@jbrowse/product-core 2.9.0 → 2.10.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/RootModel/BaseRootModel.d.ts +102 -56
- package/dist/Session/BaseSession.d.ts +11 -3
- package/dist/Session/BaseSession.js +5 -1
- package/dist/Session/MultipleViews.d.ts +301 -110
- package/dist/Session/MultipleViews.js +3 -0
- package/dist/Session/SessionTracks.d.ts +285 -117
- package/dist/Session/Tracks.d.ts +304 -98
- package/esm/RootModel/BaseRootModel.d.ts +102 -56
- package/esm/Session/BaseSession.d.ts +11 -3
- package/esm/Session/BaseSession.js +5 -1
- package/esm/Session/MultipleViews.d.ts +301 -110
- package/esm/Session/MultipleViews.js +3 -0
- package/esm/Session/SessionTracks.d.ts +285 -117
- package/esm/Session/Tracks.d.ts +304 -98
- package/package.json +3 -3
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@@ -71,11 +71,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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}>;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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load(): Promise<void>;
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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load(): Promise<void>;
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loadPre(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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getRefNameMapForAdapter(adapterConf: {
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
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load(): Promise<void>;
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} & {
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getAdapterMapEntry(adapterConf: {
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}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
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}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
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}, assemblyName: string | undefined, opts: {
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}): Promise<{
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configuration: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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* #action
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getRefNameMapForAdapter(adapterConf: {
|
|
737
|
+
[x: string]: unknown;
|
|
738
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
676
739
|
[x: string]: string | undefined;
|
|
677
740
|
}>;
|
|
678
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
741
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
742
|
+
[x: string]: unknown;
|
|
743
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
679
744
|
[x: string]: string | undefined;
|
|
680
745
|
}>;
|
|
681
746
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
@@ -729,11 +794,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
729
794
|
load(): Promise<void>;
|
|
730
795
|
loadPre(): Promise<void>;
|
|
731
796
|
} & {
|
|
732
|
-
getAdapterMapEntry(adapterConf:
|
|
733
|
-
|
|
797
|
+
getAdapterMapEntry(adapterConf: {
|
|
798
|
+
[x: string]: unknown;
|
|
799
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
800
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
801
|
+
[x: string]: unknown;
|
|
802
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
734
803
|
[x: string]: string | undefined;
|
|
735
804
|
}>;
|
|
736
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
805
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
806
|
+
[x: string]: unknown;
|
|
807
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
737
808
|
[x: string]: string | undefined;
|
|
738
809
|
}>;
|
|
739
810
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -785,11 +856,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
785
856
|
load(): Promise<void>;
|
|
786
857
|
loadPre(): Promise<void>;
|
|
787
858
|
} & {
|
|
788
|
-
getAdapterMapEntry(adapterConf:
|
|
789
|
-
|
|
859
|
+
getAdapterMapEntry(adapterConf: {
|
|
860
|
+
[x: string]: unknown;
|
|
861
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
862
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
863
|
+
[x: string]: unknown;
|
|
864
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
790
865
|
[x: string]: string | undefined;
|
|
791
866
|
}>;
|
|
792
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
867
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
868
|
+
[x: string]: unknown;
|
|
869
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
793
870
|
[x: string]: string | undefined;
|
|
794
871
|
}>;
|
|
795
872
