@jbrowse/product-core 2.7.2 → 2.9.0

package/dist/RootModel/FormatDetails.d.ts

@@ -1,6 +1,7 @@
 /**
  * #config FormatDetails
- * generally exists on the config.json or root config as configuration.formatDetails
+ * generally exists on the tracks in the config.json or as a 'session' config as
+ * configuration.formatDetails
  */
 export declare function FormatDetailsConfigSchemaFactory(): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     /**
@@ -29,4 +30,12 @@ export declare function FormatDetailsConfigSchemaFactory(): import("@jbrowse/cor
         defaultValue: number;
         description: string;
     };
+    /**
+     * #slot configuration.formatDetails.maxDepth
+     */
+    maxDepth: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;

package/dist/RootModel/FormatDetails.js

@@ -4,7 +4,8 @@ exports.FormatDetailsConfigSchemaFactory = void 0;
 const configuration_1 = require("@jbrowse/core/configuration");
 /**
  * #config FormatDetails
- * generally exists on the config.json or root config as configuration.formatDetails
+ * generally exists on the tracks in the config.json or as a 'session' config as
+ * configuration.formatDetails
  */
 function FormatDetailsConfigSchemaFactory() {
     return (0, configuration_1.ConfigurationSchema)('FormatDetails', {
@@ -32,7 +33,15 @@ function FormatDetailsConfigSchemaFactory() {
         depth: {
             type: 'number',
             defaultValue: 2,
-            description: 'depth to iterate on subfeatures',
+            description: 'depth to iterate the formatDetails->subfeatures callback on subfeatures (used for example to only apply the callback to the first layer of subfeatures)',
+        },
+        /**
+         * #slot configuration.formatDetails.maxDepth
+         */
+        maxDepth: {
+            type: 'number',
+            defaultValue: 10000,
+            description: 'hide subfeatures greater than a certain depth',
         },
     });
 }

package/dist/Session/SessionTracks.d.ts

@@ -1850,6 +1850,11 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
                 defaultValue: number;
                 description: string;
             };
+            maxDepth: {
+                type: string;
+                defaultValue: number;
+                description: string;
+            };
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
         formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
             config: {

package/dist/Session/Tracks.d.ts

@@ -1832,6 +1832,11 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
                 defaultValue: number;
                 description: string;
             };
+            maxDepth: {
+                type: string;
+                defaultValue: number;
+                description: string;
+            };
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
         formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
             config: {

package/dist/ui/AboutDialogContents.js

@@ -27,6 +27,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
+const clone_1 = __importDefault(require("clone"));
 const copy_to_clipboard_1 = __importDefault(require("copy-to-clipboard"));
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
@@ -39,6 +40,17 @@ const useStyles = (0, mui_1.makeStyles)()({
         minWidth: 800,
     },
 });
+function removeAttr(obj, attr) {
+    for (const prop in obj) {
+        if (prop === attr) {
+            delete obj[prop];
+        }
+        else if (typeof obj[prop] === 'object') {
+            removeAttr(obj[prop], attr);
+        }
+    }
+    return obj;
+}
 function AboutContents({ config, }) {
     const [copied, setCopied] = (0, react_1.useState)(false);
     const conf = (0, configuration_1.readConfObject)(config);
@@ -58,7 +70,8 @@ function AboutContents({ config, }) {
     return (react_1.default.createElement("div", { className: classes.content },
         react_1.default.createElement(BaseFeatureDetail_1.BaseCard, { title: "Configuration" },
             !hideUris ? (react_1.default.createElement(material_1.Button, { variant: "contained", style: { float: 'right' }, onClick: () => {
-                    (0, copy_to_clipboard_1.default)(JSON.stringify(conf, null, 2));
+                    const snap = removeAttr((0, clone_1.default)(conf), 'baseUri');
+                    (0, copy_to_clipboard_1.default)(JSON.stringify(snap, null, 2));
                     setCopied(true);
                     setTimeout(() => setCopied(false), 1000);
                 } }, copied ? 'Copied to clipboard!' : 'Copy config')) : null,

