@jbrowse/product-core 3.7.0 → 4.0.1

package/dist/RootModel/BaseRootModel.d.ts

@@ -1,534 +0,0 @@
-import TextSearchManager from '@jbrowse/core/TextSearch/TextSearchManager';
-import RpcManager from '@jbrowse/core/rpc/RpcManager';
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { BaseAssemblyConfigSchema } from '@jbrowse/core/assemblyManager';
-import type { IAnyType, Instance, SnapshotIn } from 'mobx-state-tree';
-export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType, sessionModelType, assemblyConfigSchema, }: {
-    pluginManager: PluginManager;
-    jbrowseModelType: IAnyType;
-    sessionModelType: IAnyType;
-    assemblyConfigSchema: BaseAssemblyConfigSchema;
-}): import("mobx-state-tree").IModelType<{
-    jbrowse: IAnyType;
-    session: import("mobx-state-tree").IMaybe<IAnyType>;
-    sessionPath: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    assemblyManager: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
-        assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
-        }, {
-            error: unknown;
-            loadingP: Promise<void> | undefined;
-            volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            refNameAliases: {
-                [x: string]: string;
-            } | undefined;
-            cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-        } & {
-            getConf(arg: string): any;
-            readonly lowerCaseRefNameAliases: {
-                [k: string]: string;
-            } | undefined;
-        } & {
-            readonly initialized: boolean;
-            readonly name: string;
-            readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            readonly aliases: string[];
-            readonly displayName: string;
-            hasName(name: string): boolean;
-            readonly allAliases: string[];
-            readonly allRefNames: string[] | undefined;
-            readonly lowerCaseRefNames: string[] | undefined;
-            readonly allRefNamesWithLowerCase: string[] | undefined;
-            readonly rpcManager: RpcManager;
-            readonly refNameColors: string[];
-        } & {
-            readonly refNames: string[] | undefined;
-        } & {
-            getCanonicalRefName(refName: string): string | undefined;
-            getCanonicalRefName2(asmName: string): string;
-            getRefNameColor(refName: string): string | undefined;
-            isValidRefName(refName: string): boolean;
-        } & {
-            setLoaded({ regions, refNameAliases, cytobands, }: {
-                regions: import("@jbrowse/core/util").Region[];
-                refNameAliases: {
-                    [x: string]: string;
-                };
-                cytobands: import("@jbrowse/core/util").Feature[];
-            }): void;
-            setError(e: unknown): void;
-            setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-            setRefNameAliases(aliases: {
-                [x: string]: string;
-            }): void;
-            setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void>): void;
-            load(): Promise<void>;
-            loadPre(): Promise<void>;
-        } & {
-            getAdapterMapEntry(adapterConf: {
-                [x: string]: unknown;
-            }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-            getRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string;
-            }>;
-            getReverseRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string;
-            }>;
-            afterCreate(): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    }, {
-        readonly assemblyNameMap: Record<string, {
-            configuration: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            error: unknown;
-            loadingP: Promise<void> | undefined;
-            volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            refNameAliases: {
-                [x: string]: string;
-            } | undefined;
-            cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-        } & {
-            getConf(arg: string): any;
-            readonly lowerCaseRefNameAliases: {
-                [k: string]: string;
-            } | undefined;
-        } & {
-            readonly initialized: boolean;
-            readonly name: string;
-            readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            readonly aliases: string[];
-            readonly displayName: string;
-            hasName(name: string): boolean;
-            readonly allAliases: string[];
-            readonly allRefNames: string[] | undefined;
-            readonly lowerCaseRefNames: string[] | undefined;
-            readonly allRefNamesWithLowerCase: string[] | undefined;
-            readonly rpcManager: RpcManager;
-            readonly refNameColors: string[];
-        } & {
-            readonly refNames: string[] | undefined;
-        } & {
-            getCanonicalRefName(refName: string): string | undefined;
-            getCanonicalRefName2(asmName: string): string;
-            getRefNameColor(refName: string): string | undefined;
-            isValidRefName(refName: string): boolean;
-        } & {
-            setLoaded({ regions, refNameAliases, cytobands, }: {
-                regions: import("@jbrowse/core/util").Region[];
-                refNameAliases: {
