;
|
|
1227
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1219
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1228
1220
|
getRefNameMapForAdapter(adapterConf: {
|
|
1229
1221
|
[x: string]: unknown;
|
|
1230
|
-
}, assemblyName: string | undefined, opts: {
|
|
1231
|
-
stopToken?: string;
|
|
1232
|
-
sessionId: string;
|
|
1233
|
-
}): Promise<{
|
|
1222
|
+
}, assemblyName: string | undefined, opts: import("node_modules/@jbrowse/core/src/assemblyManager/assemblyManager.ts").AssemblyBaseOpts): Promise<{
|
|
1234
1223
|
[x: string]: string;
|
|
1235
1224
|
} | undefined>;
|
|
1236
1225
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1237
1226
|
[x: string]: unknown;
|
|
1238
|
-
}, assemblyName: string | undefined, opts: {
|
|
1239
|
-
stopToken?: string;
|
|
1240
|
-
sessionId: string;
|
|
1241
|
-
}): Promise<{
|
|
1227
|
+
}, assemblyName: string | undefined, opts: import("node_modules/@jbrowse/core/src/assemblyManager/assemblyManager.ts").AssemblyBaseOpts): Promise<{
|
|
1242
1228
|
[x: string]: string;
|
|
1243
1229
|
} | undefined>;
|
|
1244
1230
|
isValidRefName(refName: string, assemblyName: string): boolean;
|
|
@@ -1246,8 +1232,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1246
1232
|
afterAttach(): void;
|
|
1247
1233
|
removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
|
|
1248
1234
|
addAssembly(configuration: any): void;
|
|
1249
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>;
|
|
1250
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1235
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>>;
|
|
1236
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1251
1237
|
rpcManager: RpcManager;
|
|
1252
1238
|
adminMode: boolean;
|
|
1253
1239
|
error: unknown;
|
|
@@ -1255,17 +1241,17 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1255
1241
|
pluginManager: PluginManager;
|
|
1256
1242
|
} & {
|
|
1257
1243
|
setError(error: unknown): void;
|
|
1258
|
-
setSession(sessionSnapshot?: SnapshotIn<import("mobx-state-tree").IAnyType>): void;
|
|
1244
|
+
setSession(sessionSnapshot?: SnapshotIn<import("@jbrowse/mobx-state-tree").IAnyType>): void;
|
|
1259
1245
|
setDefaultSession(): void;
|
|
1260
1246
|
setSessionPath(path: string): void;
|
|
1261
1247
|
renameCurrentSession(newName: string): void;
|
|
1262
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1263
|
-
jbrowse: import("mobx-state-tree").IAnyType;
|
|
1264
|
-
session: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
|
|
1265
|
-
sessionPath: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1266
|
-
assemblyManager: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
|
|
1267
|
-
assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
1268
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1248
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1249
|
+
jbrowse: import("@jbrowse/mobx-state-tree").IAnyType;
|
|
1250
|
+
session: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IAnyType>;
|
|
1251
|
+
sessionPath: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1252
|
+
assemblyManager: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1253
|
+
assemblies: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1254
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
1269
1255
|
}, {
|
|
1270
1256
|
error: unknown;
|
|
1271
1257
|
loadingP: Promise<void> | undefined;
|
|
@@ -1273,6 +1259,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1273
1259
|
refNameAliases: {
|
|
1274
1260
|
[x: string]: string;
|
|
1275
1261
|
} | undefined;
|
|
1262
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
1276
1263
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1277
1264
|
} & {
|
|
1278
1265
|
getConf(arg: string): any;
|
|
@@ -1296,9 +1283,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1296
1283
|
readonly refNames: string[] | undefined;
|
|
1297
1284
|
} & {
|
|
1298
1285
|
getCanonicalRefName(refName: string): string | undefined;
|
|
1299
|
-
getCanonicalRefName2(
|
|
1286
|
+
getCanonicalRefName2(refName: string): string;
|
|
1300
1287
|
getRefNameColor(refName: string): string | undefined;
|
|
1301
1288
|
isValidRefName(refName: string): boolean;
|
|
1289
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
1302
1290
|
} & {
|
|
1303
1291
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1304
1292
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -1313,6 +1301,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1313
1301
|
[x: string]: string;
|
|
1314
1302
|
}): void;
|
|
1315
1303
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1304
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
1316
1305
|
setLoadingP(p?: Promise<void>): void;
|
|
1317
1306
|
load(): Promise<void>;
|
|
1318
1307
|
loadPre(): Promise<void>;
|
|
@@ -1331,17 +1320,18 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1331
1320
|
[x: string]: string;
|
|
1332
1321
|
}>;
|
|
1333
1322
|
afterCreate(): void;
|
|
1334
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
1323
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1335
1324
|
}, {
|
|
1336
1325
|
readonly assemblyNameMap: Record<string, {
|
|
1337
1326
|
configuration: any;
|
|
1338
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1327
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1339
1328
|
error: unknown;
|
|
1340
1329
|
loadingP: Promise<void> | undefined;
|
|
1341
1330
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1342
1331
|
refNameAliases: {
|
|
1343
1332
|
[x: string]: string;
|
|
1344
1333
|
} | undefined;
|
|
1334
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
1345
1335
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1346
1336
|
} & {
|
|
1347
1337
|
getConf(arg: string): any;
|
|
@@ -1365,9 +1355,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1365
1355
|
readonly refNames: string[] | undefined;
|
|
1366
1356
|
} & {
|
|
1367
1357
|
getCanonicalRefName(refName: string): string | undefined;
|
|
1368
|
-
getCanonicalRefName2(
|
|
1358
|
+
getCanonicalRefName2(refName: string): string;
|
|
1369
1359
|
getRefNameColor(refName: string): string | undefined;
|
|
1370
1360
|
isValidRefName(refName: string): boolean;
|
|
1361
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
1371
1362
|
} & {
|
|
1372
1363
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1373
1364
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -1382,6 +1373,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1382
1373
|
[x: string]: string;
|
|
1383
1374
|
}): void;
|
|
1384
1375
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1376
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
1385
1377
|
setLoadingP(p?: Promise<void>): void;
|
|
1386
1378
|
load(): Promise<void>;
|
|
1387
1379
|
loadPre(): Promise<void>;
|
|
@@ -1400,8 +1392,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1400
1392
|
[x: string]: string;
|
|
1401
1393
|
}>;
|
|
1402
1394
|
afterCreate(): void;
|
|
1403
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1404
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1395
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1396
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
1405
1397
|
}, {
|
|
1406
1398
|
error: unknown;
|
|
1407
1399
|
loadingP: Promise<void> | undefined;
|
|
@@ -1409,6 +1401,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1409
1401
|
refNameAliases: {
|
|
1410
1402
|
[x: string]: string;
|
|
1411
1403
|
} | undefined;
|
|
1404
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
1412
1405
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1413
1406
|
} & {
|
|
1414
1407
|
getConf(arg: string): any;
|
|
@@ -1432,9 +1425,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1432
1425
|
readonly refNames: string[] | undefined;
|
|
1433
1426
|
} & {
|
|
1434
1427
|
getCanonicalRefName(refName: string): string | undefined;
|
|
1435
|
-
getCanonicalRefName2(
|
|
1428
|
+
getCanonicalRefName2(refName: string): string;
|
|
1436
1429
|
getRefNameColor(refName: string): string | undefined;
|
|
1437
1430
|
isValidRefName(refName: string): boolean;
|
|
1431
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
1438
1432
|
} & {
|
|
1439
1433
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1440
1434
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -1449,6 +1443,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1449
1443
|
[x: string]: string;
|
|
1450
1444
|
}): void;
|
|
1451
1445
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1446
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
1452
1447
|
setLoadingP(p?: Promise<void>): void;
|
|
1453
1448
|
load(): Promise<void>;
|
|
1454
1449
|
loadPre(): Promise<void>;
|
|
@@ -1467,19 +1462,20 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1467
1462
|
[x: string]: string;
|
|
1468
1463
|
}>;
|
|
1469
1464
|
afterCreate(): void;
|
|
1470
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
1465
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
|
|
1471
1466
|
} & {
|
|
1472
1467
|
getCanonicalAssemblyName(asmName: string): string | undefined;
|
|
1473
1468
|
getCanonicalAssemblyName2(asmName: string): string;
|
|
1474
1469
|
get(asmName: string): ({
|
|
1475
1470
|
configuration: any;
|
|
1476
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1471
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1477
1472
|
error: unknown;
|
|
1478
1473
|
loadingP: Promise<void> | undefined;
|
|
1479
1474
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1480
1475
|
refNameAliases: {
|
|
1481
1476
|
[x: string]: string;
|
|
1482
1477
|
} | undefined;
|
|
1478
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
1483
1479
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1484
1480
|
} & {
|
|
1485
1481
|
getConf(arg: string): any;
|
|
@@ -1503,9 +1499,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1503
1499
|
readonly refNames: string[] | undefined;
|
|
1504
1500
|
} & {
|
|
1505
1501
|
getCanonicalRefName(refName: string): string | undefined;
|
|
1506
|
-
getCanonicalRefName2(
|
|
1502
|
+
getCanonicalRefName2(refName: string): string;
|
|
1507
1503
|
getRefNameColor(refName: string): string | undefined;
|
|
1508
1504
|
isValidRefName(refName: string): boolean;
|
|
1505
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
1509
1506
|
} & {
|
|
1510
1507
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1511
1508
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -1520,6 +1517,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1520
1517
|
[x: string]: string;
|
|
1521
1518
|
}): void;
|
|
1522
1519
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1520
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
1523
1521
|
setLoadingP(p?: Promise<void>): void;
|
|
1524
1522
|
load(): Promise<void>;
|
|
1525
1523
|
loadPre(): Promise<void>;
|
|
@@ -1538,8 +1536,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1538
1536
|
[x: string]: string;
|
|
1539
1537
|
}>;
|
|
1540
1538
|
afterCreate(): void;
|
|
1541
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1542
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1539
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1540
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
1543
1541
|
}, {
|
|
1544
1542
|
error: unknown;
|
|
1545
1543
|
loadingP: Promise<void> | undefined;
|
|
@@ -1547,6 +1545,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1547
1545
|
refNameAliases: {
|
|
1548
1546
|
[x: string]: string;
|
|
1549
1547
|
} | undefined;
|
|
1548
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
1550
1549
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1551
1550
|
} & {
|
|
1552
1551
|
getConf(arg: string): any;
|
|
@@ -1570,9 +1569,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1570
1569
|
readonly refNames: string[] | undefined;
|
|
1571
1570
|
} & {
|
|
1572
1571
|
getCanonicalRefName(refName: string): string | undefined;
|
|
1573
|
-
getCanonicalRefName2(
|
|
1572
|
+
getCanonicalRefName2(refName: string): string;
|
|
1574
1573
|
getRefNameColor(refName: string): string | undefined;
|
|
1575
1574
|
isValidRefName(refName: string): boolean;
|
|
1575
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
1576
1576
|
} & {
|
|
1577
1577
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1578
1578
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -1587,6 +1587,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1587
1587
|
[x: string]: string;
|
|
1588
1588
|
}): void;
|
|
1589
1589
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1590
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
1590
1591
|
setLoadingP(p?: Promise<void>): void;
|
|
1591
1592
|
load(): Promise<void>;
|
|
1592
1593
|
loadPre(): Promise<void>;
|
|
@@ -1605,20 +1606,21 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1605
1606
|
[x: string]: string;
|
|
1606
1607
|
}>;
|
|
1607
1608
|
afterCreate(): void;
|
|
1608
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
1609
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
|
|
1609
1610
|
readonly assemblyNamesList: any[];
|
|
1610
1611
|
readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
|
|
1611
1612
|
readonly rpcManager: RpcManager;
|
|
1612
1613
|
} & {
|
|
1613
1614
|
waitForAssembly(assemblyName: string): Promise<({
|
|
1614
1615
|
configuration: any;
|
|
1615
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1616
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1616
1617
|
error: unknown;
|
|
1617
1618
|
loadingP: Promise<void> | undefined;
|
|
1618
1619
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1619
1620
|
refNameAliases: {
|
|
1620
1621
|
[x: string]: string;
|
|
1621
1622
|
} | undefined;
|
|
1623
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
1622
1624
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1623
1625
|
} & {
|
|
1624
1626
|
getConf(arg: string): any;
|
|
@@ -1642,9 +1644,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1642
1644
|
readonly refNames: string[] | undefined;
|
|
1643
1645
|
} & {
|
|
1644
1646
|
getCanonicalRefName(refName: string): string | undefined;
|
|
1645
|
-
getCanonicalRefName2(
|
|
1647
|
+
getCanonicalRefName2(refName: string): string;
|
|
1646
1648
|
getRefNameColor(refName: string): string | undefined;
|
|
1647
1649
|
isValidRefName(refName: string): boolean;
|
|
1650
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
1648
1651
|
} & {
|
|
1649
1652
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1650
1653
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -1659,6 +1662,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1659
1662
|
[x: string]: string;
|
|
1660
1663
|
}): void;
|
|
1661
1664
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1665
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
1662
1666
|
setLoadingP(p?: Promise<void>): void;
|
|
1663
1667
|
load(): Promise<void>;
|
|
1664
1668
|
loadPre(): Promise<void>;
|
|
@@ -1677,8 +1681,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1677
1681
|
[x: string]: string;
|
|
1678
1682
|
}>;
|
|
1679
1683
|
afterCreate(): void;
|
|
1680
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1681
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1684
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1685
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
