@jbrowse/product-core 3.3.0 → 3.5.0

package/dist/Session/MultipleViews.d.ts

@@ -1,7 +1,5 @@
 import type PluginManager from '@jbrowse/core/PluginManager';
 import type { IBaseViewModel } from '@jbrowse/core/pluggableElementTypes';
-import type { IBaseViewModelWithDisplayedRegions } from '@jbrowse/core/pluggableElementTypes/models/BaseViewModel';
-import type { Region } from '@jbrowse/core/util';
 import type { IAnyStateTreeNode, Instance } from 'mobx-state-tree';
 export declare function MultipleViewsSessionMixin(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -1735,11 +1733,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
     moveViewToBottom(id: string): void;
     addView(typeName: string, initialState?: {}): any;
     removeView(view: IBaseViewModel): void;
-    addLinearGenomeViewOfAssembly(assemblyName: string, initialState?: {}): any;
-    addViewOfAssembly(viewType: string, assemblyName: string, initialState?: Record<string, unknown>): any;
-    addViewFromAnotherView(viewType: string, otherView: IBaseViewModelWithDisplayedRegions, initialState?: {
-        displayedRegions?: Region[];
-    }): any;
     setStickyViewHeaders(sticky: boolean): void;
     afterAttach(): void;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/Session/MultipleViews.js

@@ -2,15 +2,11 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.MultipleViewsSessionMixin = MultipleViewsSessionMixin;
 exports.isSessionWithMultipleViews = isSessionWithMultipleViews;
-const configuration_1 = require("@jbrowse/core/configuration");
 const util_1 = require("@jbrowse/core/util");
 const mobx_1 = require("mobx");
 const mobx_state_tree_1 = require("mobx-state-tree");
 const BaseSession_1 = require("./BaseSession");
 const DrawerWidgets_1 = require("./DrawerWidgets");
-function localStorageSetBoolean(key, value) {
-    (0, util_1.localStorageSetItem)(key, JSON.stringify(value));
-}
 function MultipleViewsSessionMixin(pluginManager) {
     return mobx_state_tree_1.types
         .compose((0, BaseSession_1.BaseSessionModel)(pluginManager), (0, DrawerWidgets_1.DrawerWidgetSessionMixin)(pluginManager))
@@ -64,31 +60,12 @@ function MultipleViewsSessionMixin(pluginManager) {
             }
             self.views.remove(view);
         },
-        addLinearGenomeViewOfAssembly(assemblyName, initialState = {}) {
-            return this.addViewOfAssembly('LinearGenomeView', assemblyName, initialState);
-        },
-        addViewOfAssembly(viewType, assemblyName, initialState = {}) {
-            const asm = self.assemblies.find(s => (0, configuration_1.readConfObject)(s, 'name') === assemblyName);
-            if (!asm) {
-                throw new Error(`Could not add view of assembly "${assemblyName}", assembly name not found`);
-            }
-            return this.addView(viewType, {
-                ...initialState,
-                displayRegionsFromAssemblyName: (0, configuration_1.readConfObject)(asm, 'name'),
-            });
-        },
-        addViewFromAnotherView(viewType, otherView, initialState = {}) {
-            const state = { ...initialState };
-            state.displayedRegions = (0, mobx_state_tree_1.getSnapshot)(otherView.displayedRegions);
-            return this.addView(viewType, state);
-        },
         setStickyViewHeaders(sticky) {
             self.stickyViewHeaders = sticky;
-            localStorageSetBoolean('stickyViewHeaders', sticky);
         },
         afterAttach() {
             (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => {
-                localStorageSetBoolean('stickyViewHeaders', self.stickyViewHeaders);
+                (0, util_1.localStorageSetBoolean)('stickyViewHeaders', self.stickyViewHeaders);
             }));
         },
     }));

