@jbrowse/product-core 5.0.0-beta.11 → 5.0.0-beta.13

package/esm/ui/aboutTestUtils.d.ts

@@ -23,12 +23,47 @@ export declare const TestTrackConf: import("@jbrowse/core/configuration/configur
         } & {
             defaultValue: unknown;
         };
+        readonly baiLocation: {
+            type: "fileLocation";
+        } & {
+            defaultValue: unknown;
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>, any>>;
     readonly metadata: {
         type: "frozen";
     } & {
         defaultValue: unknown;
     };
+    readonly textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        readonly searchLabel: {
+            type: "string";
+        } & {
+            defaultValue: string;
+        };
+        readonly indexingAttributes: {
+            type: "stringArray";
+        } & {
+            defaultValue: unknown;
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>, any>>;
+    readonly formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        readonly feature: {
+            type: "frozen";
+        } & {
+            defaultValue: unknown;
+        };
+        readonly subfeatures: {
+            type: "frozen";
+        } & {
+            defaultValue: unknown;
+        };
+        readonly depth: {
+            type: "maybeNumber";
+        };
+        readonly maxDepth: {
+            type: "maybeNumber";
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>, any>>;
     readonly formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         readonly config: {
             type: "frozen";
@@ -69,12 +104,47 @@ export declare function makeTrackConf(snapshot: SnapshotIn<typeof TestTrackConf>
         } & {
             defaultValue: unknown;
         };
+        readonly baiLocation: {
+            type: "fileLocation";
+        } & {
+            defaultValue: unknown;
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>, any>>;
     readonly metadata: {
         type: "frozen";
     } & {
         defaultValue: unknown;
     };
+    readonly textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        readonly searchLabel: {
+            type: "string";
+        } & {
+            defaultValue: string;
+        };
+        readonly indexingAttributes: {
+            type: "stringArray";
+        } & {
+            defaultValue: unknown;
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>, any>>;
+    readonly formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        readonly feature: {
+            type: "frozen";
+        } & {
+            defaultValue: unknown;
+        };
+        readonly subfeatures: {
+            type: "frozen";
+        } & {
+            defaultValue: unknown;
+        };
+        readonly depth: {
+            type: "maybeNumber";
+        };
+        readonly maxDepth: {
+            type: "maybeNumber";
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>, any>>;
     readonly formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         readonly config: {
             type: "frozen";
@@ -114,12 +184,47 @@ export declare function makeTrackConf(snapshot: SnapshotIn<typeof TestTrackConf>
         } & {
             defaultValue: unknown;
         };
+        readonly baiLocation: {
+            type: "fileLocation";
+        } & {
+            defaultValue: unknown;
+        };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>, any>>;
     readonly metadata: {
         type: "frozen";
     } & {
         defaultValue: unknown;
     };
+    readonly textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        readonly searchLabel: {
+            type: "string";
+        } & {
+            defaultValue: string;
+        };
+        readonly indexingAttributes: {
+            type: "stringArray";
+        } & {
+            defaultValue: unknown;
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>, any>>;
+    readonly formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        readonly feature: {
+            type: "frozen";
+        } & {
+            defaultValue: unknown;
+        };
+        readonly subfeatures: {
+            type: "frozen";
+        } & {
+            defaultValue: unknown;
+        };
+        readonly depth: {
+            type: "maybeNumber";
+        };
+        readonly maxDepth: {
+            type: "maybeNumber";
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined, undefined, import("@jbrowse/core/configuration").ConfigurationSchemaRequirement<Partial<Record<string, string[]>>, string>, any>>;
     readonly formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         readonly config: {
             type: "frozen";

package/esm/ui/aboutTestUtils.js

@@ -1,5 +1,5 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-import { ConfigurationSchema, FormatAboutConfigSchemaFactory, } from '@jbrowse/core/configuration';
+import { ConfigurationSchema, FormatAboutConfigSchemaFactory, FormatDetailsConfigSchemaFactory, } from '@jbrowse/core/configuration';
 // a real PluginManager provides the jexl instance a callback slot evaluates with
 export const aboutTestPluginManager = new PluginManager([]).createPluggableElements();
 aboutTestPluginManager.configure();
@@ -14,8 +14,22 @@ export const TestTrackConf = ConfigurationSchema('TestTrack', {
             type: 'fileLocation',
             defaultValue: { uri: '', locationType: 'UriLocation' },
         },
+        baiLocation: {
+            type: 'fileLocation',
+            defaultValue: { uri: '', locationType: 'UriLocation' },
+            advanced: true,
+        },
     }),
     metadata: { type: 'frozen', defaultValue: {} },
+    textSearching: ConfigurationSchema('TestTextSearching', {
+        searchLabel: { type: 'string', defaultValue: '' },
+        indexingAttributes: {
+            type: 'stringArray',
+            defaultValue: [],
+            advanced: true,
+        },
+    }),
+    formatDetails: FormatDetailsConfigSchemaFactory(),
     formatAbout: FormatAboutConfigSchemaFactory(),
 }, { explicitIdentifier: 'trackId' });
 export function makeTrackConf(snapshot) {