1682
1686
|
}, {
|
|
1683
1687
|
error: unknown;
|
|
1684
1688
|
loadingP: Promise<void> | undefined;
|
|
@@ -1686,6 +1690,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1686
1690
|
refNameAliases: {
|
|
1687
1691
|
[x: string]: string;
|
|
1688
1692
|
} | undefined;
|
|
1693
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
1689
1694
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1690
1695
|
} & {
|
|
1691
1696
|
getConf(arg: string): any;
|
|
@@ -1709,9 +1714,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1709
1714
|
readonly refNames: string[] | undefined;
|
|
1710
1715
|
} & {
|
|
1711
1716
|
getCanonicalRefName(refName: string): string | undefined;
|
|
1712
|
-
getCanonicalRefName2(
|
|
1717
|
+
getCanonicalRefName2(refName: string): string;
|
|
1713
1718
|
getRefNameColor(refName: string): string | undefined;
|
|
1714
1719
|
isValidRefName(refName: string): boolean;
|
|
1720
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
1715
1721
|
} & {
|
|
1716
1722
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
1717
1723
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -1726,6 +1732,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1726
1732
|
[x: string]: string;
|
|
1727
1733
|
}): void;
|
|
1728
1734
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1735
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
1729
1736
|
setLoadingP(p?: Promise<void>): void;
|
|
1730
1737
|
load(): Promise<void>;
|
|
1731
1738
|
loadPre(): Promise<void>;
|
|
@@ -1744,21 +1751,15 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1744
1751
|
[x: string]: string;
|
|
1745
1752
|
}>;
|
|
1746
1753
|
afterCreate(): void;
|
|
1747
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1754
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1748
1755
|
getRefNameMapForAdapter(adapterConf: {
|
|
1749
1756
|
[x: string]: unknown;
|
|
1750
|
-
}, assemblyName: string | undefined, opts: {
|
|
1751
|
-
stopToken?: string;
|
|
1752
|
-
sessionId: string;
|
|
1753
|
-
}): Promise<{
|
|
1757
|
+
}, assemblyName: string | undefined, opts: import("node_modules/@jbrowse/core/src/assemblyManager/assemblyManager.ts").AssemblyBaseOpts): Promise<{
|
|
1754
1758
|
[x: string]: string;
|
|
1755
1759
|
} | undefined>;
|
|
1756
1760
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1757
1761
|
[x: string]: unknown;
|
|
1758
|
-
}, assemblyName: string | undefined, opts: {
|
|
1759
|
-
stopToken?: string;
|
|
1760
|
-
sessionId: string;
|
|
1761
|
-
}): Promise<{
|
|
1762
|
+
}, assemblyName: string | undefined, opts: import("node_modules/@jbrowse/core/src/assemblyManager/assemblyManager.ts").AssemblyBaseOpts): Promise<{
|
|
1762
1763
|
[x: string]: string;
|
|
1763
1764
|
} | undefined>;
|
|
1764
1765
|
isValidRefName(refName: string, assemblyName: string): boolean;
|
|
@@ -1766,7 +1767,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1766
1767
|
afterAttach(): void;
|
|
1767
1768
|
removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
|
|
1768
1769
|
addAssembly(configuration: any): void;
|
|
1769
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
|
|
1770
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
|
|
1770
1771
|
}, {
|
|
1771
1772
|
rpcManager: RpcManager;
|
|
1772
1773
|
adminMode: boolean;
|
|
@@ -1775,25 +1776,21 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1775
1776
|
pluginManager: PluginManager;
|
|
1776
1777
|
} & {
|
|
1777
1778
|
setError(error: unknown): void;
|
|
1778
|
-
setSession(sessionSnapshot?: SnapshotIn<import("mobx-state-tree").IAnyType>): void;
|
|
1779
|
+
setSession(sessionSnapshot?: SnapshotIn<import("@jbrowse/mobx-state-tree").IAnyType>): void;
|
|
1779
1780
|
setDefaultSession(): void;
|
|
1780
1781
|
setSessionPath(path: string): void;
|
|
1781
1782
|
renameCurrentSession(newName: string): void;
|
|
1782
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
1783
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
1783
1784
|
} & {
|
|
1784
1785
|
readonly jbrowse: any;
|
|
1785
1786
|
readonly rpcManager: RpcManager;
|
|
1786
1787
|
readonly configuration: {
|
|
1787
1788
|
[x: string]: any;
|
|
1788
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1789
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1789
1790
|
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1790
1791
|
[x: string]: any;
|
|
1791
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject &
|
|
1792
|
-
|
|
1793
|
-
[x: string]: any;
|
|
1794
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
1795
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
1796
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
|
|
1792
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
1793
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
|
|
1797
1794
|
readonly adminMode: boolean;
|
|
1798
1795
|
readonly textSearchManager: TextSearchManager;
|
|
1799
1796
|
} & {
|
|
@@ -1815,108 +1812,14 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1815
1812
|
minimizeWidgetDrawer(): void;
|
|
1816
1813
|
showWidgetDrawer(): void;
|
|
1817
1814
|
hideAllWidgets(): void;
|
|
1818
|
-
editConfiguration(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel
|
|
1815
|
+
editConfiguration(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel | {
|
|
1816
|
+
trackId: string;
|
|
1817
|
+
}): void;
|
|
1819
1818
|
afterAttach(): void;
|
|
1820
1819
|
} & {
|
|
1821
1820
|
readonly connections: import("@jbrowse/core/pluggableElementTypes/models/baseConnectionConfig").BaseConnectionConfigModel[];
|
|
1822
1821
|
} & {
|
|
1823
|
-
makeConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel, initialSnapshot?: {}):
|
|
1824
|
-
name: string;
|
|
1825
|
-
tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
|
|
1826
|
-
configuration: {
|
|
1827
|
-
[x: string]: any;
|
|
1828
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1829
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1830
|
-
[x: string]: any;
|
|
1831
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1832
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1833
|
-
[x: string]: any;
|
|
1834
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
1835
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
1836
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
1837
|
-
name: {
|
|
1838
|
-
type: string;
|
|
1839
|
-
defaultValue: string;
|
|
1840
|
-
description: string;
|
|
1841
|
-
};
|
|
1842
|
-
assemblyNames: {
|
|
1843
|
-
type: string;
|
|
1844
|
-
defaultValue: never[];
|
|
1845
|
-
description: string;
|
|
1846
|
-
};
|
|
1847
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>;
|
|
1848
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1849
|
-
connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
|
|
1850
|
-
} & {
|
|
1851
|
-
afterAttach(): void;
|
|
1852
|
-
addTrackConf(trackConf: Record<string, unknown> | ({
|
|
1853
|
-
[x: string]: any;
|
|
1854
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1855
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1856
|
-
[x: string]: any;
|
|
1857
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1858
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1859
|
-
[x: string]: any;
|
|
1860
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
1861
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
1862
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)): any;
|
|
1863
|
-
addTrackConfs(trackConfs: (Record<string, unknown> | ({
|
|
1864
|
-
[x: string]: any;
|
|
1865
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1866
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1867
|
-
[x: string]: any;
|
|
1868
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1869
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1870
|
-
[x: string]: any;
|
|
1871
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
1872
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
1873
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>))[]): void;
|
|
1874
|
-
setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): void;
|
|
1875
|
-
clear(): void;
|
|
1876
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1877
|
-
name: import("mobx-state-tree").ISimpleType<string>;
|
|
1878
|
-
tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
1879
|
-
configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
1880
|
-
name: {
|
|
1881
|
-
type: string;
|
|
1882
|
-
defaultValue: string;
|
|
1883
|
-
description: string;
|
|
1884
|
-
};
|
|
1885
|
-
assemblyNames: {
|
|
1886
|
-
type: string;
|
|
1887
|
-
defaultValue: never[];
|
|
1888
|
-
description: string;
|
|
1889
|
-
};
|
|
1890
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
|
|
1891
|
-
}, {
|
|
1892
|
-
connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
|
|
1893
|
-
} & {
|
|
1894
|
-
afterAttach(): void;
|
|
1895
|
-
addTrackConf(trackConf: Record<string, unknown> | ({
|
|
1896
|
-
[x: string]: any;
|
|
1897
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1898
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1899
|
-
[x: string]: any;
|
|
1900
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1901
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1902
|
-
[x: string]: any;
|
|
1903
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
1904
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
1905
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)): any;
|
|
1906
|
-
addTrackConfs(trackConfs: (Record<string, unknown> | ({
|
|
1907
|
-
[x: string]: any;
|
|
1908
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1909
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1910
|
-
[x: string]: any;
|
|
1911
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1912
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
1913
|
-
[x: string]: any;
|
|
1914
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
1915
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
1916
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>))[]): void;
|
|
1917
|
-
setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): void;
|
|
1918
|
-
clear(): void;
|
|
1919
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
1822
|
+
makeConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel, initialSnapshot?: {}): any;
|
|
1920
1823
|
prepareToBreakConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): (Record<string, number> | (() => void))[] | undefined;
|
|
1921
1824
|
breakConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
|
|
1922
1825
|
deleteConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
|
|
@@ -1931,11 +1834,17 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1931
1834
|
removeActiveDialog(): void;
|
|
1932
1835
|
queueDialog(cb: (doneCallback: () => void) => [import("@jbrowse/core/util").DialogComponentType, unknown]): void;
|
|
1933
1836
|
} & {
|
|
1934
|
-
getReferring(object: import("mobx-state-tree").IAnyStateTreeNode): import("@jbrowse/product-core").ReferringNode[];
|
|
1837
|
+
getReferring(object: import("@jbrowse/mobx-state-tree").IAnyStateTreeNode): import("@jbrowse/product-core").ReferringNode[];
|
|
1935
1838
|
} & {
|
|
1936
1839
|
removeReferring(referring: import("@jbrowse/product-core").ReferringNode[], track: import("@jbrowse/core/pluggableElementTypes").BaseTrackConfig, callbacks: ((arg: string) => void)[], dereferenceTypeCount: Record<string, number>): void;
|
|
1937
1840
|
} & {
|
|
1938
1841
|
readonly tracks: import("@jbrowse/core/configuration").AnyConfigurationModel[];
|
|
1842
|
+
readonly assemblies: {
|
|
1843
|
+
sequence: {
|
|
1844
|
+
trackId: string;
|
|
1845
|
+
};
|
|
1846
|
+
}[];
|
|
1847
|
+
readonly tracksById: Record<string, import("@jbrowse/core/configuration").AnyConfigurationModel>;
|
|
1939
1848
|
} & {
|
|
1940
1849
|
addTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfiguration): any;
|
|
1941
1850
|
deleteTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
|
|
@@ -1966,17 +1875,23 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1966
1875
|
addView(typeName: string, initialState?: {}): any;
|
|
1967
1876
|
removeView(): void;
|
|
1968
1877
|
} & {
|
|
1969
|
-
getTrackActionMenuItems(config: any):
|
|
1970
|
-
|
|
1971
|
-
|
|
1972
|
-
|
|
1973
|
-
|
|
1974
|
-
|
|
1975
|
-
|
|
1976
|
-
|
|
1977
|
-
|
|
1978
|
-
|
|
1979
|
-
|
|
1878
|
+
getTrackActionMenuItems(config: any, extraTrackActions?: import("@jbrowse/core/ui").MenuItem[]): import("@jbrowse/core/ui").MenuItem[];
|
|
1879
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, {
|
|
1880
|
+
id: string;
|
|
1881
|
+
name: string;
|
|
1882
|
+
margin: number;
|
|
1883
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1884
|
+
drawerPosition: string;
|
|
1885
|
+
drawerWidth: number;
|
|
1886
|
+
widgets: import("mobx").IKeyValueMap<any>;
|
|
1887
|
+
activeWidgets: import("mobx").IKeyValueMap<import("@jbrowse/mobx-state-tree").ReferenceIdentifier | undefined>;
|
|
1888
|
+
minimized: boolean;
|
|
1889
|
+
} & {
|
|
1890
|
+
connectionInstances: any[];
|
|
1891
|
+
} & import("@jbrowse/mobx-state-tree")._NotCustomized>;
|
|
1892
|
+
assemblyManager: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1893
|
+
assemblies: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
1894
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
1980
1895
|
}, {
|
|
1981
1896
|
error: unknown;
|
|
1982
1897
|
loadingP: Promise<void> | undefined;
|
|
@@ -1984,6 +1899,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
1984
1899
|
refNameAliases: {
|
|
1985
1900
|
[x: string]: string;
|
|
1986
1901
|
} | undefined;
|
|
1902
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
1987
1903
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
1988
1904
|
} & {
|
|
1989
1905
|
getConf(arg: string): any;
|
|
@@ -2007,9 +1923,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2007
1923
|
readonly refNames: string[] | undefined;
|
|
2008
1924
|
} & {
|
|
2009
1925
|
getCanonicalRefName(refName: string): string | undefined;
|
|
2010
|
-
getCanonicalRefName2(
|
|
1926
|
+
getCanonicalRefName2(refName: string): string;
|
|
2011
1927
|
getRefNameColor(refName: string): string | undefined;
|
|
2012
1928
|
isValidRefName(refName: string): boolean;
|
|
1929
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
2013
1930
|
} & {
|
|
2014
1931
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
2015
1932
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -2024,6 +1941,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2024
1941
|
[x: string]: string;
|
|
2025
1942
|
}): void;
|
|
2026
1943
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
1944
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
2027
1945
|
setLoadingP(p?: Promise<void>): void;
|
|
2028
1946
|
load(): Promise<void>;
|
|
2029
1947
|
loadPre(): Promise<void>;
|
|
@@ -2042,17 +1960,18 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2042
1960
|
[x: string]: string;
|
|
2043
1961
|
}>;
|
|
2044
1962
|
afterCreate(): void;
|
|
2045
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
1963
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
2046
1964
|
}, {
|
|
2047
1965
|
readonly assemblyNameMap: Record<string, {
|
|
2048
1966
|
configuration: any;
|
|
2049
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1967