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
@@ -843,11 +920,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
843
920
|
load(): Promise<void>;
|
|
844
921
|
loadPre(): Promise<void>;
|
|
845
922
|
} & {
|
|
846
|
-
getAdapterMapEntry(adapterConf:
|
|
847
|
-
|
|
923
|
+
getAdapterMapEntry(adapterConf: {
|
|
924
|
+
[x: string]: unknown;
|
|
925
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
926
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
927
|
+
[x: string]: unknown;
|
|
928
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
848
929
|
[x: string]: string | undefined;
|
|
849
930
|
}>;
|
|
850
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
931
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
932
|
+
[x: string]: unknown;
|
|
933
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
851
934
|
[x: string]: string | undefined;
|
|
852
935
|
}>;
|
|
853
936
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -899,11 +982,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
899
982
|
load(): Promise<void>;
|
|
900
983
|
loadPre(): Promise<void>;
|
|
901
984
|
} & {
|
|
902
|
-
getAdapterMapEntry(adapterConf:
|
|
903
|
-
|
|
985
|
+
getAdapterMapEntry(adapterConf: {
|
|
986
|
+
[x: string]: unknown;
|
|
987
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
988
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
989
|
+
[x: string]: unknown;
|
|
990
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
904
991
|
[x: string]: string | undefined;
|
|
905
992
|
}>;
|
|
906
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
993
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
994
|
+
[x: string]: unknown;
|
|
995
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
907
996
|
[x: string]: string | undefined;
|
|
908
997
|
}>;
|
|
909
998
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
@@ -964,11 +1053,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
964
1053
|
load(): Promise<void>;
|
|
965
1054
|
loadPre(): Promise<void>;
|
|
966
1055
|
} & {
|
|
967
|
-
getAdapterMapEntry(adapterConf:
|
|
968
|
-
|
|
1056
|
+
getAdapterMapEntry(adapterConf: {
|
|
1057
|
+
[x: string]: unknown;
|
|
1058
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1059
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1060
|
+
[x: string]: unknown;
|
|
1061
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
969
1062
|
[x: string]: string | undefined;
|
|
970
1063
|
}>;
|
|
971
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1064
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1065
|
+
[x: string]: unknown;
|
|
1066
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
972
1067
|
[x: string]: string | undefined;
|
|
973
1068
|
}>;
|
|
974
1069
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1020,21 +1115,31 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
1020
1115
|
load(): Promise<void>;
|
|
1021
1116
|
loadPre(): Promise<void>;
|
|
1022
1117
|
} & {
|
|
1023
|
-
getAdapterMapEntry(adapterConf:
|
|
1024
|
-
|
|
1118
|
+
getAdapterMapEntry(adapterConf: {
|
|
1119
|
+
[x: string]: unknown;
|
|
1120
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1121
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1122
|
+
[x: string]: unknown;
|
|
1123
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1025
1124
|
[x: string]: string | undefined;
|
|
1026
1125
|
}>;
|
|
1027
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1126
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1127
|
+
[x: string]: unknown;
|
|
1128
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1028
1129
|
[x: string]: string | undefined;
|
|
1029
1130
|
}>;
|
|
1030
1131
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1031
|
-
getRefNameMapForAdapter(adapterConf:
|
|
1132
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1133
|
+
[x: string]: unknown;
|
|
1134
|
+
}, assemblyName: string | undefined, opts: {
|
|
1032
1135
|
signal?: AbortSignal | undefined;
|
|
1033
1136
|
sessionId: string;
|
|
1034
1137
|
}): Promise<{
|
|
1035
1138
|
[x: string]: string | undefined;
|
|
1036
1139
|
} | undefined>;
|
|
1037
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1140
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1141
|
+
[x: string]: unknown;
|
|
1142
|
+
}, assemblyName: string | undefined, opts: {
|
|
1038
1143
|
signal?: AbortSignal | undefined;
|
|
1039
1144
|
sessionId: string;
|
|
1040
1145
|
}): Promise<{
|
|
@@ -1047,9 +1152,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
1047
1152
|
configuration: any;
|
|
1048
1153
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1049
1154
|
error: unknown;