-                    [x: string]: string;
-                };
-                cytobands: import("@jbrowse/core/util").Feature[];
-            }): void;
-            setError(e: unknown): void;
-            setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-            setRefNameAliases(aliases: {
-                [x: string]: string;
-            }): void;
-            setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void>): void;
-            load(): Promise<void>;
-            loadPre(): Promise<void>;
-        } & {
-            getAdapterMapEntry(adapterConf: {
-                [x: string]: unknown;
-            }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-            getRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string;
-            }>;
-            getReverseRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string;
-            }>;
-            afterCreate(): void;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
-        }, {
-            error: unknown;
-            loadingP: Promise<void> | undefined;
-            volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            refNameAliases: {
-                [x: string]: string;
-            } | undefined;
-            cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-        } & {
-            getConf(arg: string): any;
-            readonly lowerCaseRefNameAliases: {
-                [k: string]: string;
-            } | undefined;
-        } & {
-            readonly initialized: boolean;
-            readonly name: string;
-            readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            readonly aliases: string[];
-            readonly displayName: string;
-            hasName(name: string): boolean;
-            readonly allAliases: string[];
-            readonly allRefNames: string[] | undefined;
-            readonly lowerCaseRefNames: string[] | undefined;
-            readonly allRefNamesWithLowerCase: string[] | undefined;
-            readonly rpcManager: RpcManager;
-            readonly refNameColors: string[];
-        } & {
-            readonly refNames: string[] | undefined;
-        } & {
-            getCanonicalRefName(refName: string): string | undefined;
-            getCanonicalRefName2(asmName: string): string;
-            getRefNameColor(refName: string): string | undefined;
-            isValidRefName(refName: string): boolean;
-        } & {
-            setLoaded({ regions, refNameAliases, cytobands, }: {
-                regions: import("@jbrowse/core/util").Region[];
-                refNameAliases: {
-                    [x: string]: string;
-                };
-                cytobands: import("@jbrowse/core/util").Feature[];
-            }): void;
-            setError(e: unknown): void;
-            setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-            setRefNameAliases(aliases: {
-                [x: string]: string;
-            }): void;
-            setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void>): void;
-            load(): Promise<void>;
-            loadPre(): Promise<void>;
-        } & {
-            getAdapterMapEntry(adapterConf: {
-                [x: string]: unknown;
-            }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-            getRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string;
-            }>;
-            getReverseRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string;
-            }>;
-            afterCreate(): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
-    } & {
-        getCanonicalAssemblyName(asmName: string): string | undefined;
-        getCanonicalAssemblyName2(asmName: string): string;
-        get(asmName: string): ({
-            configuration: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            error: unknown;
-            loadingP: Promise<void> | undefined;
-            volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            refNameAliases: {
-                [x: string]: string;
-            } | undefined;
-            cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-        } & {
-            getConf(arg: string): any;
-            readonly lowerCaseRefNameAliases: {
-                [k: string]: string;
-            } | undefined;
-        } & {
-            readonly initialized: boolean;
-            readonly name: string;
-            readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            readonly aliases: string[];
-            readonly displayName: string;
-            hasName(name: string): boolean;
-            readonly allAliases: string[];
-            readonly allRefNames: string[] | undefined;
-            readonly lowerCaseRefNames: string[] | undefined;
-            readonly allRefNamesWithLowerCase: string[] | undefined;
-            readonly rpcManager: RpcManager;
-            readonly refNameColors: string[];
-        } & {
-            readonly refNames: string[] | undefined;
-        } & {
-            getCanonicalRefName(refName: string): string | undefined;
-            getCanonicalRefName2(asmName: string): string;
-            getRefNameColor(refName: string): string | undefined;
-            isValidRefName(refName: string): boolean;
-        } & {
-            setLoaded({ regions, refNameAliases, cytobands, }: {
-                regions: import("@jbrowse/core/util").Region[];