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2050
1968
|
error: unknown;
|
|
2051
1969
|
loadingP: Promise<void> | undefined;
|
|
2052
1970
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
2053
1971
|
refNameAliases: {
|
|
2054
1972
|
[x: string]: string;
|
|
2055
1973
|
} | undefined;
|
|
1974
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
2056
1975
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
2057
1976
|
} & {
|
|
2058
1977
|
getConf(arg: string): any;
|
|
@@ -2076,9 +1995,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2076
1995
|
readonly refNames: string[] | undefined;
|
|
2077
1996
|
} & {
|
|
2078
1997
|
getCanonicalRefName(refName: string): string | undefined;
|
|
2079
|
-
getCanonicalRefName2(
|
|
1998
|
+
getCanonicalRefName2(refName: string): string;
|
|
2080
1999
|
getRefNameColor(refName: string): string | undefined;
|
|
2081
2000
|
isValidRefName(refName: string): boolean;
|
|
2001
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
2082
2002
|
} & {
|
|
2083
2003
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
2084
2004
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -2093,6 +2013,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2093
2013
|
[x: string]: string;
|
|
2094
2014
|
}): void;
|
|
2095
2015
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2016
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
2096
2017
|
setLoadingP(p?: Promise<void>): void;
|
|
2097
2018
|
load(): Promise<void>;
|
|
2098
2019
|
loadPre(): Promise<void>;
|
|
@@ -2111,8 +2032,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2111
2032
|
[x: string]: string;
|
|
2112
2033
|
}>;
|
|
2113
2034
|
afterCreate(): void;
|
|
2114
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
2115
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
2035
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2036
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
2116
2037
|
}, {
|
|
2117
2038
|
error: unknown;
|
|
2118
2039
|
loadingP: Promise<void> | undefined;
|
|
@@ -2120,6 +2041,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2120
2041
|
refNameAliases: {
|
|
2121
2042
|
[x: string]: string;
|
|
2122
2043
|
} | undefined;
|
|
2044
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
2123
2045
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
2124
2046
|
} & {
|
|
2125
2047
|
getConf(arg: string): any;
|
|
@@ -2143,9 +2065,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2143
2065
|
readonly refNames: string[] | undefined;
|
|
2144
2066
|
} & {
|
|
2145
2067
|
getCanonicalRefName(refName: string): string | undefined;
|
|
2146
|
-
getCanonicalRefName2(
|
|
2068
|
+
getCanonicalRefName2(refName: string): string;
|
|
2147
2069
|
getRefNameColor(refName: string): string | undefined;
|
|
2148
2070
|
isValidRefName(refName: string): boolean;
|
|
2071
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
2149
2072
|
} & {
|
|
2150
2073
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
2151
2074
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -2160,6 +2083,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2160
2083
|
[x: string]: string;
|
|
2161
2084
|
}): void;
|
|
2162
2085
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2086
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
2163
2087
|
setLoadingP(p?: Promise<void>): void;
|
|
2164
2088
|
load(): Promise<void>;
|
|
2165
2089
|
loadPre(): Promise<void>;
|
|
@@ -2178,19 +2102,20 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2178
2102
|
[x: string]: string;
|
|
2179
2103
|
}>;
|
|
2180
2104
|
afterCreate(): void;
|
|
2181
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
2105
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
|
|
2182
2106
|
} & {
|
|
2183
2107
|
getCanonicalAssemblyName(asmName: string): string | undefined;
|
|
2184
2108
|
getCanonicalAssemblyName2(asmName: string): string;
|
|
2185
2109
|
get(asmName: string): ({
|
|
2186
2110
|
configuration: any;
|
|
2187
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2111
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2188
2112
|
error: unknown;
|
|
2189
2113
|
loadingP: Promise<void> | undefined;
|
|
2190
2114
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
2191
2115
|
refNameAliases: {
|
|
2192
2116
|
[x: string]: string;
|
|
2193
2117
|
} | undefined;
|
|
2118
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
2194
2119
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
2195
2120
|
} & {
|
|
2196
2121
|
getConf(arg: string): any;
|
|
@@ -2214,9 +2139,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2214
2139
|
readonly refNames: string[] | undefined;
|
|
2215
2140
|
} & {
|
|
2216
2141
|
getCanonicalRefName(refName: string): string | undefined;
|
|
2217
|
-
getCanonicalRefName2(
|
|
2142
|
+
getCanonicalRefName2(refName: string): string;
|
|
2218
2143
|
getRefNameColor(refName: string): string | undefined;
|
|
2219
2144
|
isValidRefName(refName: string): boolean;
|
|
2145
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
2220
2146
|
} & {
|
|
2221
2147
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
2222
2148
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -2231,6 +2157,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2231
2157
|
[x: string]: string;
|
|
2232
2158
|
}): void;
|
|
2233
2159
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2160
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
2234
2161
|
setLoadingP(p?: Promise<void>): void;
|
|
2235
2162
|
load(): Promise<void>;
|
|
2236
2163
|
loadPre(): Promise<void>;
|
|
@@ -2249,8 +2176,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2249
2176
|
[x: string]: string;
|
|
2250
2177
|
}>;
|
|
2251
2178
|
afterCreate(): void;
|
|
2252
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
2253
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
2179
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2180
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
2254
2181
|
}, {
|
|
2255
2182
|
error: unknown;
|
|
2256
2183
|
loadingP: Promise<void> | undefined;
|
|
@@ -2258,6 +2185,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2258
2185
|
refNameAliases: {
|
|
2259
2186
|
[x: string]: string;
|
|
2260
2187
|
} | undefined;
|
|
2188
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
2261
2189
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
2262
2190
|
} & {
|
|
2263
2191
|
getConf(arg: string): any;
|
|
@@ -2281,9 +2209,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2281
2209
|
readonly refNames: string[] | undefined;
|
|
2282
2210
|
} & {
|
|
2283
2211
|
getCanonicalRefName(refName: string): string | undefined;
|
|
2284
|
-
getCanonicalRefName2(
|
|
2212
|
+
getCanonicalRefName2(refName: string): string;
|
|
2285
2213
|
getRefNameColor(refName: string): string | undefined;
|
|
2286
2214
|
isValidRefName(refName: string): boolean;
|
|
2215
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
2287
2216
|
} & {
|
|
2288
2217
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
2289
2218
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -2298,6 +2227,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2298
2227
|
[x: string]: string;
|
|
2299
2228
|
}): void;
|
|
2300
2229
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2230
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
2301
2231
|
setLoadingP(p?: Promise<void>): void;
|
|
2302
2232
|
load(): Promise<void>;
|
|
2303
2233
|
loadPre(): Promise<void>;
|
|
@@ -2316,20 +2246,21 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2316
2246
|
[x: string]: string;
|
|
2317
2247
|
}>;
|
|
2318
2248
|
afterCreate(): void;
|
|
2319
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
2249
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
|
|
2320
2250
|
readonly assemblyNamesList: any[];
|
|
2321
2251
|
readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
|
|
2322
2252
|
readonly rpcManager: RpcManager;
|
|
2323
2253
|
} & {
|
|
2324
2254
|
waitForAssembly(assemblyName: string): Promise<({
|
|
2325
2255
|
configuration: any;
|
|
2326
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2256
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2327
2257
|
error: unknown;
|
|
2328
2258
|
loadingP: Promise<void> | undefined;
|
|
2329
2259
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
2330
2260
|
refNameAliases: {
|
|
2331
2261
|
[x: string]: string;
|
|
2332
2262
|
} | undefined;
|
|
2263
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
2333
2264
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
2334
2265
|
} & {
|
|
2335
2266
|
getConf(arg: string): any;
|
|
@@ -2353,9 +2284,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2353
2284
|
readonly refNames: string[] | undefined;
|
|
2354
2285
|
} & {
|
|
2355
2286
|
getCanonicalRefName(refName: string): string | undefined;
|
|
2356
|
-
getCanonicalRefName2(
|
|
2287
|
+
getCanonicalRefName2(refName: string): string;
|
|
2357
2288
|
getRefNameColor(refName: string): string | undefined;
|
|
2358
2289
|
isValidRefName(refName: string): boolean;
|
|
2290
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
2359
2291
|
} & {
|
|
2360
2292
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
2361
2293
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -2370,6 +2302,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2370
2302
|
[x: string]: string;
|
|
2371
2303
|
}): void;
|
|
2372
2304
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2305
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
2373
2306
|
setLoadingP(p?: Promise<void>): void;
|
|
2374
2307
|
load(): Promise<void>;
|
|
2375
2308
|
loadPre(): Promise<void>;
|
|
@@ -2388,8 +2321,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2388
2321
|
[x: string]: string;
|
|
2389
2322
|
}>;
|
|
2390
2323
|
afterCreate(): void;
|
|
2391
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
2392
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
2324
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2325
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
2393
2326
|
}, {
|
|
2394
2327
|
error: unknown;
|
|
2395
2328
|
loadingP: Promise<void> | undefined;
|
|
@@ -2397,6 +2330,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2397
2330
|
refNameAliases: {
|
|
2398
2331
|
[x: string]: string;
|
|
2399
2332
|
} | undefined;
|
|
2333
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
2400
2334
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
2401
2335
|
} & {
|
|
2402
2336
|
getConf(arg: string): any;
|
|
@@ -2420,9 +2354,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2420
2354
|
readonly refNames: string[] | undefined;
|
|
2421
2355
|
} & {
|
|
2422
2356
|
getCanonicalRefName(refName: string): string | undefined;
|
|
2423
|
-
getCanonicalRefName2(
|
|
2357
|
+
getCanonicalRefName2(refName: string): string;
|
|
2424
2358
|
getRefNameColor(refName: string): string | undefined;
|
|
2425
2359
|
isValidRefName(refName: string): boolean;
|
|
2360
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
2426
2361
|
} & {
|
|
2427
2362
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
2428
2363
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -2437,6 +2372,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2437
2372
|
[x: string]: string;
|
|
2438
2373
|
}): void;
|
|
2439
2374
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2375
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
2440
2376
|
setLoadingP(p?: Promise<void>): void;
|
|
2441
2377
|
load(): Promise<void>;
|
|
2442
2378
|
loadPre(): Promise<void>;
|
|
@@ -2455,21 +2391,15 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2455
2391
|
[x: string]: string;
|
|
2456
2392
|
}>;
|
|
2457
2393
|
afterCreate(): void;
|
|
2458
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
2394
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
2459
2395
|
getRefNameMapForAdapter(adapterConf: {
|
|
2460
2396
|
[x: string]: unknown;
|
|
2461
|
-
}, assemblyName: string | undefined, opts: {
|
|
2462
|
-
stopToken?: string;
|
|
2463
|
-
sessionId: string;
|
|
2464
|
-
}): Promise<{
|
|
2397
|
+
}, assemblyName: string | undefined, opts: import("node_modules/@jbrowse/core/src/assemblyManager/assemblyManager.ts").AssemblyBaseOpts): Promise<{
|
|
2465
2398
|
[x: string]: string;
|
|
2466
2399
|
} | undefined>;
|
|
2467
2400
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
2468
2401
|
[x: string]: unknown;
|
|
2469
|
-
}, assemblyName: string | undefined, opts: {
|
|
2470
|
-
stopToken?: string;
|
|
2471
|
-
sessionId: string;
|
|
2472
|
-
}): Promise<{
|
|
2402
|
+
}, assemblyName: string | undefined, opts: import("node_modules/@jbrowse/core/src/assemblyManager/assemblyManager.ts").AssemblyBaseOpts): Promise<{
|
|
2473
2403
|
[x: string]: string;
|
|
2474
2404
|
} | undefined>;
|
|
2475
2405
|
isValidRefName(refName: string, assemblyName: string): boolean;
|
|
@@ -2477,8 +2407,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2477
2407
|
afterAttach(): void;
|
|
2478
2408
|
removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
|
|
2479
2409
|
addAssembly(configuration: any): void;
|
|
2480
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
|
|
2481
|
-
internetAccounts: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
|
|
2410
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
|
|
2411
|
+
internetAccounts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
|
|
2482
2412
|
}, {
|
|
2483
2413
|
error: unknown;
|
|
2484
2414
|
adminMode: boolean;
|
|
@@ -2486,63 +2416,20 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2486
2416
|
rpcManager: RpcManager;
|
|
2487
2417
|
textSearchManager: TextSearchManager;
|
|
2488
2418
|
} & {
|
|
2489
|
-
setSession(sessionSnapshot: SnapshotIn<import("mobx-state-tree").IModelType<{
|
|
2490
|
-
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2491
|
-
name: import("mobx-state-tree").ISimpleType<string>;
|
|
2492
|
-
margin: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
2419
|
+
setSession(sessionSnapshot: SnapshotIn<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2420
|
+
id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2421
|
+
name: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
|
|
2422
|
+
margin: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
|
|
2493
2423
|
} & {
|
|
2494
|
-
drawerPosition: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2495
|
-
drawerWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
2496
|
-
widgets: import("mobx-state-tree").IMapType<import("mobx-state-tree").IAnyType>;
|
|
2497
|
-
activeWidgets: import("mobx-state-tree").IMapType<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>>;
|
|
2498
|
-
minimized: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2424
|
+
drawerPosition: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
2425
|
+
drawerWidth: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
2426
|
+
widgets: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IAnyType>;
|
|
2427
|
+
activeWidgets: import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>>;
|
|
2428
|
+
minimized: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
2499
2429
|
} & {
|
|
2500
|
-
connectionInstances: import("mobx-state-tree").IArrayType<import("mobx-state-tree").