|
|
1050
|
-
loaded: boolean;
|
|
1051
|
-
* #action
|
|
1052
|
-
*/
|
|
1155
|
+
loaded: boolean;
|
|
1053
1156
|
loadingP: Promise<void> | undefined;
|
|
1054
1157
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1055
1158
|
refNameAliases: {
|
|
@@ -1094,20 +1197,26 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
1094
1197
|
load(): Promise<void>;
|
|
1095
1198
|
loadPre(): Promise<void>;
|
|
1096
1199
|
} & {
|
|
1097
|
-
getAdapterMapEntry(adapterConf:
|
|
1098
|
-
|
|
1200
|
+
getAdapterMapEntry(adapterConf: {
|
|
1201
|
+
[x: string]: unknown;
|
|
1202
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1203
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1204
|
+
[x: string]: unknown;
|
|
1205
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1099
1206
|
[x: string]: string | undefined;
|
|
1100
1207
|
}>;
|
|
1101
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1208
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1209
|
+
[x: string]: unknown;
|
|
1210
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1102
1211
|
[x: string]: string | undefined;
|
|
1103
1212
|
}>;
|
|
1104
1213
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1105
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1106
|
-
}, {
|
|
1107
|
-
error: unknown;
|
|
1108
|
-
loaded: boolean; /**
|
|
1214
|
+
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>; /**
|
|
1109
1215
|
* #action
|
|
1110
1216
|
*/
|
|
1217
|
+
}, {
|
|
1218
|
+
error: unknown;
|
|
1219
|
+
loaded: boolean;
|
|
1111
1220
|
loadingP: Promise<void> | undefined;
|
|
1112
1221
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1113
1222
|
refNameAliases: {
|
|
@@ -1152,11 +1261,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
1152
1261
|
load(): Promise<void>;
|
|
1153
1262
|
loadPre(): Promise<void>;
|
|
1154
1263
|
} & {
|
|
1155
|
-
getAdapterMapEntry(adapterConf:
|
|
1156
|
-
|
|
1264
|
+
getAdapterMapEntry(adapterConf: {
|
|
1265
|
+
[x: string]: unknown;
|
|
1266
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1267
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1268
|
+
[x: string]: unknown;
|
|
1269
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1157
1270
|
[x: string]: string | undefined;
|
|
1158
1271
|
}>;
|
|
1159
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1272
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1273
|
+
[x: string]: unknown;
|
|
1274
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1160
1275
|
[x: string]: string | undefined;
|
|
1161
1276
|
}>;
|
|
1162
1277
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|
|
@@ -1182,9 +1297,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
1182
1297
|
session: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
|
|
1183
1298
|
sessionPath: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
1184
1299
|
assemblyManager: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
|
|
1185
|
-
/**
|
|
1186
|
-
* #stateModel SessionTracksManagerSessionMixin
|
|
1187
|
-
*/
|
|
1188
1300
|
assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
|
|
1189
1301
|
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1190
1302
|
}, {
|
|
@@ -1234,11 +1346,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
1234
1346
|
load(): Promise<void>;
|
|
1235
1347
|
loadPre(): Promise<void>;
|
|
1236
1348
|
} & {
|
|
1237
|
-
getAdapterMapEntry(adapterConf:
|
|
1238
|
-
|
|
1349
|
+
getAdapterMapEntry(adapterConf: {
|
|
1350
|
+
[x: string]: unknown;
|
|
1351
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1352
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1353
|
+
[x: string]: unknown;
|
|
1354
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1239
1355
|
[x: string]: string | undefined;
|
|
1240
1356
|
}>;
|
|
1241
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1357
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1358
|
+
[x: string]: unknown;
|
|
1359
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1242
1360
|
[x: string]: string | undefined;
|
|
1243
1361
|
}>;
|
|
1244
1362
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
@@ -1292,11 +1410,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
1292
1410
|
load(): Promise<void>;
|
|
1293
1411
|
loadPre(): Promise<void>;
|
|
1294
1412
|
} & {
|
|
1295
|
-
getAdapterMapEntry(adapterConf:
|
|
1296
|
-
|
|
1413
|
+
getAdapterMapEntry(adapterConf: {
|
|
1414
|
+
[x: string]: unknown;
|
|
1415
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1416
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1417
|
+
[x: string]: unknown;
|
|
1418
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1297
