@jbrowse/react-app2 4.0.2 → 4.0.4

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Files changed (5) hide show
  1. package/esm/JBrowseApp/JBrowseApp.js +1 -1
  2. package/esm/sessionModel/index.d.ts +19 -5
  3. package/esm/version.d.ts +1 -1
  4. package/esm/version.js +1 -1
  5. package/package.json +33 -33
package/esm/JBrowseApp/JBrowseApp.js CHANGED
@@ -15,6 +15,6 @@ const JBrowseApp = observer(function JBrowseApp({ viewState, }) {
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  const { classes } = useStyles();
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  const session = viewState.session;
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  const theme = createJBrowseTheme(getConf(viewState.jbrowse, 'theme'));
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- return (_jsx(ThemeProvider, { theme: theme, children: _jsx("div", { className: classes.avoidParentStyle, children: _jsx(ScopedCssBaseline, { children: _jsx(Suspense, { fallback: _jsx(LoadingEllipses, {}), children: _jsx(App, { session: session }) }) }) }) }));
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+ return (_jsx(ThemeProvider, { theme: theme, children: _jsx("div", { className: classes.avoidParentStyle, children: _jsx(ScopedCssBaseline, { children: _jsx(Suspense, { fallback: _jsx(LoadingEllipses, {}), children: _jsx(App, { session: session }, session.id) }) }) }) }));
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  });
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  export default JBrowseApp;
package/esm/sessionModel/index.d.ts CHANGED
@@ -54,6 +54,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  } & {
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  dockviewLayout: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IType<import("dockview-core").SerializedDockview, import("dockview-core").SerializedDockview, import("dockview-core").SerializedDockview>>;
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  panelViewAssignments: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>, [undefined]>;
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+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/app-core").DockviewLayoutNode | undefined, import("@jbrowse/app-core").DockviewLayoutNode | undefined, import("@jbrowse/app-core").DockviewLayoutNode | undefined>;
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  activePanelId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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  } & {
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  focusedViewId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -1804,7 +1805,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  trackId: string;
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  };
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  }[];
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- readonly tracksById: Record<string, import("@jbrowse/core/configuration").AnyConfigurationModel>;
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+ getTracksById(): Record<string, import("@jbrowse/core/configuration").AnyConfigurationModel>;
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  } & {
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  addTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfiguration): any;
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  deleteTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
@@ -1871,6 +1872,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  } & {
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  setDockviewLayout(layout: import("dockview-core").SerializedDockview | undefined): void;
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  setActivePanelId(panelId: string | undefined): void;
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+ setInit(init: import("@jbrowse/app-core").DockviewLayoutNode | undefined): void;
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  assignViewToPanel(panelId: string, viewId: string): void;
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  removeViewFromPanel(viewId: string): void;
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  removePanel(panelId: string): void;
@@ -1988,6 +1990,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  sessionConnections: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
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  dockviewLayout: (import("dockview-core").SerializedDockview & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IType<import("dockview-core").SerializedDockview, import("dockview-core").SerializedDockview, import("dockview-core").SerializedDockview>>>) | undefined;
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  panelViewAssignments: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>, [undefined]>>;
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+ init: (import("@jbrowse/app-core").DockviewLayoutNode & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/app-core").DockviewLayoutNode | undefined, import("@jbrowse/app-core").DockviewLayoutNode | undefined, import("@jbrowse/app-core").DockviewLayoutNode | undefined>>) | undefined;
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  activePanelId: string | undefined;
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  focusedViewId: string | undefined;
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  sessionPlugins: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/PluginLoader").PluginDefinition & {
@@ -3741,7 +3744,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  trackId: string;
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  };
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  }[];
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- readonly tracksById: Record<string, import("@jbrowse/core/configuration").AnyConfigurationModel>;