|
|
2501
|
-
name: import("mobx-state-tree").ISimpleType<string>;
|
|
2502
|
-
tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
2503
|
-
configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
2504
|
-
name: {
|
|
2505
|
-
type: string;
|
|
2506
|
-
defaultValue: string;
|
|
2507
|
-
description: string;
|
|
2508
|
-
};
|
|
2509
|
-
assemblyNames: {
|
|
2510
|
-
type: string;
|
|
2511
|
-
defaultValue: never[];
|
|
2512
|
-
description: string;
|
|
2513
|
-
};
|
|
2514
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
|
|
2515
|
-
}, {
|
|
2516
|
-
connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
|
|
2517
|
-
} & {
|
|
2518
|
-
afterAttach(): void;
|
|
2519
|
-
addTrackConf(trackConf: Record<string, unknown> | ({
|
|
2520
|
-
[x: string]: any;
|
|
2521
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2522
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
2523
|
-
[x: string]: any;
|
|
2524
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2525
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
2526
|
-
[x: string]: any;
|
|
2527
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
2528
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
2529
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)): any;
|
|
2530
|
-
addTrackConfs(trackConfs: (Record<string, unknown> | ({
|
|
2531
|
-
[x: string]: any;
|
|
2532
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2533
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
2534
|
-
[x: string]: any;
|
|
2535
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2536
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
2537
|
-
[x: string]: any;
|
|
2538
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
2539
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
2540
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>))[]): void;
|
|
2541
|
-
setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): void;
|
|
2542
|
-
clear(): void;
|
|
2543
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
2430
|
+
connectionInstances: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
|
|
2544
2431
|
} & {
|
|
2545
|
-
view: import("mobx-state-tree").IAnyModelType;
|
|
2432
|
+
view: import("@jbrowse/mobx-state-tree").IAnyModelType;
|
|
2546
2433
|
}, {
|
|
2547
2434
|
selection: unknown;
|
|
2548
2435
|
hovered: unknown;
|
|
@@ -2552,8 +2439,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2552
2439
|
session: any;
|
|
2553
2440
|
sessionPath: string;
|
|
2554
2441
|
assemblyManager: {
|
|
2555
|
-
assemblies: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
|
|
2556
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
2442
|
+
assemblies: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2443
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
2557
2444
|
}, {
|
|
2558
2445
|
error: unknown;
|
|
2559
2446
|
loadingP: Promise<void> | undefined;
|
|
@@ -2561,6 +2448,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2561
2448
|
refNameAliases: {
|
|
2562
2449
|
[x: string]: string;
|
|
2563
2450
|
} | undefined;
|
|
2451
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
2564
2452
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
2565
2453
|
} & {
|
|
2566
2454
|
getConf(arg: string): any;
|
|
@@ -2584,9 +2472,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2584
2472
|
readonly refNames: string[] | undefined;
|
|
2585
2473
|
} & {
|
|
2586
2474
|
getCanonicalRefName(refName: string): string | undefined;
|
|
2587
|
-
getCanonicalRefName2(
|
|
2475
|
+
getCanonicalRefName2(refName: string): string;
|
|
2588
2476
|
getRefNameColor(refName: string): string | undefined;
|
|
2589
2477
|
isValidRefName(refName: string): boolean;
|
|
2478
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
2590
2479
|
} & {
|
|
2591
2480
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
2592
2481
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -2601,6 +2490,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2601
2490
|
[x: string]: string;
|
|
2602
2491
|
}): void;
|
|
2603
2492
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2493
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
2604
2494
|
setLoadingP(p?: Promise<void>): void;
|
|
2605
2495
|
load(): Promise<void>;
|
|
2606
2496
|
loadPre(): Promise<void>;
|
|
@@ -2619,8 +2509,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2619
2509
|
[x: string]: string;
|
|
2620
2510
|
}>;
|
|
2621
2511
|
afterCreate(): void;
|
|
2622
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
2623
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
2512
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2513
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
2624
2514
|
}, {
|
|
2625
2515
|
error: unknown;
|
|
2626
2516
|
loadingP: Promise<void> | undefined;
|
|
@@ -2628,6 +2518,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2628
2518
|
refNameAliases: {
|
|
2629
2519
|
[x: string]: string;
|
|
2630
2520
|
} | undefined;
|
|
2521
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
2631
2522
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
2632
2523
|
} & {
|
|
2633
2524
|
getConf(arg: string): any;
|
|
@@ -2651,9 +2542,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2651
2542
|
readonly refNames: string[] | undefined;
|
|
2652
2543
|
} & {
|
|
2653
2544
|
getCanonicalRefName(refName: string): string | undefined;
|
|
2654
|
-
getCanonicalRefName2(
|
|
2545
|
+
getCanonicalRefName2(refName: string): string;
|
|
2655
2546
|
getRefNameColor(refName: string): string | undefined;
|
|
2656
2547
|
isValidRefName(refName: string): boolean;
|
|
2548
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
2657
2549
|
} & {
|
|
2658
2550
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
2659
2551
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -2668,6 +2560,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2668
2560
|
[x: string]: string;
|
|
2669
2561
|
}): void;
|
|
2670
2562
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2563
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
2671
2564
|
setLoadingP(p?: Promise<void>): void;
|
|
2672
2565
|
load(): Promise<void>;
|
|
2673
2566
|
loadPre(): Promise<void>;
|
|
@@ -2686,17 +2579,18 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2686
2579
|
[x: string]: string;
|
|
2687
2580
|
}>;
|
|
2688
2581
|
afterCreate(): void;
|
|
2689
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
2690
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2582
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
|
|
2583
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2691
2584
|
readonly assemblyNameMap: Record<string, {
|
|
2692
2585
|
configuration: any;
|
|
2693
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2586
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2694
2587
|
error: unknown;
|
|
2695
2588
|
loadingP: Promise<void> | undefined;
|
|
2696
2589
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
2697
2590
|
refNameAliases: {
|
|
2698
2591
|
[x: string]: string;
|
|
2699
2592
|
} | undefined;
|
|
2593
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
2700
2594
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
2701
2595
|
} & {
|
|
2702
2596
|
getConf(arg: string): any;
|
|
@@ -2720,9 +2614,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2720
2614
|
readonly refNames: string[] | undefined;
|
|
2721
2615
|
} & {
|
|
2722
2616
|
getCanonicalRefName(refName: string): string | undefined;
|
|
2723
|
-
getCanonicalRefName2(
|
|
2617
|
+
getCanonicalRefName2(refName: string): string;
|
|
2724
2618
|
getRefNameColor(refName: string): string | undefined;
|
|
2725
2619
|
isValidRefName(refName: string): boolean;
|
|
2620
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
2726
2621
|
} & {
|
|
2727
2622
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
2728
2623
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -2737,6 +2632,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2737
2632
|
[x: string]: string;
|
|
2738
2633
|
}): void;
|
|
2739
2634
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2635
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
2740
2636
|
setLoadingP(p?: Promise<void>): void;
|
|
2741
2637
|
load(): Promise<void>;
|
|
2742
2638
|
loadPre(): Promise<void>;
|
|
@@ -2755,8 +2651,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2755
2651
|
[x: string]: string;
|
|
2756
2652
|
}>;
|
|
2757
2653
|
afterCreate(): void;
|
|
2758
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
2759
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
2654
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2655
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
2760
2656
|
}, {
|
|
2761
2657
|
error: unknown;
|
|
2762
2658
|
loadingP: Promise<void> | undefined;
|
|
@@ -2764,6 +2660,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2764
2660
|
refNameAliases: {
|
|
2765
2661
|
[x: string]: string;
|
|
2766
2662
|
} | undefined;
|
|
2663
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
2767
2664
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
2768
2665
|
} & {
|
|
2769
2666
|
getConf(arg: string): any;
|
|
@@ -2787,9 +2684,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2787
2684
|
readonly refNames: string[] | undefined;
|
|
2788
2685
|
} & {
|
|
2789
2686
|
getCanonicalRefName(refName: string): string | undefined;
|
|
2790
|
-
getCanonicalRefName2(
|
|
2687
|
+
getCanonicalRefName2(refName: string): string;
|
|
2791
2688
|
getRefNameColor(refName: string): string | undefined;
|
|
2792
2689
|
isValidRefName(refName: string): boolean;
|
|
2690
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
2793
2691
|
} & {
|
|
2794
2692
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
2795
2693
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -2804,6 +2702,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2804
2702
|
[x: string]: string;
|
|
2805
2703
|
}): void;
|
|
2806
2704
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2705
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
2807
2706
|
setLoadingP(p?: Promise<void>): void;
|
|
2808
2707
|
load(): Promise<void>;
|
|
2809
2708
|
loadPre(): Promise<void>;
|
|
@@ -2822,19 +2721,20 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2822
2721
|
[x: string]: string;
|
|
2823
2722
|
}>;
|
|
2824
2723
|
afterCreate(): void;
|
|
2825
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
2724
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
|
|
2826
2725
|
} & {
|
|
2827
2726
|
getCanonicalAssemblyName(asmName: string): string | undefined;
|
|
2828
2727
|
getCanonicalAssemblyName2(asmName: string): string;
|
|
2829
2728
|
get(asmName: string): ({
|
|
2830
2729
|
configuration: any;
|
|
2831
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2730
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2832
2731
|
error: unknown;
|
|
2833
2732
|
loadingP: Promise<void> | undefined;
|
|
2834
2733
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
2835
2734
|
refNameAliases: {
|
|
2836
2735
|
[x: string]: string;
|
|
2837
2736
|
} | undefined;
|
|
2737
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
2838
2738
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
2839
2739
|
} & {
|
|
2840
2740
|
getConf(arg: string): any;
|
|
@@ -2858,9 +2758,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2858
2758
|
readonly refNames: string[] | undefined;
|
|
2859
2759
|
} & {
|
|
2860
2760
|
getCanonicalRefName(refName: string): string | undefined;
|
|
2861
|
-
getCanonicalRefName2(
|
|
2761
|
+
getCanonicalRefName2(refName: string): string;
|
|
2862
2762
|
getRefNameColor(refName: string): string | undefined;
|
|
2863
2763
|
isValidRefName(refName: string): boolean;
|
|
2764
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
2864
2765
|
} & {
|
|
2865
2766
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
2866
2767
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -2875,6 +2776,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2875
2776
|
[x: string]: string;
|
|
2876
2777
|
}): void;
|
|
2877
2778
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2779
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
2878
2780
|
setLoadingP(p?: Promise<void>): void;
|
|
2879
2781
|
load(): Promise<void>;
|
|
2880
2782
|
loadPre(): Promise<void>;
|
|
@@ -2893,8 +2795,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2893
2795
|
[x: string]: string;
|
|
2894
2796
|
}>;
|
|
2895
2797
|
afterCreate(): void;
|
|
2896
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
2897
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
2798
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2799
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
2898
2800
|
}, {
|
|
2899
2801
|
error: unknown;
|
|
2900
2802
|
loadingP: Promise<void> | undefined;
|
|
@@ -2902,6 +2804,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2902
2804
|
refNameAliases: {
|
|
2903
2805
|
[x: string]: string;
|
|
2904
2806
|
} | undefined;
|
|
2807
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
2905
2808
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
2906
2809
|
} & {
|
|
2907
2810
|
getConf(arg: string): any;
|
|
@@ -2925,9 +2828,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2925
2828
|
readonly refNames: string[] | undefined;
|
|
2926
2829
|
} & {
|
|
2927
2830
|
getCanonicalRefName(refName: string): string | undefined;
|
|
2928
|
-
getCanonicalRefName2(
|
|
2831
|
+
getCanonicalRefName2(refName: string): string;
|
|
2929
2832
|
getRefNameColor(refName: string): string | undefined;
|
|
2930
2833
|
isValidRefName(refName: string): boolean;
|
|
2834
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
2931
2835
|
} & {
|
|
2932
2836
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
2933
2837
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -2942,6 +2846,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2942
2846
|
[x: string]: string;
|
|
2943
2847
|
}): void;
|
|
2944
2848
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2849
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
2945
2850
|
setLoadingP(p?: Promise<void>): void;
|
|
2946
2851
|
load(): Promise<void>;
|
|
2947
2852
|
loadPre(): Promise<void>;
|
|
@@ -2960,20 +2865,21 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2960
2865
|
[x: string]: string;
|
|
2961
2866
|
}>;
|
|
2962
2867
|
afterCreate(): void;
|
|
2963
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
2868
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
|
|
2964
2869
|
readonly assemblyNamesList: any[];
|
|
2965
2870
|
readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
|
|
2966
2871
|
readonly rpcManager: RpcManager;
|
|
2967
2872
|
} & {
|
|
2968
2873
|
waitForAssembly(assemblyName: string): Promise<({
|
|
2969
2874
|
configuration: any;
|
|
2970
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2875