package/esm/ui/preferencesReset.d.ts

@@ -6,9 +6,6 @@ export interface ResettablePreferencesSession {
     setThemeMode: (arg: 'light' | 'dark' | 'system') => void;
     stickyViewHeaders: boolean;
     setStickyViewHeaders: (sticky: boolean) => void;
-    effectiveUseWorkspaces: boolean;
-    defaultUseWorkspaces: boolean;
-    resetUseWorkspaces: () => void;
     clearPreferenceOverrides: () => void;
     clearPreferenceOverride: (key: string) => void;
     getPreferenceChanges: () => TrackConfigChange[];

package/esm/ui/preferencesReset.js

@@ -26,19 +26,6 @@ const NON_MAP_PREFERENCES = [
             s.setStickyViewHeaders(true);
         },
     },
-    {
-        head: 'useWorkspaces',
-        change: s => s.effectiveUseWorkspaces === s.defaultUseWorkspaces
-            ? undefined
-            : {
-                path: ['useWorkspaces'],
-                from: s.defaultUseWorkspaces,
-                to: s.effectiveUseWorkspaces,
-            },
-        reset: s => {
-            s.resetUseWorkspaces();
-        },
-    },
 ];
 const NON_MAP_HEADS = new Set(NON_MAP_PREFERENCES.map(p => p.head));
 // Everything "Reset to defaults" reverts, as rows: the scalar overrides in the

package/esm/ui/util.d.ts

@@ -12,19 +12,18 @@ declare module '@jbrowse/core/PluginManager' {
         'Core-replaceAbout': ComponentSlot<AboutPanelProps>;
     }
 }
-/**
- * What a track's About dialog shows: the config with the session's and the
- * track's `formatAbout` callbacks merged over it, plus the resolved `hideUris`.
- * The two slots fold differently on purpose: `config` is a merge the track can
- * win key-by-key, `hideUris` an OR a track cannot turn back off.
- */
+/** About's two cards and `hideUris`, plus the raw `conf` Copy config copies. */
 export declare function getAboutDialogConfig({ config, session, }: {
     config: AnyConfigurationModel;
     session: AbstractSessionModel;
 }): {
+    conf: Record<string, unknown>;
     config: {
         [key: string]: unknown;
         metadata?: Record<string, unknown>;
     };
+    advanced: {
+        [k: string]: unknown;
+    };
     hideUris: boolean;
 };

package/esm/ui/util.js

@@ -1,19 +1,16 @@
-import { getConf, mergeFormatCallbacks, readConfObject, } from '@jbrowse/core/configuration';
+import { getConf, mergeFormatCallbacks, partitionAdvanced, readConfObject, } from '@jbrowse/core/configuration';
 // #endregion
-/**
- * What a track's About dialog shows: the config with the session's and the
- * track's `formatAbout` callbacks merged over it, plus the resolved `hideUris`.
- * The two slots fold differently on purpose: `config` is a merge the track can
- * win key-by-key, `hideUris` an OR a track cannot turn back off.
- */
+/** About's two cards and `hideUris`, plus the raw `conf` Copy config copies. */
 export function getAboutDialogConfig({ config, session, }) {
     const conf = readConfObject(config);
-    const shown = {
-        ...conf,
-        ...mergeFormatCallbacks(getConf(session, ['formatAbout', 'config'], { config: conf }), readConfObject(config, ['formatAbout', 'config'], { config: conf })),
-    };
+    const edits = mergeFormatCallbacks(getConf(session, ['formatAbout', 'config'], { config: conf }), readConfObject(config, ['formatAbout', 'config'], { config: conf }));
+    const split = partitionAdvanced(config, conf);
+    const shown = { ...split.rest, ...edits };
+    const advanced = Object.fromEntries(Object.entries(split.advanced).filter(([key]) => !(key in edits)));
     return {
+        conf,
         config: shown,
+        advanced,
         hideUris: Boolean(getConf(session, ['formatAbout', 'hideUris']) ||
             readConfObject(config, ['formatAbout', 'hideUris'])),
     };

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/product-core",
-  "version": "5.0.0-beta.11",
+  "version": "5.0.0-beta.13",
   "type": "module",
   "sideEffects": false,
   "description": "JBrowse 2 code shared between products but not used by plugins",
@@ -31,10 +31,10 @@
     "@jbrowse/mobx-state-tree": "^6.7.0",
     "@mui/icons-material": "^9.4.0",
     "@mui/material": "^9.4.0",
-    "mobx": "^7.0.5",
+    "mobx": "^7.0.6",
     "mobx-react": "^10.0.2",
-    "@jbrowse/render-core": "^5.0.0-beta.11",
-    "@jbrowse/core": "^5.0.0-beta.11"
+    "@jbrowse/render-core": "^5.0.0-beta.13",
+    "@jbrowse/core": "^5.0.0-beta.13"
   },
   "peerDependencies": {
     "react": ">=19.0.0",