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+ getTracksById(): Record<string, import("@jbrowse/core/configuration").AnyConfigurationModel>;
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  } & {
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  addTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfiguration): any;
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  deleteTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
@@ -3808,6 +3811,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  } & {
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  setDockviewLayout(layout: import("dockview-core").SerializedDockview | undefined): void;
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  setActivePanelId(panelId: string | undefined): void;
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+ setInit(init: import("@jbrowse/app-core").DockviewLayoutNode | undefined): void;
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  assignViewToPanel(panelId: string, viewId: string): void;
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  removeViewFromPanel(viewId: string): void;
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  removePanel(panelId: string): void;
@@ -3904,6 +3908,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  } & {
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  dockviewLayout: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IType<import("dockview-core").SerializedDockview, import("dockview-core").SerializedDockview, import("dockview-core").SerializedDockview>>;
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  panelViewAssignments: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>, [undefined]>;
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+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/app-core").DockviewLayoutNode | undefined, import("@jbrowse/app-core").DockviewLayoutNode | undefined, import("@jbrowse/app-core").DockviewLayoutNode | undefined>;
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  activePanelId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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  } & {
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  focusedViewId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -5654,7 +5659,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  trackId: string;
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  };
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  }[];
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- readonly tracksById: Record<string, import("@jbrowse/core/configuration").AnyConfigurationModel>;
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+ getTracksById(): Record<string, import("@jbrowse/core/configuration").AnyConfigurationModel>;
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  } & {
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  addTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfiguration): any;
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  deleteTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
@@ -5721,6 +5726,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  } & {
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  setDockviewLayout(layout: import("dockview-core").SerializedDockview | undefined): void;
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  setActivePanelId(panelId: string | undefined): void;
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+ setInit(init: import("@jbrowse/app-core").DockviewLayoutNode | undefined): void;
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  assignViewToPanel(panelId: string, viewId: string): void;
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  removeViewFromPanel(viewId: string): void;
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  removePanel(panelId: string): void;
@@ -5800,6 +5806,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  } & {
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  dockviewLayout: import("dockview-core").SerializedDockview | undefined;
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  panelViewAssignments: import("mobx").IKeyValueMap<string[]>;
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+ init: import("@jbrowse/app-core").DockviewLayoutNode | undefined;
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  activePanelId: string | undefined;
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  } & import("@jbrowse/mobx-state-tree")._NotCustomized>>>): any;
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  deleteSavedSession(id: string): any;
@@ -5876,6 +5883,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  sessionConnections: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IAnyModelType> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyModelType>>;
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  dockviewLayout: (import("dockview-core").SerializedDockview & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IType<import("dockview-core").SerializedDockview, import("dockview-core").SerializedDockview, import("dockview-core").SerializedDockview>>>) | undefined;
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  panelViewAssignments: import("@jbrowse/mobx-state-tree").IMSTMap<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>> & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>, [undefined]>>;
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+ init: (import("@jbrowse/app-core").DockviewLayoutNode & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/app-core").DockviewLayoutNode | undefined, import("@jbrowse/app-core").DockviewLayoutNode | undefined, import("@jbrowse/app-core").DockviewLayoutNode | undefined>>) | undefined;