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
2971
2876
|
error: unknown;
|
|
2972
2877
|
loadingP: Promise<void> | undefined;
|
|
2973
2878
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
2974
2879
|
refNameAliases: {
|
|
2975
2880
|
[x: string]: string;
|
|
2976
2881
|
} | undefined;
|
|
2882
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
2977
2883
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
2978
2884
|
} & {
|
|
2979
2885
|
getConf(arg: string): any;
|
|
@@ -2997,9 +2903,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
2997
2903
|
readonly refNames: string[] | undefined;
|
|
2998
2904
|
} & {
|
|
2999
2905
|
getCanonicalRefName(refName: string): string | undefined;
|
|
3000
|
-
getCanonicalRefName2(
|
|
2906
|
+
getCanonicalRefName2(refName: string): string;
|
|
3001
2907
|
getRefNameColor(refName: string): string | undefined;
|
|
3002
2908
|
isValidRefName(refName: string): boolean;
|
|
2909
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
3003
2910
|
} & {
|
|
3004
2911
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
3005
2912
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -3014,6 +2921,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3014
2921
|
[x: string]: string;
|
|
3015
2922
|
}): void;
|
|
3016
2923
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2924
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
3017
2925
|
setLoadingP(p?: Promise<void>): void;
|
|
3018
2926
|
load(): Promise<void>;
|
|
3019
2927
|
loadPre(): Promise<void>;
|
|
@@ -3032,8 +2940,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3032
2940
|
[x: string]: string;
|
|
3033
2941
|
}>;
|
|
3034
2942
|
afterCreate(): void;
|
|
3035
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
3036
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
2943
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
2944
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
3037
2945
|
}, {
|
|
3038
2946
|
error: unknown;
|
|
3039
2947
|
loadingP: Promise<void> | undefined;
|
|
@@ -3041,6 +2949,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3041
2949
|
refNameAliases: {
|
|
3042
2950
|
[x: string]: string;
|
|
3043
2951
|
} | undefined;
|
|
2952
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
3044
2953
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
3045
2954
|
} & {
|
|
3046
2955
|
getConf(arg: string): any;
|
|
@@ -3064,9 +2973,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3064
2973
|
readonly refNames: string[] | undefined;
|
|
3065
2974
|
} & {
|
|
3066
2975
|
getCanonicalRefName(refName: string): string | undefined;
|
|
3067
|
-
getCanonicalRefName2(
|
|
2976
|
+
getCanonicalRefName2(refName: string): string;
|
|
3068
2977
|
getRefNameColor(refName: string): string | undefined;
|
|
3069
2978
|
isValidRefName(refName: string): boolean;
|
|
2979
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
3070
2980
|
} & {
|
|
3071
2981
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
3072
2982
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -3081,6 +2991,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3081
2991
|
[x: string]: string;
|
|
3082
2992
|
}): void;
|
|
3083
2993
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
2994
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
3084
2995
|
setLoadingP(p?: Promise<void>): void;
|
|
3085
2996
|
load(): Promise<void>;
|
|
3086
2997
|
loadPre(): Promise<void>;
|
|
@@ -3099,21 +3010,15 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3099
3010
|
[x: string]: string;
|
|
3100
3011
|
}>;
|
|
3101
3012
|
afterCreate(): void;
|
|
3102
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
3013
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
3103
3014
|
getRefNameMapForAdapter(adapterConf: {
|
|
3104
3015
|
[x: string]: unknown;
|
|
3105
|
-
}, assemblyName: string | undefined, opts: {
|
|
3106
|
-
stopToken?: string;
|
|
3107
|
-
sessionId: string;
|
|
3108
|
-
}): Promise<{
|
|
3016
|
+
}, assemblyName: string | undefined, opts: import("node_modules/@jbrowse/core/src/assemblyManager/assemblyManager.ts").AssemblyBaseOpts): Promise<{
|
|
3109
3017
|
[x: string]: string;
|
|
3110
3018
|
} | undefined>;
|
|
3111
3019
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3112
3020
|
[x: string]: unknown;
|
|
3113
|
-
}, assemblyName: string | undefined, opts: {
|
|
3114
|
-
stopToken?: string;
|
|
3115
|
-
sessionId: string;
|
|
3116
|
-
}): Promise<{
|
|
3021
|
+
}, assemblyName: string | undefined, opts: import("node_modules/@jbrowse/core/src/assemblyManager/assemblyManager.ts").AssemblyBaseOpts): Promise<{
|
|
3117
3022
|
[x: string]: string;
|
|
3118
3023
|
} | undefined>;
|
|
3119
3024
|
isValidRefName(refName: string, assemblyName: string): boolean;
|
|
@@ -3121,9 +3026,9 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3121
3026
|
afterAttach(): void;
|
|
3122
3027
|
removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
|
|
3123
3028
|
addAssembly(configuration: any): void;
|
|
3124
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
|
|
3125
|
-
assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
3126
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
3029
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3030
|
+
assemblies: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3031
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
3127
3032
|
}, {
|
|
3128
3033
|
error: unknown;
|
|
3129
3034
|
loadingP: Promise<void> | undefined;
|
|
@@ -3131,6 +3036,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3131
3036
|
refNameAliases: {
|
|
3132
3037
|
[x: string]: string;
|
|
3133
3038
|
} | undefined;
|
|
3039
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
3134
3040
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
3135
3041
|
} & {
|
|
3136
3042
|
getConf(arg: string): any;
|
|
@@ -3154,9 +3060,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3154
3060
|
readonly refNames: string[] | undefined;
|
|
3155
3061
|
} & {
|
|
3156
3062
|
getCanonicalRefName(refName: string): string | undefined;
|
|
3157
|
-
getCanonicalRefName2(
|
|
3063
|
+
getCanonicalRefName2(refName: string): string;
|
|
3158
3064
|
getRefNameColor(refName: string): string | undefined;
|
|
3159
3065
|
isValidRefName(refName: string): boolean;
|
|
3066
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
3160
3067
|
} & {
|
|
3161
3068
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
3162
3069
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -3171,6 +3078,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3171
3078
|
[x: string]: string;
|
|
3172
3079
|
}): void;
|
|
3173
3080
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3081
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
3174
3082
|
setLoadingP(p?: Promise<void>): void;
|
|
3175
3083
|
load(): Promise<void>;
|
|
3176
3084
|
loadPre(): Promise<void>;
|
|
@@ -3189,17 +3097,18 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3189
3097
|
[x: string]: string;
|
|
3190
3098
|
}>;
|
|
3191
3099
|
afterCreate(): void;
|
|
3192
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
3100
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3193
3101
|
}, {
|
|
3194
3102
|
readonly assemblyNameMap: Record<string, {
|
|
3195
3103
|
configuration: any;
|
|
3196
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3104
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3197
3105
|
error: unknown;
|
|
3198
3106
|
loadingP: Promise<void> | undefined;
|
|
3199
3107
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
3200
3108
|
refNameAliases: {
|
|
3201
3109
|
[x: string]: string;
|
|
3202
3110
|
} | undefined;
|
|
3111
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
3203
3112
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
3204
3113
|
} & {
|
|
3205
3114
|
getConf(arg: string): any;
|
|
@@ -3223,9 +3132,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3223
3132
|
readonly refNames: string[] | undefined;
|
|
3224
3133
|
} & {
|
|
3225
3134
|
getCanonicalRefName(refName: string): string | undefined;
|
|
3226
|
-
getCanonicalRefName2(
|
|
3135
|
+
getCanonicalRefName2(refName: string): string;
|
|
3227
3136
|
getRefNameColor(refName: string): string | undefined;
|
|
3228
3137
|
isValidRefName(refName: string): boolean;
|
|
3138
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
3229
3139
|
} & {
|
|
3230
3140
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
3231
3141
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -3240,6 +3150,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3240
3150
|
[x: string]: string;
|
|
3241
3151
|
}): void;
|
|
3242
3152
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3153
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
3243
3154
|
setLoadingP(p?: Promise<void>): void;
|
|
3244
3155
|
load(): Promise<void>;
|
|
3245
3156
|
loadPre(): Promise<void>;
|
|
@@ -3258,8 +3169,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3258
3169
|
[x: string]: string;
|
|
3259
3170
|
}>;
|
|
3260
3171
|
afterCreate(): void;
|
|
3261
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
3262
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
3172
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3173
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
3263
3174
|
}, {
|
|
3264
3175
|
error: unknown;
|
|
3265
3176
|
loadingP: Promise<void> | undefined;
|
|
@@ -3267,6 +3178,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3267
3178
|
refNameAliases: {
|
|
3268
3179
|
[x: string]: string;
|
|
3269
3180
|
} | undefined;
|
|
3181
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
3270
3182
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
3271
3183
|
} & {
|
|
3272
3184
|
getConf(arg: string): any;
|
|
@@ -3290,9 +3202,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3290
3202
|
readonly refNames: string[] | undefined;
|
|
3291
3203
|
} & {
|
|
3292
3204
|
getCanonicalRefName(refName: string): string | undefined;
|
|
3293
|
-
getCanonicalRefName2(
|
|
3205
|
+
getCanonicalRefName2(refName: string): string;
|
|
3294
3206
|
getRefNameColor(refName: string): string | undefined;
|
|
3295
3207
|
isValidRefName(refName: string): boolean;
|
|
3208
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
3296
3209
|
} & {
|
|
3297
3210
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
3298
3211
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -3307,6 +3220,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3307
3220
|
[x: string]: string;
|
|
3308
3221
|
}): void;
|
|
3309
3222
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3223
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
3310
3224
|
setLoadingP(p?: Promise<void>): void;
|
|
3311
3225
|
load(): Promise<void>;
|
|
3312
3226
|
loadPre(): Promise<void>;
|
|
@@ -3325,19 +3239,20 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3325
3239
|
[x: string]: string;
|
|
3326
3240
|
}>;
|
|
3327
3241
|
afterCreate(): void;
|
|
3328
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
3242
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
|
|
3329
3243
|
} & {
|
|
3330
3244
|
getCanonicalAssemblyName(asmName: string): string | undefined;
|
|
3331
3245
|
getCanonicalAssemblyName2(asmName: string): string;
|
|
3332
3246
|
get(asmName: string): ({
|
|
3333
3247
|
configuration: any;
|
|
3334
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3248
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3335
3249
|
error: unknown;
|
|
3336
3250
|
loadingP: Promise<void> | undefined;
|
|
3337
3251
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
3338
3252
|
refNameAliases: {
|
|
3339
3253
|
[x: string]: string;
|
|
3340
3254
|
} | undefined;
|
|
3255
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
3341
3256
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
3342
3257
|
} & {
|
|
3343
3258
|
getConf(arg: string): any;
|
|
@@ -3361,9 +3276,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3361
3276
|
readonly refNames: string[] | undefined;
|
|
3362
3277
|
} & {
|
|
3363
3278
|
getCanonicalRefName(refName: string): string | undefined;
|
|
3364
|
-
getCanonicalRefName2(
|
|
3279
|
+
getCanonicalRefName2(refName: string): string;
|
|
3365
3280
|
getRefNameColor(refName: string): string | undefined;
|
|
3366
3281
|
isValidRefName(refName: string): boolean;
|
|
3282
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
3367
3283
|
} & {
|
|
3368
3284
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
3369
3285
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -3378,6 +3294,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3378
3294
|
[x: string]: string;
|
|
3379
3295
|
}): void;
|
|
3380
3296
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3297
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
3381
3298
|
setLoadingP(p?: Promise<void>): void;
|
|
3382
3299
|
load(): Promise<void>;
|
|
3383
3300
|
loadPre(): Promise<void>;
|
|
@@ -3396,8 +3313,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3396
3313
|
[x: string]: string;
|
|
3397
3314
|
}>;
|
|
3398
3315
|
afterCreate(): void;
|
|
3399
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
3400
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
3316
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3317
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
3401
3318
|
}, {
|
|
3402
3319
|
error: unknown;
|
|
3403
3320
|
loadingP: Promise<void> | undefined;
|
|
@@ -3405,6 +3322,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3405
3322
|
refNameAliases: {
|
|
3406
3323
|
[x: string]: string;
|
|
3407
3324
|
} | undefined;
|
|
3325
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
3408
3326
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
3409
3327
|
} & {
|
|
3410
3328
|
getConf(arg: string): any;
|
|
@@ -3428,9 +3346,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3428
3346
|
readonly refNames: string[] | undefined;
|
|
3429
3347
|
} & {
|
|
3430
3348
|
getCanonicalRefName(refName: string): string | undefined;
|
|
3431
|
-
getCanonicalRefName2(
|
|
3349
|
+
getCanonicalRefName2(refName: string): string;
|
|
3432
3350
|
getRefNameColor(refName: string): string | undefined;
|
|
3433
3351
|
isValidRefName(refName: string): boolean;
|
|
3352
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
3434
3353
|
} & {
|
|
3435
3354
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
3436
3355
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -3445,6 +3364,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3445
3364
|
[x: string]: string;
|
|
3446
3365
|
}): void;
|
|
3447
3366
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3367
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
3448
3368
|
setLoadingP(p?: Promise<void>): void;
|
|
3449
3369
|
load(): Promise<void>;
|
|
3450
3370
|
loadPre(): Promise<void>;
|
|
@@ -3463,20 +3383,21 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3463