-                refNameAliases: {
-                    [x: string]: string;
-                };
-                cytobands: import("@jbrowse/core/util").Feature[];
-            }): void;
-            setError(e: unknown): void;
-            setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-            setRefNameAliases(aliases: {
-                [x: string]: string;
-            }): void;
-            setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void>): void;
-            load(): Promise<void>;
-            loadPre(): Promise<void>;
-        } & {
-            getAdapterMapEntry(adapterConf: {
-                [x: string]: unknown;
-            }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-            getRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string;
-            }>;
-            getReverseRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string;
-            }>;
-            afterCreate(): void;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
-        }, {
-            error: unknown;
-            loadingP: Promise<void> | undefined;
-            volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            refNameAliases: {
-                [x: string]: string;
-            } | undefined;
-            cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-        } & {
-            getConf(arg: string): any;
-            readonly lowerCaseRefNameAliases: {
-                [k: string]: string;
-            } | undefined;
-        } & {
-            readonly initialized: boolean;
-            readonly name: string;
-            readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            readonly aliases: string[];
-            readonly displayName: string;
-            hasName(name: string): boolean;
-            readonly allAliases: string[];
-            readonly allRefNames: string[] | undefined;
-            readonly lowerCaseRefNames: string[] | undefined;
-            readonly allRefNamesWithLowerCase: string[] | undefined;
-            readonly rpcManager: RpcManager;
-            readonly refNameColors: string[];
-        } & {
-            readonly refNames: string[] | undefined;
-        } & {
-            getCanonicalRefName(refName: string): string | undefined;
-            getCanonicalRefName2(asmName: string): string;
-            getRefNameColor(refName: string): string | undefined;
-            isValidRefName(refName: string): boolean;
-        } & {
-            setLoaded({ regions, refNameAliases, cytobands, }: {
-                regions: import("@jbrowse/core/util").Region[];
-                refNameAliases: {
-                    [x: string]: string;
-                };
-                cytobands: import("@jbrowse/core/util").Feature[];
-            }): void;
-            setError(e: unknown): void;
-            setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-            setRefNameAliases(aliases: {
-                [x: string]: string;
-            }): void;
-            setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void>): void;
-            load(): Promise<void>;
-            loadPre(): Promise<void>;
-        } & {
-            getAdapterMapEntry(adapterConf: {
-                [x: string]: unknown;
-            }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-            getRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string;
-            }>;
-            getReverseRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string;
-            }>;
-            afterCreate(): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
-        readonly assemblyNamesList: any[];
-        readonly assemblyList: import("@jbrowse/core/configuration").AnyConfigurationModel[];
-        readonly rpcManager: RpcManager;
-    } & {
-        waitForAssembly(assemblyName: string): Promise<({
-            configuration: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            error: unknown;
-            loadingP: Promise<void> | undefined;
-            volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            refNameAliases: {
-                [x: string]: string;
-            } | undefined;
-            cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-        } & {
-            getConf(arg: string): any;
-            readonly lowerCaseRefNameAliases: {
-                [k: string]: string;
-            } | undefined;
-        } & {
-            readonly initialized: boolean;
-            readonly name: string;
-            readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            readonly aliases: string[];
-            readonly displayName: string;
-            hasName(name: string): boolean;
-            readonly allAliases: string[];
-            readonly allRefNames: string[] | undefined;
-            readonly lowerCaseRefNames: string[] | undefined;
-            readonly allRefNamesWithLowerCase: string[] | undefined;
-            readonly rpcManager: RpcManager;
-            readonly refNameColors: string[];
-        } & {
-            readonly refNames: string[] | undefined;
-        } & {
-            getCanonicalRefName(refName: string): string | undefined;
-            getCanonicalRefName2(asmName: string): string;
-            getRefNameColor(refName: string): string | undefined;
-            isValidRefName(refName: string): boolean;