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  activePanelId: string | undefined;
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  focusedViewId: string | undefined;
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  sessionPlugins: import("@jbrowse/mobx-state-tree").IMSTArray<import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/PluginLoader").PluginDefinition & {
@@ -7629,7 +7637,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  trackId: string;
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  };
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  }[];
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- readonly tracksById: Record<string, import("@jbrowse/core/configuration").AnyConfigurationModel>;
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+ getTracksById(): Record<string, import("@jbrowse/core/configuration").AnyConfigurationModel>;
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  } & {
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  addTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfiguration): any;
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  deleteTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
@@ -7696,6 +7704,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  } & {
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  setDockviewLayout(layout: import("dockview-core").SerializedDockview | undefined): void;
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  setActivePanelId(panelId: string | undefined): void;
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+ setInit(init: import("@jbrowse/app-core").DockviewLayoutNode | undefined): void;
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  assignViewToPanel(panelId: string, viewId: string): void;
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  removeViewFromPanel(viewId: string): void;
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  removePanel(panelId: string): void;
@@ -7792,6 +7801,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  } & {
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  dockviewLayout: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IType<import("dockview-core").SerializedDockview, import("dockview-core").SerializedDockview, import("dockview-core").SerializedDockview>>;
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  panelViewAssignments: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>, [undefined]>;
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+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/app-core").DockviewLayoutNode | undefined, import("@jbrowse/app-core").DockviewLayoutNode | undefined, import("@jbrowse/app-core").DockviewLayoutNode | undefined>;
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  activePanelId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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  } & {
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  focusedViewId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
@@ -9542,7 +9552,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  trackId: string;
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  };
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  }[];
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- readonly tracksById: Record<string, import("@jbrowse/core/configuration").AnyConfigurationModel>;
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+ getTracksById(): Record<string, import("@jbrowse/core/configuration").AnyConfigurationModel>;
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  } & {
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  addTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfiguration): any;
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  deleteTrackConf(trackConf: import("@jbrowse/core/configuration").AnyConfigurationModel): any;
@@ -9609,6 +9619,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  } & {
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  setDockviewLayout(layout: import("dockview-core").SerializedDockview | undefined): void;
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  setActivePanelId(panelId: string | undefined): void;
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+ setInit(init: import("@jbrowse/app-core").DockviewLayoutNode | undefined): void;
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  assignViewToPanel(panelId: string, viewId: string): void;
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  removeViewFromPanel(viewId: string): void;
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  removePanel(panelId: string): void;
@@ -9688,6 +9699,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  } & {
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  dockviewLayout: import("dockview-core").SerializedDockview | undefined;
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  panelViewAssignments: import("mobx").IKeyValueMap<string[]>;
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+ init: import("@jbrowse/app-core").DockviewLayoutNode | undefined;
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  activePanelId: string | undefined;
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  } & import("@jbrowse/mobx-state-tree")._NotCustomized>>>): any;
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  } & {
@@ -9735,6 +9747,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  } & {
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  dockviewLayout: import("dockview-core").SerializedDockview | undefined;
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  panelViewAssignments: import("mobx").IKeyValueMap<string[]>;
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+ init: import("@jbrowse/app-core").DockviewLayoutNode | undefined;