package/esm/Session/MultipleViews.d.ts

@@ -1,7 +1,5 @@
 import type PluginManager from '@jbrowse/core/PluginManager';
 import type { IBaseViewModel } from '@jbrowse/core/pluggableElementTypes';
-import type { IBaseViewModelWithDisplayedRegions } from '@jbrowse/core/pluggableElementTypes/models/BaseViewModel';
-import type { Region } from '@jbrowse/core/util';
 import type { IAnyStateTreeNode, Instance } from 'mobx-state-tree';
 export declare function MultipleViewsSessionMixin(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -1735,11 +1733,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
     moveViewToBottom(id: string): void;
     addView(typeName: string, initialState?: {}): any;
     removeView(view: IBaseViewModel): void;
-    addLinearGenomeViewOfAssembly(assemblyName: string, initialState?: {}): any;
-    addViewOfAssembly(viewType: string, assemblyName: string, initialState?: Record<string, unknown>): any;
-    addViewFromAnotherView(viewType: string, otherView: IBaseViewModelWithDisplayedRegions, initialState?: {
-        displayedRegions?: Region[];
-    }): any;
     setStickyViewHeaders(sticky: boolean): void;
     afterAttach(): void;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/esm/Session/MultipleViews.js

@@ -1,12 +1,8 @@
-import { readConfObject } from '@jbrowse/core/configuration';
-import { localStorageGetBoolean, localStorageSetItem } from '@jbrowse/core/util';
+import { localStorageGetBoolean, localStorageSetBoolean, } from '@jbrowse/core/util';
 import { autorun } from 'mobx';
-import { addDisposer, cast, getSnapshot, types } from 'mobx-state-tree';
+import { addDisposer, cast, types } from 'mobx-state-tree';
 import { BaseSessionModel, isBaseSession } from './BaseSession';
 import { DrawerWidgetSessionMixin } from './DrawerWidgets';
-function localStorageSetBoolean(key, value) {
-    localStorageSetItem(key, JSON.stringify(value));
-}
 export function MultipleViewsSessionMixin(pluginManager) {
     return types
         .compose(BaseSessionModel(pluginManager), DrawerWidgetSessionMixin(pluginManager))
@@ -60,27 +56,8 @@ export function MultipleViewsSessionMixin(pluginManager) {
             }
             self.views.remove(view);
         },
-        addLinearGenomeViewOfAssembly(assemblyName, initialState = {}) {
-            return this.addViewOfAssembly('LinearGenomeView', assemblyName, initialState);
-        },
-        addViewOfAssembly(viewType, assemblyName, initialState = {}) {
-            const asm = self.assemblies.find(s => readConfObject(s, 'name') === assemblyName);
-            if (!asm) {
-                throw new Error(`Could not add view of assembly "${assemblyName}", assembly name not found`);
-            }
-            return this.addView(viewType, {
-                ...initialState,
-                displayRegionsFromAssemblyName: readConfObject(asm, 'name'),
-            });
-        },
-        addViewFromAnotherView(viewType, otherView, initialState = {}) {
-            const state = { ...initialState };
-            state.displayedRegions = getSnapshot(otherView.displayedRegions);
-            return this.addView(viewType, state);
-        },
         setStickyViewHeaders(sticky) {
             self.stickyViewHeaders = sticky;
-            localStorageSetBoolean('stickyViewHeaders', sticky);
         },
         afterAttach() {
             addDisposer(self, autorun(() => {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/product-core",
-  "version": "3.3.0",
+  "version": "3.5.0",
   "sideEffects": false,
   "description": "JBrowse 2 code shared between products but not used by plugins",
   "keywords": [
@@ -43,7 +43,7 @@
   },
   "dependencies": {
     "@babel/runtime": "^7.16.3",
-    "@jbrowse/core": "^3.3.0",
+    "@jbrowse/core": "^3.5.0",
     "@mui/icons-material": "^7.0.0",
     "@mui/material": "^7.0.0",
     "copy-to-clipboard": "^3.3.1",
@@ -62,5 +62,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "0bb64d8cc7ecdd167515308b31eec3d9acbc59e4"
+  "gitHead": "8a8aa0aab2229dece106a5715a767e649e2fe92b"
 }