1419
|
[x: string]: string | undefined;
|
|
1298
1420
|
}>;
|
|
1299
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1421
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1422
|
+
[x: string]: unknown;
|
|
1423
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1300
1424
|
[x: string]: string | undefined;
|
|
1301
1425
|
}>;
|
|
1302
1426
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1348,11 +1472,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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1348
1472
|
load(): Promise<void>;
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1349
1473
|
loadPre(): Promise<void>;
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1350
1474
|
} & {
|
|
1351
|
-
getAdapterMapEntry(adapterConf:
|
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1352
|
-
|
|
1475
|
+
getAdapterMapEntry(adapterConf: {
|
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1476
|
+
[x: string]: unknown;
|
|
1477
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1478
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1479
|
+
[x: string]: unknown;
|
|
1480
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
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1353
1481
|
[x: string]: string | undefined;
|
|
1354
1482
|
}>;
|
|
1355
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
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1483
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
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1484
|
+
[x: string]: unknown;
|
|
1485
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1356
1486
|
[x: string]: string | undefined;
|
|
1357
1487
|
}>;
|
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1358
1488
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
@@ -1406,11 +1536,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
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|
1406
1536
|
load(): Promise<void>;
|
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1407
1537
|
loadPre(): Promise<void>;
|
|
1408
1538
|
} & {
|
|
1409
|
-
getAdapterMapEntry(adapterConf:
|
|
1410
|
-
|
|
1539
|
+
getAdapterMapEntry(adapterConf: {
|
|
1540
|
+
[x: string]: unknown;
|
|
1541
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1542
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1543
|
+
[x: string]: unknown;
|
|
1544
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1411
1545
|
[x: string]: string | undefined;
|
|
1412
1546
|
}>;
|
|
1413
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1547
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1548
|
+
[x: string]: unknown;
|
|
1549
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1414
1550
|
[x: string]: string | undefined;
|
|
1415
1551
|
}>;
|
|
1416
1552
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1462,11 +1598,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
1462
1598
|
load(): Promise<void>;
|
|
1463
1599
|
loadPre(): Promise<void>;
|
|
1464
1600
|
} & {
|
|
1465
|
-
getAdapterMapEntry(adapterConf:
|
|
1466
|
-
|
|
1601
|
+
getAdapterMapEntry(adapterConf: {
|
|
1602
|
+
[x: string]: unknown;
|
|
1603
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1604
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1605
|
+
[x: string]: unknown;
|
|
1606
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1467
1607
|
[x: string]: string | undefined;
|
|
1468
1608
|
}>;
|
|
1469
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1609
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1610
|
+
[x: string]: unknown;
|
|
1611
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1470
1612
|
[x: string]: string | undefined;
|
|
1471
1613
|
}>;
|
|
1472
1614
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
|
|
@@ -1527,11 +1669,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
1527
1669
|
load(): Promise<void>;
|
|
1528
1670
|
loadPre(): Promise<void>;
|
|
1529
1671
|
} & {
|
|
1530
|
-
getAdapterMapEntry(adapterConf:
|
|
1531
|
-
|
|
1672
|
+
getAdapterMapEntry(adapterConf: {
|
|
1673
|
+
[x: string]: unknown;
|
|
1674
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1675
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1676
|
+
[x: string]: unknown;
|
|
1677
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1532
1678
|
[x: string]: string | undefined;
|
|
1533
1679
|
}>;
|
|
1534
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1680
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1681
|
+
[x: string]: unknown;
|
|
1682
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1535
1683
|
[x: string]: string | undefined;