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  activePanelId: string | undefined;
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  } & import("@jbrowse/mobx-state-tree")._NotCustomized>, {
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  name: string;
@@ -9788,6 +9801,7 @@ export default function sessionModelFactory({ pluginManager, assemblyConfigSchem
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  } & {
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  dockviewLayout: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IType<import("dockview-core").SerializedDockview, import("dockview-core").SerializedDockview, import("dockview-core").SerializedDockview>>;
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  panelViewAssignments: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IMapType<import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").ISimpleType<string>>>, [undefined]>;
9804
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/app-core").DockviewLayoutNode | undefined, import("@jbrowse/app-core").DockviewLayoutNode | undefined, import("@jbrowse/app-core").DockviewLayoutNode | undefined>;
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  activePanelId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
9792
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  } & {
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  focusedViewId: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
package/esm/version.d.ts CHANGED
@@ -1 +1 @@
1
- export declare const version = "4.0.2";
1
+ export declare const version = "4.0.4";
package/esm/version.js CHANGED
@@ -1 +1 @@
1
- export const version = '4.0.2';
1
+ export const version = '4.0.4';
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
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  "name": "@jbrowse/react-app2",
3
- "version": "4.0.2",
3
+ "version": "4.0.4",
4
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  "description": "JBrowse 2 app React component",
5
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  "keywords": [
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  "jbrowse",
@@ -40,38 +40,38 @@
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  "mobx": "^6.15.0",
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  "mobx-react": "^9.2.1",
42
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  "pako-esm2": "^2.0.2",
43
- "@jbrowse/app-core": "^4.0.2",
44
- "@jbrowse/plugin-alignments": "^4.0.2",
45
- "@jbrowse/plugin-arc": "^4.0.2",
46
- "@jbrowse/plugin-bed": "^4.0.2",
47
- "@jbrowse/plugin-authentication": "^4.0.2",
48
- "@jbrowse/core": "^4.0.2",
49
- "@jbrowse/plugin-canvas": "^4.0.2",
50
- "@jbrowse/plugin-breakpoint-split-view": "^4.0.2",
51
- "@jbrowse/plugin-circular-view": "^4.0.2",
52
- "@jbrowse/plugin-comparative-adapters": "^4.0.2",
53
- "@jbrowse/plugin-config": "^4.0.2",
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- "@jbrowse/plugin-data-management": "^4.0.2",
55
- "@jbrowse/plugin-gccontent": "^4.0.2",
56
- "@jbrowse/plugin-gff3": "^4.0.2",
57
- "@jbrowse/plugin-grid-bookmark": "^4.0.2",
58
- "@jbrowse/plugin-gtf": "^4.0.2",
59
- "@jbrowse/plugin-hic": "^4.0.2",
60
- "@jbrowse/plugin-dotplot-view": "^4.0.2",
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- "@jbrowse/plugin-legacy-jbrowse": "^4.0.2",
62
- "@jbrowse/plugin-linear-comparative-view": "^4.0.2",
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- "@jbrowse/plugin-linear-genome-view": "^4.0.2",
64
- "@jbrowse/plugin-lollipop": "^4.0.2",
65
- "@jbrowse/plugin-rdf": "^4.0.2",
66
- "@jbrowse/plugin-sequence": "^4.0.2",
67
- "@jbrowse/plugin-spreadsheet-view": "^4.0.2",
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- "@jbrowse/plugin-menus": "^4.0.2",
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- "@jbrowse/plugin-variants": "^4.0.2",
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- "@jbrowse/plugin-trix": "^4.0.2",
71
- "@jbrowse/plugin-wiggle": "^4.0.2",
72
- "@jbrowse/product-core": "^4.0.2",
73
- "@jbrowse/web-core": "^4.0.2",
74
- "@jbrowse/plugin-sv-inspector": "^4.0.2"
43
+ "@jbrowse/app-core": "^4.0.4",
44
+ "@jbrowse/plugin-alignments": "^4.0.4",
45
+ "@jbrowse/plugin-breakpoint-split-view": "^4.0.4",
46
+ "@jbrowse/plugin-authentication": "^4.0.4",
47
+ "@jbrowse/core": "^4.0.4",
48
+ "@jbrowse/plugin-arc": "^4.0.4",
49
+ "@jbrowse/plugin-bed": "^4.0.4",
50
+ "@jbrowse/plugin-canvas": "^4.0.4",
51
+ "@jbrowse/plugin-config": "^4.0.4",
52
+ "@jbrowse/plugin-circular-view": "^4.0.4",
53
+ "@jbrowse/plugin-comparative-adapters": "^4.0.4",
54
+ "@jbrowse/plugin-data-management": "^4.0.4",
55
+ "@jbrowse/plugin-dotplot-view": "^4.0.4",
56
+ "@jbrowse/plugin-gccontent": "^4.0.4",
57
+ "@jbrowse/plugin-gff3": "^4.0.4",
58
+ "@jbrowse/plugin-grid-bookmark": "^4.0.4",
59
+ "@jbrowse/plugin-gtf": "^4.0.4",
60
+ "@jbrowse/plugin-legacy-jbrowse": "^4.0.4",
61
+ "@jbrowse/plugin-hic": "^4.0.4",
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+ "@jbrowse/plugin-linear-comparative-view": "^4.0.4",
63
+ "@jbrowse/plugin-linear-genome-view": "^4.0.4",
64
+ "@jbrowse/plugin-lollipop": "^4.0.4",
65
+ "@jbrowse/plugin-menus": "^4.0.4",
66
+ "@jbrowse/plugin-rdf": "^4.0.4",
67
+ "@jbrowse/plugin-sequence": "^4.0.4",
68
+ "@jbrowse/plugin-spreadsheet-view": "^4.0.4",
69
+ "@jbrowse/plugin-sv-inspector": "^4.0.4",
70
+ "@jbrowse/plugin-trix": "^4.0.4",
71
+ "@jbrowse/plugin-variants": "^4.0.4",
72
+ "@jbrowse/product-core": "^4.0.4",
73
+ "@jbrowse/web-core": "^4.0.4",
74
+ "@jbrowse/plugin-wiggle": "^4.0.4"
75
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  },
76
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  "peerDependencies": {
77
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  "react": ">=18.0.0"