3383
|
[x: string]: string;
|
|
3464
3384
|
}>;
|
|
3465
3385
|
afterCreate(): void;
|
|
3466
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
3386
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
|
|
3467
3387
|
readonly assemblyNamesList: any[];
|
|
3468
3388
|
readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
|
|
3469
3389
|
readonly rpcManager: RpcManager;
|
|
3470
3390
|
} & {
|
|
3471
3391
|
waitForAssembly(assemblyName: string): Promise<({
|
|
3472
3392
|
configuration: any;
|
|
3473
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3393
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3474
3394
|
error: unknown;
|
|
3475
3395
|
loadingP: Promise<void> | undefined;
|
|
3476
3396
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
3477
3397
|
refNameAliases: {
|
|
3478
3398
|
[x: string]: string;
|
|
3479
3399
|
} | undefined;
|
|
3400
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
3480
3401
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
3481
3402
|
} & {
|
|
3482
3403
|
getConf(arg: string): any;
|
|
@@ -3500,9 +3421,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3500
3421
|
readonly refNames: string[] | undefined;
|
|
3501
3422
|
} & {
|
|
3502
3423
|
getCanonicalRefName(refName: string): string | undefined;
|
|
3503
|
-
getCanonicalRefName2(
|
|
3424
|
+
getCanonicalRefName2(refName: string): string;
|
|
3504
3425
|
getRefNameColor(refName: string): string | undefined;
|
|
3505
3426
|
isValidRefName(refName: string): boolean;
|
|
3427
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
3506
3428
|
} & {
|
|
3507
3429
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
3508
3430
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -3517,6 +3439,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3517
3439
|
[x: string]: string;
|
|
3518
3440
|
}): void;
|
|
3519
3441
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3442
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
3520
3443
|
setLoadingP(p?: Promise<void>): void;
|
|
3521
3444
|
load(): Promise<void>;
|
|
3522
3445
|
loadPre(): Promise<void>;
|
|
@@ -3535,8 +3458,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3535
3458
|
[x: string]: string;
|
|
3536
3459
|
}>;
|
|
3537
3460
|
afterCreate(): void;
|
|
3538
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
3539
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
3461
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3462
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
3540
3463
|
}, {
|
|
3541
3464
|
error: unknown;
|
|
3542
3465
|
loadingP: Promise<void> | undefined;
|
|
@@ -3544,6 +3467,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3544
3467
|
refNameAliases: {
|
|
3545
3468
|
[x: string]: string;
|
|
3546
3469
|
} | undefined;
|
|
3470
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
3547
3471
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
3548
3472
|
} & {
|
|
3549
3473
|
getConf(arg: string): any;
|
|
@@ -3567,9 +3491,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3567
3491
|
readonly refNames: string[] | undefined;
|
|
3568
3492
|
} & {
|
|
3569
3493
|
getCanonicalRefName(refName: string): string | undefined;
|
|
3570
|
-
getCanonicalRefName2(
|
|
3494
|
+
getCanonicalRefName2(refName: string): string;
|
|
3571
3495
|
getRefNameColor(refName: string): string | undefined;
|
|
3572
3496
|
isValidRefName(refName: string): boolean;
|
|
3497
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
3573
3498
|
} & {
|
|
3574
3499
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
3575
3500
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -3584,6 +3509,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3584
3509
|
[x: string]: string;
|
|
3585
3510
|
}): void;
|
|
3586
3511
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3512
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
3587
3513
|
setLoadingP(p?: Promise<void>): void;
|
|
3588
3514
|
load(): Promise<void>;
|
|
3589
3515
|
loadPre(): Promise<void>;
|
|
@@ -3602,21 +3528,15 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3602
3528
|
[x: string]: string;
|
|
3603
3529
|
}>;
|
|
3604
3530
|
afterCreate(): void;
|
|
3605
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
3531
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
3606
3532
|
getRefNameMapForAdapter(adapterConf: {
|
|
3607
3533
|
[x: string]: unknown;
|
|
3608
|
-
}, assemblyName: string | undefined, opts: {
|
|
3609
|
-
stopToken?: string;
|
|
3610
|
-
sessionId: string;
|
|
3611
|
-
}): Promise<{
|
|
3534
|
+
}, assemblyName: string | undefined, opts: import("node_modules/@jbrowse/core/src/assemblyManager/assemblyManager.ts").AssemblyBaseOpts): Promise<{
|
|
3612
3535
|
[x: string]: string;
|
|
3613
3536
|
} | undefined>;
|
|
3614
3537
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
3615
3538
|
[x: string]: unknown;
|
|
3616
|
-
}, assemblyName: string | undefined, opts: {
|
|
3617
|
-
stopToken?: string;
|
|
3618
|
-
sessionId: string;
|
|
3619
|
-
}): Promise<{
|
|
3539
|
+
}, assemblyName: string | undefined, opts: import("node_modules/@jbrowse/core/src/assemblyManager/assemblyManager.ts").AssemblyBaseOpts): Promise<{
|
|
3620
3540
|
[x: string]: string;
|
|
3621
3541
|
} | undefined>;
|
|
3622
3542
|
isValidRefName(refName: string, assemblyName: string): boolean;
|
|
@@ -3624,8 +3544,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3624
3544
|
afterAttach(): void;
|
|
3625
3545
|
removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
|
|
3626
3546
|
addAssembly(configuration: any): void;
|
|
3627
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>;
|
|
3628
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3547
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>>;
|
|
3548
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3629
3549
|
rpcManager: RpcManager;
|
|
3630
3550
|
adminMode: boolean;
|
|
3631
3551
|
error: unknown;
|
|
@@ -3633,17 +3553,17 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3633
3553
|
pluginManager: PluginManager;
|
|
3634
3554
|
} & {
|
|
3635
3555
|
setError(error: unknown): void;
|
|
3636
|
-
setSession(sessionSnapshot?: SnapshotIn<import("mobx-state-tree").IAnyType>): void;
|
|
3556
|
+
setSession(sessionSnapshot?: SnapshotIn<import("@jbrowse/mobx-state-tree").IAnyType>): void;
|
|
3637
3557
|
setDefaultSession(): void;
|
|
3638
3558
|
setSessionPath(path: string): void;
|
|
3639
3559
|
renameCurrentSession(newName: string): void;
|
|
3640
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
3641
|
-
jbrowse: import("mobx-state-tree").IAnyType;
|
|
3642
|
-
session: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
|
|
3643
|
-
sessionPath: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3644
|
-
assemblyManager: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
|
|
3645
|
-
assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
3646
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
3560
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3561
|
+
jbrowse: import("@jbrowse/mobx-state-tree").IAnyType;
|
|
3562
|
+
session: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IAnyType>;
|
|
3563
|
+
sessionPath: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
3564
|
+
assemblyManager: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3565
|
+
assemblies: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3566
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
3647
3567
|
}, {
|
|
3648
3568
|
error: unknown;
|
|
3649
3569
|
loadingP: Promise<void> | undefined;
|
|
@@ -3651,6 +3571,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3651
3571
|
refNameAliases: {
|
|
3652
3572
|
[x: string]: string;
|
|
3653
3573
|
} | undefined;
|
|
3574
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
3654
3575
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
3655
3576
|
} & {
|
|
3656
3577
|
getConf(arg: string): any;
|
|
@@ -3674,9 +3595,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3674
3595
|
readonly refNames: string[] | undefined;
|
|
3675
3596
|
} & {
|
|
3676
3597
|
getCanonicalRefName(refName: string): string | undefined;
|
|
3677
|
-
getCanonicalRefName2(
|
|
3598
|
+
getCanonicalRefName2(refName: string): string;
|
|
3678
3599
|
getRefNameColor(refName: string): string | undefined;
|
|
3679
3600
|
isValidRefName(refName: string): boolean;
|
|
3601
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
3680
3602
|
} & {
|
|
3681
3603
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
3682
3604
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -3691,6 +3613,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3691
3613
|
[x: string]: string;
|
|
3692
3614
|
}): void;
|
|
3693
3615
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3616
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
3694
3617
|
setLoadingP(p?: Promise<void>): void;
|
|
3695
3618
|
load(): Promise<void>;
|
|
3696
3619
|
loadPre(): Promise<void>;
|
|
@@ -3709,17 +3632,18 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3709
3632
|
[x: string]: string;
|
|
3710
3633
|
}>;
|
|
3711
3634
|
afterCreate(): void;
|
|
3712
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
3635
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
3713
3636
|
}, {
|
|
3714
3637
|
readonly assemblyNameMap: Record<string, {
|
|
3715
3638
|
configuration: any;
|
|
3716
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3639
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3717
3640
|
error: unknown;
|
|
3718
3641
|
loadingP: Promise<void> | undefined;
|
|
3719
3642
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
3720
3643
|
refNameAliases: {
|
|
3721
3644
|
[x: string]: string;
|
|
3722
3645
|
} | undefined;
|
|
3646
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
3723
3647
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
3724
3648
|
} & {
|
|
3725
3649
|
getConf(arg: string): any;
|
|
@@ -3743,9 +3667,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3743
3667
|
readonly refNames: string[] | undefined;
|
|
3744
3668
|
} & {
|
|
3745
3669
|
getCanonicalRefName(refName: string): string | undefined;
|
|
3746
|
-
getCanonicalRefName2(
|
|
3670
|
+
getCanonicalRefName2(refName: string): string;
|
|
3747
3671
|
getRefNameColor(refName: string): string | undefined;
|
|
3748
3672
|
isValidRefName(refName: string): boolean;
|
|
3673
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
3749
3674
|
} & {
|
|
3750
3675
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
3751
3676
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -3760,6 +3685,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3760
3685
|
[x: string]: string;
|
|
3761
3686
|
}): void;
|
|
3762
3687
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3688
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
3763
3689
|
setLoadingP(p?: Promise<void>): void;
|
|
3764
3690
|
load(): Promise<void>;
|
|
3765
3691
|
loadPre(): Promise<void>;
|
|
@@ -3778,8 +3704,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3778
3704
|
[x: string]: string;
|
|
3779
3705
|
}>;
|
|
3780
3706
|
afterCreate(): void;
|
|
3781
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
3782
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
3707
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3708
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
3783
3709
|
}, {
|
|
3784
3710
|
error: unknown;
|
|
3785
3711
|
loadingP: Promise<void> | undefined;
|
|
@@ -3787,6 +3713,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3787
3713
|
refNameAliases: {
|
|
3788
3714
|
[x: string]: string;
|
|
3789
3715
|
} | undefined;
|
|
3716
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
3790
3717
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
3791
3718
|
} & {
|
|
3792
3719
|
getConf(arg: string): any;
|
|
@@ -3810,9 +3737,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3810
3737
|
readonly refNames: string[] | undefined;
|
|
3811
3738
|
} & {
|
|
3812
3739
|
getCanonicalRefName(refName: string): string | undefined;
|
|
3813
|
-
getCanonicalRefName2(
|
|
3740
|
+
getCanonicalRefName2(refName: string): string;
|
|
3814
3741
|
getRefNameColor(refName: string): string | undefined;
|
|
3815
3742
|
isValidRefName(refName: string): boolean;
|
|
3743
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
3816
3744
|
} & {
|
|
3817
3745
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
3818
3746
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -3827,6 +3755,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3827
3755
|
[x: string]: string;
|
|
3828
3756
|
}): void;
|
|
3829
3757
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3758
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
3830
3759
|
setLoadingP(p?: Promise<void>): void;
|
|
3831
3760
|
load(): Promise<void>;
|
|
3832
3761
|
loadPre(): Promise<void>;
|
|
@@ -3845,19 +3774,20 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3845
3774
|
[x: string]: string;
|
|
3846
3775
|
}>;
|
|
3847
3776
|
afterCreate(): void;
|
|
3848
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
|
|
3777
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>>;
|
|
3849
3778
|
} & {
|
|
3850
3779
|
getCanonicalAssemblyName(asmName: string): string | undefined;
|
|
3851
3780
|
getCanonicalAssemblyName2(asmName: string): string;
|
|
3852
3781
|
get(asmName: string): ({
|
|
3853
3782
|
configuration: any;
|
|
3854
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3783
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3855
3784
|
error: unknown;
|
|
3856
3785
|
loadingP: Promise<void> | undefined;
|
|
3857
3786
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
3858
3787
|
refNameAliases: {
|
|
3859
3788
|
[x: string]: string;
|
|
3860
3789
|
} | undefined;
|
|
3790
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
3861
3791
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
3862
3792
|
} & {
|
|
3863
3793
|
getConf(arg: string): any;
|
|
@@ -3881,9 +3811,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3881
3811
|
readonly refNames: string[] | undefined;
|
|
3882
3812
|
} & {
|
|
3883
3813
|
getCanonicalRefName(refName: string): string | undefined;
|
|
3884
|
-
getCanonicalRefName2(
|
|
3814
|
+
getCanonicalRefName2(refName: string): string;
|
|
3885
3815
|
getRefNameColor(refName: string): string | undefined;
|
|
3886
3816
|
isValidRefName(refName: string): boolean;
|
|
3817
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
3887
3818
|
} & {
|
|
3888
3819
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
3889
3820
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -3898,6 +3829,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3898
3829
|
[x: string]: string;
|
|
3899
3830
|
}): void;
|
|
3900
3831
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3832
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
3901
3833
|