-        } & {
-            setLoaded({ regions, refNameAliases, cytobands, }: {
-                regions: import("@jbrowse/core/util").Region[];
-                refNameAliases: {
-                    [x: string]: string;
-                };
-                cytobands: import("@jbrowse/core/util").Feature[];
-            }): void;
-            setError(e: unknown): void;
-            setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-            setRefNameAliases(aliases: {
-                [x: string]: string;
-            }): void;
-            setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void>): void;
-            load(): Promise<void>;
-            loadPre(): Promise<void>;
-        } & {
-            getAdapterMapEntry(adapterConf: {
-                [x: string]: unknown;
-            }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-            getRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string;
-            }>;
-            getReverseRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string;
-            }>;
-            afterCreate(): void;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
-        }, {
-            error: unknown;
-            loadingP: Promise<void> | undefined;
-            volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            refNameAliases: {
-                [x: string]: string;
-            } | undefined;
-            cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-        } & {
-            getConf(arg: string): any;
-            readonly lowerCaseRefNameAliases: {
-                [k: string]: string;
-            } | undefined;
-        } & {
-            readonly initialized: boolean;
-            readonly name: string;
-            readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-            readonly aliases: string[];
-            readonly displayName: string;
-            hasName(name: string): boolean;
-            readonly allAliases: string[];
-            readonly allRefNames: string[] | undefined;
-            readonly lowerCaseRefNames: string[] | undefined;
-            readonly allRefNamesWithLowerCase: string[] | undefined;
-            readonly rpcManager: RpcManager;
-            readonly refNameColors: string[];
-        } & {
-            readonly refNames: string[] | undefined;
-        } & {
-            getCanonicalRefName(refName: string): string | undefined;
-            getCanonicalRefName2(asmName: string): string;
-            getRefNameColor(refName: string): string | undefined;
-            isValidRefName(refName: string): boolean;
-        } & {
-            setLoaded({ regions, refNameAliases, cytobands, }: {
-                regions: import("@jbrowse/core/util").Region[];
-                refNameAliases: {
-                    [x: string]: string;
-                };
-                cytobands: import("@jbrowse/core/util").Feature[];
-            }): void;
-            setError(e: unknown): void;
-            setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-            setRefNameAliases(aliases: {
-                [x: string]: string;
-            }): void;
-            setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-            setLoadingP(p?: Promise<void>): void;
-            load(): Promise<void>;
-            loadPre(): Promise<void>;
-        } & {
-            getAdapterMapEntry(adapterConf: {
-                [x: string]: unknown;
-            }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-            getRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string;
-            }>;
-            getReverseRefNameMapForAdapter(adapterConf: {
-                [x: string]: unknown;
-            }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string;
-            }>;
-            afterCreate(): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
-        getRefNameMapForAdapter(adapterConf: {
-            [x: string]: unknown;
-        }, assemblyName: string | undefined, opts: {
-            stopToken?: string;
-            sessionId: string;
-        }): Promise<{
-            [x: string]: string;
-        } | undefined>;
-        getReverseRefNameMapForAdapter(adapterConf: {
-            [x: string]: unknown;
-        }, assemblyName: string | undefined, opts: {
-            stopToken?: string;
-            sessionId: string;
-        }): Promise<{
-            [x: string]: string;
-        } | undefined>;
-        isValidRefName(refName: string, assemblyName: string): boolean;
-    } & {
-        afterAttach(): void;
-        removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
-        addAssembly(configuration: any): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
-}, {
-    rpcManager: RpcManager;
-    adminMode: boolean;
-    error: unknown;
-    textSearchManager: TextSearchManager;
-    pluginManager: PluginManager;
-} & {
-    setError(error: unknown): void;
-    setSession(sessionSnapshot?: SnapshotIn<IAnyType>): void;
-    setDefaultSession(): void;
-    setSessionPath(path: string): void;
-    renameCurrentSession(newName: string): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export type BaseRootModelType = ReturnType<typeof BaseRootModelFactory>;
-export type BaseRootModel = Instance<BaseRootModelType>;
-export declare function isRootModel(thing: unknown): thing is BaseRootModelType;