package/esm/RootModel/FormatDetails.d.ts

@@ -1,6 +1,7 @@
 /**
  * #config FormatDetails
- * generally exists on the config.json or root config as configuration.formatDetails
+ * generally exists on the tracks in the config.json or as a 'session' config as
+ * configuration.formatDetails
  */
 export declare function FormatDetailsConfigSchemaFactory(): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     /**
@@ -29,4 +30,12 @@ export declare function FormatDetailsConfigSchemaFactory(): import("@jbrowse/cor
         defaultValue: number;
         description: string;
     };
+    /**
+     * #slot configuration.formatDetails.maxDepth
+     */
+    maxDepth: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
 }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;

package/esm/RootModel/FormatDetails.js

@@ -1,7 +1,8 @@
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
 /**
  * #config FormatDetails
- * generally exists on the config.json or root config as configuration.formatDetails
+ * generally exists on the tracks in the config.json or as a 'session' config as
+ * configuration.formatDetails
  */
 export function FormatDetailsConfigSchemaFactory() {
     return ConfigurationSchema('FormatDetails', {
@@ -29,7 +30,15 @@ export function FormatDetailsConfigSchemaFactory() {
         depth: {
             type: 'number',
             defaultValue: 2,
-            description: 'depth to iterate on subfeatures',
+            description: 'depth to iterate the formatDetails->subfeatures callback on subfeatures (used for example to only apply the callback to the first layer of subfeatures)',
+        },
+        /**
+         * #slot configuration.formatDetails.maxDepth
+         */
+        maxDepth: {
+            type: 'number',
+            defaultValue: 10000,
+            description: 'hide subfeatures greater than a certain depth',
         },
     });
 }

package/esm/Session/SessionTracks.d.ts

@@ -1850,6 +1850,11 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
                 defaultValue: number;
                 description: string;
             };
+            maxDepth: {
+                type: string;
+                defaultValue: number;
+                description: string;
+            };
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
         formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
             config: {

package/esm/Session/Tracks.d.ts

@@ -1832,6 +1832,11 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
                 defaultValue: number;
                 description: string;
             };
+            maxDepth: {
+                type: string;
+                defaultValue: number;
+                description: string;
+            };
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
         formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
             config: {

package/esm/ui/AboutDialogContents.js

@@ -1,4 +1,5 @@
 import React, { useState } from 'react';
+import clone from 'clone';
 import copy from 'copy-to-clipboard';
 import { Button } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
@@ -11,6 +12,17 @@ const useStyles = makeStyles()({
         minWidth: 800,
     },
 });
+function removeAttr(obj, attr) {
+    for (const prop in obj) {
+        if (prop === attr) {
+            delete obj[prop];
+        }
+        else if (typeof obj[prop] === 'object') {
+            removeAttr(obj[prop], attr);
+        }
+    }
+    return obj;
+}
 export default function AboutContents({ config, }) {
     const [copied, setCopied] = useState(false);
     const conf = readConfObject(config);
@@ -30,7 +42,8 @@ export default function AboutContents({ config, }) {
     return (React.createElement("div", { className: classes.content },
         React.createElement(BaseCard, { title: "Configuration" },
             !hideUris ? (React.createElement(Button, { variant: "contained", style: { float: 'right' }, onClick: () => {
-                    copy(JSON.stringify(conf, null, 2));
+                    const snap = removeAttr(clone(conf), 'baseUri');
+                    copy(JSON.stringify(snap, null, 2));
                     setCopied(true);
                     setTimeout(() => setCopied(false), 1000);
                 } }, copied ? 'Copied to clipboard!' : 'Copy config')) : null,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/product-core",
-  "version": "2.7.2",
+  "version": "2.9.0",
   "sideEffects": false,
   "description": "JBrowse 2 code shared between products but not used by plugins",
   "keywords": [
@@ -43,7 +43,7 @@
   },
   "dependencies": {
     "@babel/runtime": "^7.16.3",
-    "@jbrowse/core": "^2.7.2",
+    "@jbrowse/core": "^2.9.0",
     "@mui/icons-material": "^5.0.0",
     "@mui/material": "^5.10.17",
     "copy-to-clipboard": "^3.3.1",
@@ -63,5 +63,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "9052b295f2d322e729254457ed9fe2231fb22cce"
+  "gitHead": "a50b6f67cf8c8f3c65a7b8cd858de2fcca1f2909"
 }