setLoadingP(p?: Promise<void>): void;
|
|
3902
3834
|
load(): Promise<void>;
|
|
3903
3835
|
loadPre(): Promise<void>;
|
|
@@ -3916,8 +3848,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3916
3848
|
[x: string]: string;
|
|
3917
3849
|
}>;
|
|
3918
3850
|
afterCreate(): void;
|
|
3919
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
3920
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
3851
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3852
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
3921
3853
|
}, {
|
|
3922
3854
|
error: unknown;
|
|
3923
3855
|
loadingP: Promise<void> | undefined;
|
|
@@ -3925,6 +3857,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3925
3857
|
refNameAliases: {
|
|
3926
3858
|
[x: string]: string;
|
|
3927
3859
|
} | undefined;
|
|
3860
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
3928
3861
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
3929
3862
|
} & {
|
|
3930
3863
|
getConf(arg: string): any;
|
|
@@ -3948,9 +3881,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3948
3881
|
readonly refNames: string[] | undefined;
|
|
3949
3882
|
} & {
|
|
3950
3883
|
getCanonicalRefName(refName: string): string | undefined;
|
|
3951
|
-
getCanonicalRefName2(
|
|
3884
|
+
getCanonicalRefName2(refName: string): string;
|
|
3952
3885
|
getRefNameColor(refName: string): string | undefined;
|
|
3953
3886
|
isValidRefName(refName: string): boolean;
|
|
3887
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
3954
3888
|
} & {
|
|
3955
3889
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
3956
3890
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -3965,6 +3899,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3965
3899
|
[x: string]: string;
|
|
3966
3900
|
}): void;
|
|
3967
3901
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3902
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
3968
3903
|
setLoadingP(p?: Promise<void>): void;
|
|
3969
3904
|
load(): Promise<void>;
|
|
3970
3905
|
loadPre(): Promise<void>;
|
|
@@ -3983,20 +3918,21 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
3983
3918
|
[x: string]: string;
|
|
3984
3919
|
}>;
|
|
3985
3920
|
afterCreate(): void;
|
|
3986
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
3921
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
|
|
3987
3922
|
readonly assemblyNamesList: any[];
|
|
3988
3923
|
readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
|
|
3989
3924
|
readonly rpcManager: RpcManager;
|
|
3990
3925
|
} & {
|
|
3991
3926
|
waitForAssembly(assemblyName: string): Promise<({
|
|
3992
3927
|
configuration: any;
|
|
3993
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3928
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
3994
3929
|
error: unknown;
|
|
3995
3930
|
loadingP: Promise<void> | undefined;
|
|
3996
3931
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
3997
3932
|
refNameAliases: {
|
|
3998
3933
|
[x: string]: string;
|
|
3999
3934
|
} | undefined;
|
|
3935
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
4000
3936
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
4001
3937
|
} & {
|
|
4002
3938
|
getConf(arg: string): any;
|
|
@@ -4020,9 +3956,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4020
3956
|
readonly refNames: string[] | undefined;
|
|
4021
3957
|
} & {
|
|
4022
3958
|
getCanonicalRefName(refName: string): string | undefined;
|
|
4023
|
-
getCanonicalRefName2(
|
|
3959
|
+
getCanonicalRefName2(refName: string): string;
|
|
4024
3960
|
getRefNameColor(refName: string): string | undefined;
|
|
4025
3961
|
isValidRefName(refName: string): boolean;
|
|
3962
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
4026
3963
|
} & {
|
|
4027
3964
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
4028
3965
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -4037,6 +3974,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4037
3974
|
[x: string]: string;
|
|
4038
3975
|
}): void;
|
|
4039
3976
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
3977
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
4040
3978
|
setLoadingP(p?: Promise<void>): void;
|
|
4041
3979
|
load(): Promise<void>;
|
|
4042
3980
|
loadPre(): Promise<void>;
|
|
@@ -4055,8 +3993,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4055
3993
|
[x: string]: string;
|
|
4056
3994
|
}>;
|
|
4057
3995
|
afterCreate(): void;
|
|
4058
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
4059
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
3996
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
3997
|
+
configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
|
|
4060
3998
|
}, {
|
|
4061
3999
|
error: unknown;
|
|
4062
4000
|
loadingP: Promise<void> | undefined;
|
|
@@ -4064,6 +4002,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4064
4002
|
refNameAliases: {
|
|
4065
4003
|
[x: string]: string;
|
|
4066
4004
|
} | undefined;
|
|
4005
|
+
canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
|
|
4067
4006
|
cytobands: import("@jbrowse/core/util").Feature[] | undefined;
|
|
4068
4007
|
} & {
|
|
4069
4008
|
getConf(arg: string): any;
|
|
@@ -4087,9 +4026,10 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4087
4026
|
readonly refNames: string[] | undefined;
|
|
4088
4027
|
} & {
|
|
4089
4028
|
getCanonicalRefName(refName: string): string | undefined;
|
|
4090
|
-
getCanonicalRefName2(
|
|
4029
|
+
getCanonicalRefName2(refName: string): string;
|
|
4091
4030
|
getRefNameColor(refName: string): string | undefined;
|
|
4092
4031
|
isValidRefName(refName: string): boolean;
|
|
4032
|
+
getSeqAdapterRefName(canonicalRefName: string): string;
|
|
4093
4033
|
} & {
|
|
4094
4034
|
setLoaded({ regions, refNameAliases, cytobands, }: {
|
|
4095
4035
|
regions: import("@jbrowse/core/util").Region[];
|
|
@@ -4104,6 +4044,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4104
4044
|
[x: string]: string;
|
|
4105
4045
|
}): void;
|
|
4106
4046
|
setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
|
|
4047
|
+
setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
|
|
4107
4048
|
setLoadingP(p?: Promise<void>): void;
|
|
4108
4049
|
load(): Promise<void>;
|
|
4109
4050
|
loadPre(): Promise<void>;
|
|
@@ -4122,21 +4063,15 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4122
4063
|
[x: string]: string;
|
|
4123
4064
|
}>;
|
|
4124
4065
|
afterCreate(): void;
|
|
4125
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
4066
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
4126
4067
|
getRefNameMapForAdapter(adapterConf: {
|
|
4127
4068
|
[x: string]: unknown;
|
|
4128
|
-
}, assemblyName: string | undefined, opts: {
|
|
4129
|
-
stopToken?: string;
|
|
4130
|
-
sessionId: string;
|
|
4131
|
-
}): Promise<{
|
|
4069
|
+
}, assemblyName: string | undefined, opts: import("node_modules/@jbrowse/core/src/assemblyManager/assemblyManager.ts").AssemblyBaseOpts): Promise<{
|
|
4132
4070
|
[x: string]: string;
|
|
4133
4071
|
} | undefined>;
|
|
4134
4072
|
getReverseRefNameMapForAdapter(adapterConf: {
|
|
4135
4073
|
[x: string]: unknown;
|
|
4136
|
-
}, assemblyName: string | undefined, opts: {
|
|
4137
|
-
stopToken?: string;
|
|
4138
|
-
sessionId: string;
|
|
4139
|
-
}): Promise<{
|
|
4074
|
+
}, assemblyName: string | undefined, opts: import("node_modules/@jbrowse/core/src/assemblyManager/assemblyManager.ts").AssemblyBaseOpts): Promise<{
|
|
4140
4075
|
[x: string]: string;
|
|
4141
4076
|
} | undefined>;
|
|
4142
4077
|
isValidRefName(refName: string, assemblyName: string): boolean;
|
|
@@ -4144,7 +4079,7 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4144
4079
|
afterAttach(): void;
|
|
4145
4080
|
removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
|
|
4146
4081
|
addAssembly(configuration: any): void;
|
|
4147
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
|
|
4082
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
|
|
4148
4083
|
}, {
|
|
4149
4084
|
rpcManager: RpcManager;
|
|
4150
4085
|
adminMode: boolean;
|
|
@@ -4153,25 +4088,21 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4153
4088
|
pluginManager: PluginManager;
|
|
4154
4089
|
} & {
|
|
4155
4090
|
setError(error: unknown): void;
|
|
4156
|
-
setSession(sessionSnapshot?: SnapshotIn<import("mobx-state-tree").IAnyType>): void;
|
|
4091
|
+
setSession(sessionSnapshot?: SnapshotIn<import("@jbrowse/mobx-state-tree").IAnyType>): void;
|
|
4157
4092
|
setDefaultSession(): void;
|
|
4158
4093
|
setSessionPath(path: string): void;
|
|
4159
4094
|
renameCurrentSession(newName: string): void;
|
|
4160
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
4095
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
4161
4096
|
} & {
|
|
4162
4097
|
readonly jbrowse: any;
|
|
4163
4098
|
readonly rpcManager: RpcManager;
|
|
4164
4099
|
readonly configuration: {
|
|
4165
4100
|
[x: string]: any;
|
|
4166
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4101
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4167
4102
|
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4168
4103
|
[x: string]: any;
|
|
4169
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject &
|
|
4170
|
-
|
|
4171
|
-
[x: string]: any;
|
|
4172
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4173
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4174
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
|
|
4104
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4105
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
|
|
4175
4106
|
readonly adminMode: boolean;
|
|
4176
4107
|
readonly textSearchManager: TextSearchManager;
|
|
4177
4108
|
} & {
|
|
@@ -4193,108 +4124,14 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4193
4124
|
minimizeWidgetDrawer(): void;
|
|
4194
4125
|
showWidgetDrawer(): void;
|
|
4195
4126
|
hideAllWidgets(): void;
|
|
4196
|
-
editConfiguration(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel
|
|
4127
|
+
editConfiguration(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel | {
|
|
4128
|
+
trackId: string;
|
|
4129
|
+
}): void;
|
|
4197
4130
|
afterAttach(): void;
|
|
4198
4131
|
} & {
|
|
4199
4132
|
readonly connections: import("@jbrowse/core/pluggableElementTypes/models/baseConnectionConfig").BaseConnectionConfigModel[];
|
|
4200
4133
|
} & {
|
|
4201
|
-
makeConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel, initialSnapshot?: {}):
|
|
4202
|
-
name: string;
|
|
4203
|
-
tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
|
|
4204
|
-
configuration: {
|
|
4205
|
-
[x: string]: any;
|
|
4206
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4207
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4208
|
-
[x: string]: any;
|
|
4209
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4210
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4211
|
-
[x: string]: any;
|
|
4212
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4213
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4214
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
4215
|
-
name: {
|
|
4216
|
-
type: string;
|
|
4217
|
-
defaultValue: string;
|
|
4218
|
-
description: string;
|
|
4219
|
-
};
|
|
4220
|
-
assemblyNames: {
|
|
4221
|
-
type: string;
|
|
4222
|
-
defaultValue: never[];
|
|
4223
|
-
description: string;
|
|
4224
|
-
};
|
|
4225
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>;
|
|
4226
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4227
|
-
connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
|
|
4228
|
-
} & {
|
|
4229
|
-
afterAttach(): void;
|
|
4230
|
-
addTrackConf(trackConf: Record<string, unknown> | ({
|
|
4231
|
-
[x: string]: any;
|
|
4232
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4233
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4234
|
-
[x: string]: any;
|
|
4235
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4236
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4237
|
-
[x: string]: any;
|
|
4238
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4239
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4240
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)): any;
|
|
4241
|
-
addTrackConfs(trackConfs: (Record<string, unknown> | ({
|
|
4242
|
-
[x: string]: any;
|
|
4243
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4244
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4245
|
-
[x: string]: any;
|
|
4246
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4247
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4248
|
-
[x: string]: any;
|
|
4249
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4250
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4251
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>))[]): void;
|
|
4252
|
-
setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): void;
|
|
4253
|
-
clear(): void;
|
|
4254
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
4255
|
-
name: import("mobx-state-tree").ISimpleType<string>;
|
|
4256
|
-
tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
4257
|
-
configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
4258
|
-
name: {
|
|
4259
|
-
type: string;
|
|
4260
|
-
defaultValue: string;
|
|
4261
|
-
description: string;
|
|
4262
|
-
};
|
|
4263
|
-
assemblyNames: {
|
|
4264
|
-
type: string;
|
|
4265
|
-
defaultValue: never[];
|
|
4266
|
-
description: string;
|
|
4267
|
-
};
|
|
4268
|
-
}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
|
|
4269
|
-
}, {
|
|
4270
|
-
connect(_arg: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
|
|
4271
|
-
} & {
|
|
4272
|
-
afterAttach(): void;
|
|
4273
|
-
addTrackConf(trackConf: Record<string, unknown> | ({
|
|
4274
|
-
[x: string]: any;
|
|
4275
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4276
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4277
|
-
[x: string]: any;
|
|
4278
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4279
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4280
|
-
[x: string]: any;
|
|
4281
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4282
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4283
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)): any;
|
|
4284
|
-
addTrackConfs(trackConfs: (Record<string, unknown> | ({
|
|
4285
|
-
[x: string]: any;
|
|
4286
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4287
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4288
|
-
[x: string]: any;
|
|
4289
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4290
|
-
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4291
|
-
[x: string]: any;
|
|
4292
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4293
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4294
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>))[]): void;
|
|
4295
|
-
setTrackConfs(trackConfs: import("@jbrowse/core/configuration").AnyConfigurationModel[]): void;
|
|
4296
|
-
clear(): void;
|
|
4297
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
4134
|
+
makeConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel, initialSnapshot?: {}): any;
|
|
4298
4135
|
prepareToBreakConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): (Record<string, number> | (() => void))[] | undefined;
|
|
4299
4136
|
breakConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
|
|
4300
4137
|
deleteConnection(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
|
|
@@ -4309,11 +4146,17 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4309
4146
|
removeActiveDialog(): void;
|
|
4310
4147
|
queueDialog(cb: (doneCallback: () => void) => [import("@jbrowse/core/util").DialogComponentType, unknown]): void;
|
|
4311
4148
|
} & {
|
|
4312
|
-
getReferring(object: import("mobx-state-tree").IAnyStateTreeNode): import("@jbrowse/product-core").ReferringNode[];
|
|
4149
|
+
getReferring(object: import("@jbrowse/mobx-state-tree").IAnyStateTreeNode): import("@jbrowse/product-core").ReferringNode[];
|
|
4313
4150
|
} & {
|
|
4314
4151
|
removeReferring(referring: import("@jbrowse/product-core").ReferringNode[], track: import("@jbrowse/core/pluggableElementTypes").BaseTrackConfig, callbacks: ((arg: string) => void)[], dereferenceTypeCount: Record<string, number>): void;
|
|
4315
4152
|
} & {
|
|
4316
4153
|
readonly tracks: import("@jbrowse/core/configuration").AnyConfigurationModel[];
|
|
4154
|
+
readonly assemblies: {
|
|
4155
|
+
sequence: {
|
|
4156
|
+
trackId: string;
|
|
4157
|
+
};
|
|
4158
|
+
}[];
|
|
4159
|
+
readonly tracksById: Record<string, import("@jbrowse/core/configuration").AnyConfigurationModel>;
|
|
4317
4160
|
} & {
|
|
4318
4161
|
addTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfiguration): any;
|
|
4319
4162
|
deleteTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
|
|
@@ -4344,14 +4187,20 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4344
4187
|
addView(typeName: string, initialState?: {}): any;
|
|
4345
4188
|
removeView(): void;
|
|
4346
4189
|
} & {
|
|
4347
|
-
getTrackActionMenuItems(config: any):
|
|
4348
|
-
|
|
4349
|
-
|
|
4350
|
-
|
|
4351
|
-
|
|
4352
|
-
|
|
4353
|
-
|
|
4354
|
-
|
|
4190
|
+
getTrackActionMenuItems(config: any, extraTrackActions?: import("@jbrowse/core/ui").MenuItem[]): import("@jbrowse/core/ui").MenuItem[];
|
|
4191
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, {
|
|
4192
|
+
id: string;
|
|
4193
|
+
name: string;
|
|
4194
|
+
margin: number;
|
|
4195
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4196
|
+
drawerPosition: string;
|
|
4197
|
+
drawerWidth: number;
|
|
4198
|
+
widgets: import("mobx").IKeyValueMap<any>;
|
|
4199
|
+
activeWidgets: import("mobx").IKeyValueMap<import("@jbrowse/mobx-state-tree").ReferenceIdentifier | undefined>;
|
|
4200
|
+
minimized: boolean;
|
|
4201
|
+
} & {
|
|
4202
|
+
connectionInstances: any[];
|
|
4203
|
+
} & import("@jbrowse/mobx-state-tree")._NotCustomized>>): void;
|
|
4355
4204
|
renameCurrentSession(sessionName: string): void;
|
|
4356
4205
|
setError(error: unknown): void;
|
|
4357
4206
|
addInternetAccount(internetAccount: SnapshotIn<any>): void;
|
|
@@ -4360,28 +4209,28 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4360
4209
|
readonly jbrowse: {
|
|
4361
4210
|
configuration: {
|
|
4362
4211
|
[x: string]: any;
|
|
4363
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4212
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4364
4213
|
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4365
4214
|
[x: string]: any;
|
|
4366
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4215
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4367
4216
|
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4368
4217
|
[x: string]: any;
|
|
4369
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4370
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4371
|
-
} & import("mobx-state-tree").IStateTreeNode<import("
|
|
4372
|
-
rpc: import("
|
|
4218
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4219
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4220
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
4221
|
+
rpc: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
4373
4222
|
defaultDriver: {
|
|
4374
4223
|
type: string;
|
|
4375
4224
|
description: string;
|
|
4376
4225
|
defaultValue: string;
|
|
4377
4226
|
};
|
|
4378
|
-
drivers: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IMapType<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
|
|
4379
|
-
}, import("
|
|
4227
|
+
drivers: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("@jbrowse/mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
|
|
4228
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
4380
4229
|
highResolutionScaling: {
|
|
4381
4230
|
type: string;
|
|
4382
4231
|
defaultValue: number;
|
|
4383
4232
|
};
|
|
4384
|
-
formatDetails: import("
|
|
4233
|
+
formatDetails: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
4385
4234
|
feature: {
|
|
4386
4235
|
type: string;
|
|
4387
4236
|
description: string;
|
|
@@ -4404,8 +4253,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4404
4253
|
defaultValue: number;
|
|
4405
4254
|
description: string;
|
|
4406
4255
|
};
|
|
4407
|
-
}, import("
|
|
4408
|
-
formatAbout: import("
|
|
4256
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
4257
|
+
formatAbout: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
4409
4258
|
config: {
|
|
4410
4259
|
type: string;
|
|
4411
4260
|
description: string;
|
|
@@ -4416,9 +4265,9 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4416
4265
|
type: string;
|
|
4417
4266
|
defaultValue: boolean;
|
|
4418
4267
|
};
|
|
4419
|
-
}, import("
|
|
4420
|
-
hierarchical: import("
|
|
4421
|
-
sort: import("
|
|
4268
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
4269
|
+
hierarchical: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
4270
|
+
sort: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
4422
4271
|
trackNames: {
|
|
4423
4272
|
type: string;
|
|
4424
4273
|
defaultValue: boolean;
|
|
@@ -4427,8 +4276,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4427
4276
|
type: string;
|
|
4428
4277
|
defaultValue: boolean;
|
|
4429
4278
|
};
|
|
4430
|
-
}, import("
|
|
4431
|
-
defaultCollapsed: import("
|
|
4279
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
4280
|
+
defaultCollapsed: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
4432
4281
|
categoryNames: {
|
|
4433
4282
|
type: string;
|
|
4434
4283
|
defaultValue: never[];
|
|
@@ -4441,58 +4290,50 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4441
4290
|
type: string;
|
|
4442
4291
|
defaultValue: boolean;
|
|
4443
4292
|
};
|
|
4444
|
-
}, import("
|
|
4445
|
-
}, import("
|
|
4293
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
4294
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
4446
4295
|
theme: {
|
|
4447
4296
|
type: string;
|
|
4448
4297
|
defaultValue: {};
|
|
4449
4298
|
};
|
|
4450
|
-
}, import("
|
|
4299
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>>;
|
|
4451
4300
|
assembly: {
|
|
4452
4301
|
[x: string]: any;
|
|
4453
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4302
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4454
4303
|
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4455
4304
|
[x: string]: any;
|
|
4456
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject &
|
|
4457
|
-
|
|
4458
|
-
|
|
4459
|
-
|
|
4460
|
-
|
|
4461
|
-
|
|
4462
|
-
tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
|
|
4463
|
-
internetAccounts: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
|
|
4464
|
-
connections: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
|
|
4465
|
-
aggregateTextSearchAdapters: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
|
|
4305
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4306
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
|
|
4307
|
+
tracks: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
|
|
4308
|
+
internetAccounts: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
|
|
4309
|
+
connections: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
|
|
4310
|
+
aggregateTextSearchAdapters: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
|
|
4466
4311
|
plugins: any;
|
|
4467
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4312
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4468
4313
|
readonly assemblies: ({
|
|
4469
4314
|
[x: string]: any;
|
|
4470
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4315
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4471
4316
|
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4472
4317
|
[x: string]: any;
|
|
4473
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject &
|
|
4474
|
-
|
|
4475
|
-
[x: string]: any;
|
|
4476
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4477
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4478
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
4318
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4319
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
4479
4320
|
readonly assemblyName: string;
|
|
4480
4321
|
readonly rpcManager: any;
|
|
4481
|
-
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
4482
|
-
configuration: import("
|
|
4483
|
-
rpc: import("
|
|
4322
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
|
|
4323
|
+
configuration: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
4324
|
+
rpc: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
4484
4325
|
defaultDriver: {
|
|
4485
4326
|
type: string;
|
|
4486
4327
|
description: string;
|
|
4487
4328
|
defaultValue: string;
|
|
4488
4329
|
};
|
|
4489
|
-
drivers: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IMapType<import("mobx-state-tree").ITypeUnion<import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
|
|
4490
|
-
}, import("
|
|
4330
|
+
drivers: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").ITypeUnion<import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> | undefined, import("@jbrowse/mobx-state-tree").ModelSnapshotType<Record<string, any>>, ({} & Partial<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<Record<string, any>>> & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject) | undefined>>, [undefined]>;
|
|
4331
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
4491
4332
|
highResolutionScaling: {
|
|
4492
4333
|
type: string;
|
|
4493
4334
|
defaultValue: number;
|
|
4494
4335
|
};
|
|
4495
|
-
formatDetails: import("
|
|
4336
|
+
formatDetails: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
4496
4337
|
feature: {
|
|
4497
4338
|
type: string;
|
|
4498
4339
|
description: string;
|
|
@@ -4515,8 +4356,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4515
4356
|
defaultValue: number;
|
|
4516
4357
|
description: string;
|
|
4517
4358
|
};
|
|
4518
|
-
}, import("
|
|
4519
|
-
formatAbout: import("
|
|
4359
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
4360
|
+
formatAbout: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
4520
4361
|
config: {
|
|
4521
4362
|
type: string;
|
|
4522
4363
|
description: string;
|
|
@@ -4527,9 +4368,9 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4527
4368
|
type: string;
|
|
4528
4369
|
defaultValue: boolean;
|
|
4529
4370
|
};
|
|
4530
|
-
}, import("
|
|
4531
|
-
hierarchical: import("
|
|
4532
|
-
sort: import("
|
|
4371
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
4372
|
+
hierarchical: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
4373
|
+
sort: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
4533
4374
|
trackNames: {
|
|
4534
4375
|
type: string;
|
|
4535
4376
|
defaultValue: boolean;
|
|
@@ -4538,8 +4379,8 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4538
4379
|
type: string;
|
|
4539
4380
|
defaultValue: boolean;
|
|
4540
4381
|
};
|
|
4541
|
-
}, import("
|
|
4542
|
-
defaultCollapsed: import("
|
|
4382
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
4383
|
+
defaultCollapsed: import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaType<{
|
|
4543
4384
|
categoryNames: {
|
|
4544
4385
|
type: string;
|
|
4545
4386
|
defaultValue: never[];
|
|
@@ -4552,36 +4393,32 @@ export default function createModel(runtimePlugins: PluginConstructor[], makeWor
|
|
|
4552
4393
|
type: string;
|
|
4553
4394
|
defaultValue: boolean;
|
|
4554
4395
|
};
|
|
4555
|
-
}, import("
|
|
4556
|
-
}, import("
|
|
4396
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
4397
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
4557
4398
|
theme: {
|
|
4558
4399
|
type: string;
|
|
4559
4400
|
defaultValue: {};
|
|
4560
4401
|
};
|
|
4561
|
-
}, import("
|
|
4402
|
+
}, import("node_modules/@jbrowse/core/src/configuration/configurationSchema.ts").ConfigurationSchemaOptions<undefined, undefined>>;
|
|
4562
4403
|
assembly: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
4563
|
-
tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
4564
|
-
internetAccounts: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
4565
|
-
connections: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
4566
|
-
aggregateTextSearchAdapters: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
|
|
4567
|
-
plugins: import("mobx-state-tree").IType<any, any, any>;
|
|
4404
|
+
tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
|
|
4405
|
+
internetAccounts: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
|
|
4406
|
+
connections: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
|
|
4407
|
+
aggregateTextSearchAdapters: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>;
|
|
4408
|
+
plugins: import("@jbrowse/mobx-state-tree").IType<any, any, any>;
|
|
4568
4409
|
}, {
|
|
4569
4410
|
readonly assemblies: ({
|
|
4570
4411
|
[x: string]: any;
|
|
4571
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4412
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
4572
4413
|
setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
|
|
4573
4414
|
[x: string]: any;
|
|
4574
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject &
|
|
4575
|
-
|
|
4576
|
-
[x: string]: any;
|
|
4577
|
-
} & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4578
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4579
|
-
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
4415
|
+
} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
|
|
4416
|
+
} & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
4580
4417
|
readonly assemblyName: string;
|
|
4581
4418
|
readonly rpcManager: any;
|
|
4582
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
4419
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
|
|
4583
4420
|
readonly pluginManager: PluginManager;
|
|
4584
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
4421
|
+
}, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>;
|
|
4585
4422
|
pluginManager: PluginManager;
|
|
4586
4423
|
};
|
|
4587
4424
|
export type ViewStateModel = ReturnType<typeof createModel>['model'];
|