package/dist/RootModel/BaseRootModel.js

@@ -1,57 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.BaseRootModelFactory = BaseRootModelFactory;
-exports.isRootModel = isRootModel;
-const TextSearchManager_1 = __importDefault(require("@jbrowse/core/TextSearch/TextSearchManager"));
-const assemblyManager_1 = __importDefault(require("@jbrowse/core/assemblyManager"));
-const RpcManager_1 = __importDefault(require("@jbrowse/core/rpc/RpcManager"));
-const mobx_state_tree_1 = require("mobx-state-tree");
-function BaseRootModelFactory({ pluginManager, jbrowseModelType, sessionModelType, assemblyConfigSchema, }) {
-    return mobx_state_tree_1.types
-        .model('BaseRootModel', {
-        jbrowse: jbrowseModelType,
-        session: mobx_state_tree_1.types.maybe(sessionModelType),
-        sessionPath: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.string, ''),
-        assemblyManager: mobx_state_tree_1.types.optional((0, assemblyManager_1.default)(assemblyConfigSchema, pluginManager), {}),
-    })
-        .volatile(self => ({
-        rpcManager: new RpcManager_1.default(pluginManager, self.jbrowse.configuration.rpc, {
-            MainThreadRpcDriver: {},
-        }),
-        adminMode: false,
-        error: undefined,
-        textSearchManager: new TextSearchManager_1.default(pluginManager),
-        pluginManager,
-    }))
-        .actions(self => ({
-        setError(error) {
-            self.error = error;
-        },
-        setSession(sessionSnapshot) {
-            self.session = (0, mobx_state_tree_1.cast)(sessionSnapshot);
-        },
-        setDefaultSession() {
-            this.setSession(self.jbrowse.defaultSession);
-        },
-        setSessionPath(path) {
-            self.sessionPath = path;
-        },
-        renameCurrentSession(newName) {
-            if (self.session) {
-                this.setSession({
-                    ...(0, mobx_state_tree_1.getSnapshot)(self.session),
-                    name: newName,
-                });
-            }
-        },
-    }));
-}
-function isRootModel(thing) {
-    return ((0, mobx_state_tree_1.isStateTreeNode)(thing) &&
-        'session' in thing &&
-        'jbrowse' in thing &&
-        'assemblyManager' in thing);
-}

package/dist/RootModel/FormatAbout.d.ts

@@ -1,12 +0,0 @@
-export declare function FormatAboutConfigSchemaFactory(): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    config: {
-        type: string;
-        description: string;
-        defaultValue: {};
-        contextVariable: string[];
-    };
-    hideUris: {
-        type: string;
-        defaultValue: boolean;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;

package/dist/RootModel/FormatAbout.js

@@ -1,18 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.FormatAboutConfigSchemaFactory = FormatAboutConfigSchemaFactory;
-const configuration_1 = require("@jbrowse/core/configuration");
-function FormatAboutConfigSchemaFactory() {
-    return (0, configuration_1.ConfigurationSchema)('FormatAbout', {
-        config: {
-            type: 'frozen',
-            description: 'formats configuration object in about dialog',
-            defaultValue: {},
-            contextVariable: ['config'],
-        },
-        hideUris: {
-            type: 'boolean',
-            defaultValue: false,
-        },
-    });
-}

package/dist/RootModel/FormatDetails.d.ts

@@ -1,24 +0,0 @@
-export declare function FormatDetailsConfigSchemaFactory(): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    feature: {
-        type: string;
-        description: string;
-        defaultValue: {};
-        contextVariable: string[];
-    };
-    subfeatures: {
-        type: string;
-        description: string;
-        defaultValue: {};
-        contextVariable: string[];
-    };
-    depth: {
-        type: string;
-        defaultValue: number;
-        description: string;
-    };
-    maxDepth: {
-        type: string;
-        defaultValue: number;
-        description: string;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;

package/dist/RootModel/FormatDetails.js

@@ -1,30 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.FormatDetailsConfigSchemaFactory = FormatDetailsConfigSchemaFactory;
-const configuration_1 = require("@jbrowse/core/configuration");
-function FormatDetailsConfigSchemaFactory() {
-    return (0, configuration_1.ConfigurationSchema)('FormatDetails', {
-        feature: {
-            type: 'frozen',
-            description: 'adds extra fields to the feature details',
-            defaultValue: {},
-            contextVariable: ['feature'],
-        },
-        subfeatures: {
-            type: 'frozen',
-            description: 'adds extra fields to the subfeatures of a feature',
-            defaultValue: {},
-            contextVariable: ['feature'],
-        },
-        depth: {
-            type: 'number',
-            defaultValue: 2,
-            description: 'depth to iterate the formatDetails->subfeatures callback on subfeatures (used for example to only apply the callback to the first layer of subfeatures)',
-        },
-        maxDepth: {
-            type: 'number',
-            defaultValue: 10000,
-            description: 'hide subfeatures greater than a certain depth',
-        },
-    });
-}