|
|
1536
1684
|
}>;
|
|
1537
1685
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
@@ -1583,21 +1731,31 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
1583
1731
|
load(): Promise<void>;
|
|
1584
1732
|
loadPre(): Promise<void>;
|
|
1585
1733
|
} & {
|
|
1586
|
-
getAdapterMapEntry(adapterConf:
|
|
1587
|
-
|
|
1734
|
+
getAdapterMapEntry(adapterConf: {
|
|
1735
|
+
[x: string]: unknown;
|
|
1736
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1737
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1738
|
+
[x: string]: unknown;
|
|
1739
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1588
1740
|
[x: string]: string | undefined;
|
|
1589
1741
|
}>;
|
|
1590
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1742
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1743
|
+
[x: string]: unknown;
|
|
1744
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1591
1745
|
[x: string]: string | undefined;
|
|
1592
1746
|
}>;
|
|
1593
1747
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
|
|
1594
|
-
getRefNameMapForAdapter(adapterConf:
|
|
1748
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1749
|
+
[x: string]: unknown;
|
|
1750
|
+
}, assemblyName: string | undefined, opts: {
|
|
1595
1751
|
signal?: AbortSignal | undefined;
|
|
1596
1752
|
sessionId: string;
|
|
1597
1753
|
}): Promise<{
|
|
1598
1754
|
[x: string]: string | undefined;
|
|
1599
1755
|
} | undefined>;
|
|
1600
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1756
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1757
|
+
[x: string]: unknown;
|
|
1758
|
+
}, assemblyName: string | undefined, opts: {
|
|
1601
1759
|
signal?: AbortSignal | undefined;
|
|
1602
1760
|
sessionId: string;
|
|
1603
1761
|
}): Promise<{
|
|
@@ -1610,9 +1768,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
1610
1768
|
configuration: any;
|
|
1611
1769
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
1612
1770
|
error: unknown;
|
|
1613
|
-
loaded: boolean;
|
|
1614
|
-
* #action
|
|
1615
|
-
*/
|
|
1771
|
+
loaded: boolean;
|
|
1616
1772
|
loadingP: Promise<void> | undefined;
|
|
1617
1773
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1618
1774
|
refNameAliases: {
|
|
@@ -1657,20 +1813,26 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
1657
1813
|
load(): Promise<void>;
|
|
1658
1814
|
loadPre(): Promise<void>;
|
|
1659
1815
|
} & {
|
|
1660
|
-
getAdapterMapEntry(adapterConf:
|
|
1661
|
-
|
|
1816
|
+
getAdapterMapEntry(adapterConf: {
|
|
1817
|
+
[x: string]: unknown;
|
|
1818
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1819
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1820
|
+
[x: string]: unknown;
|
|
1821
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1662
1822
|
[x: string]: string | undefined;
|
|
1663
1823
|
}>;
|
|
1664
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1824
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1825
|
+
[x: string]: unknown;
|
|
1826
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1665
1827
|
[x: string]: string | undefined;
|
|
1666
1828
|
}>;
|
|
1667
1829
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
1668
|
-
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
|
|
1669
|
-
}, {
|
|
1670
|
-
error: unknown;
|
|
1671
|
-
loaded: boolean; /**
|
|
1830
|
+
configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>; /**
|
|
1672
1831
|
* #action
|
|
1673
1832
|
*/
|
|
1833
|
+
}, {
|
|
1834
|
+
error: unknown;
|
|
1835
|
+
loaded: boolean;
|
|
1674
1836
|
loadingP: Promise<void> | undefined;
|
|
1675
1837
|
volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
|
|
1676
1838
|
refNameAliases: {
|
|
@@ -1715,11 +1877,17 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
|
|
|
1715
1877
|
load(): Promise<void>;
|
|
1716
1878
|
loadPre(): Promise<void>;
|
|
1717
1879
|
} & {
|
|
1718
|
-
getAdapterMapEntry(adapterConf:
|
|
1719
|
-
|
|
1880
|
+
getAdapterMapEntry(adapterConf: {
|
|
1881
|
+
[x: string]: unknown;
|
|
1882
|
+
}, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
|
|
1883
|
+
getRefNameMapForAdapter(adapterConf: {
|
|
1884
|
+
[x: string]: unknown;
|
|
1885
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1720
1886
|
[x: string]: string | undefined;
|
|
1721
1887
|
}>;
|
|
1722
|
-
getReverseRefNameMapForAdapter(adapterConf:
|
|
1888
|
+
getReverseRefNameMapForAdapter(adapterConf: {
|
|
1889
|
+
[x: string]: unknown;
|
|
1890
|
+
}, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
|
|
1723
1891
|
[x: string]: string | undefined;
|
|
1724
1892
|
}>;
|
|
1725
1893
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
|