@jbrowse/product-core 2.7.1 → 2.8.0

package/dist/Session/BaseSession.d.ts

@@ -19,6 +19,13 @@ export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelTy
      * is.
      */
     selection: unknown;
+    /**
+     * #volatile
+     * this is the globally "hovered" object. can be anything. code that
+     * wants to deal with this should examine it to see what kind of thing it
+     * is.
+     */
+    hovered: unknown;
 } & {
     readonly root: import("mobx-state-tree").TypeOrStateTreeNodeToStateTreeNode<ROOT_MODEL_TYPE>;
 } & {
@@ -52,11 +59,6 @@ export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelTy
         setSubschema(slotName: string, data: unknown): any;
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         aliases: {
-            /**
-             * #stateModel BaseSessionModel
-             * base session shared by **all** JBrowse products. Be careful what you include
-             * here, everything will use it.
-             */
             type: string;
             defaultValue: never[];
             description: string;
@@ -71,12 +73,8 @@ export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelTy
             adapter: import("mobx-state-tree").IAnyModelType;
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
         cytobands: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            adapter: import("mobx-state-tree").IAnyModelType; /**
-             * #getter
-             */
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>; /**
-         * #getter
-         */
+            adapter: import("mobx-state-tree").IAnyModelType;
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
         displayName: {
             type: string;
             defaultValue: string;
@@ -95,6 +93,10 @@ export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelTy
      * clears the global selection
      */
     clearSelection(): void;
+    /**
+     * #action
+     */
+    setHovered(thing: unknown): void;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 /** Session mixin MST type for the most basic session */
 export type BaseSessionType = ReturnType<typeof BaseSessionModel>;

package/dist/Session/BaseSession.js

@@ -1,8 +1,8 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.isSession = exports.isBaseSession = exports.BaseSessionModel = void 0;
-const nanoid_1 = require("@jbrowse/core/util/nanoid");
 const mobx_state_tree_1 = require("mobx-state-tree");
+const mst_1 = require("@jbrowse/core/util/types/mst");
 /**
  * #stateModel BaseSessionModel
  * base session shared by **all** JBrowse products. Be careful what you include
@@ -14,7 +14,7 @@ function BaseSessionModel(_pluginManager) {
         /**
          * #property
          */
-        id: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.identifier, (0, nanoid_1.nanoid)()),
+        id: mst_1.ElementId,
         /**
          * #property
          */
@@ -32,6 +32,13 @@ function BaseSessionModel(_pluginManager) {
          * is.
          */
         selection: undefined,
+        /**
+         * #volatile
+         * this is the globally "hovered" object. can be anything. code that
+         * wants to deal with this should examine it to see what kind of thing it
+         * is.
+         */
+        hovered: undefined,
     }))
         .views(self => ({
         get root() {
@@ -94,6 +101,12 @@ function BaseSessionModel(_pluginManager) {
         clearSelection() {
             self.selection = undefined;
         },
+        /**
+         * #action
+         */
+        setHovered(thing) {
+            self.hovered = thing;
+        },
     }));
 }
 exports.BaseSessionModel = BaseSessionModel;

package/dist/Session/Connections.d.ts

@@ -26,6 +26,12 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
             };
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
     }, {
+        connect(_arg: {
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: unknown): any;
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
+    } & {
         afterAttach(): void;
         addTrackConf(trackConf: {
             [x: string]: any;
@@ -90,6 +96,12 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
             };
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        connect(_arg: {
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: unknown): any;
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
+    } & {
         afterAttach(): void;
         addTrackConf(trackConf: {
             [x: string]: any;
@@ -125,6 +137,12 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
             };
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
     }, {
+        connect(_arg: {
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: unknown): any;
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
+    } & {
         afterAttach(): void;
         addTrackConf(trackConf: {
             [x: string]: any;

package/dist/Session/MultipleViews.d.ts

@@ -22,9 +22,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
      */
     views: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
 }, {
-    selection: unknown; /**
-     * #action
-     */
+    selection: unknown;
+    hovered: unknown;
 } & {
     readonly root: {
         jbrowse: any;
@@ -1782,6 +1781,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
 } & {
     setSelection(thing: unknown): void;
     clearSelection(): void;
+    setHovered(thing: unknown): void;
 } & {
     readonly visibleWidget: any;
 } & {

package/dist/Session/SessionTracks.d.ts

@@ -15,6 +15,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
     sessionTracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
 }, {
     selection: unknown;
+    hovered: unknown;
 } & {
     readonly root: {
         jbrowse: any;
@@ -1782,6 +1783,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
 } & {
     setSelection(thing: unknown): void;
     clearSelection(): void;
+    setHovered(thing: unknown): void;
 } & {
     getReferring(object: IAnyStateTreeNode): import("./ReferenceManagement").ReferringNode[];
 } & {

package/dist/Session/Tracks.d.ts

@@ -13,6 +13,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
     margin: import("mobx-state-tree").IType<number | undefined, number, number>;
 }, {
     selection: unknown;
+    hovered: unknown;
 } & {
     readonly root: {
         jbrowse: any;
@@ -1764,6 +1765,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
 } & {
     setSelection(thing: unknown): void;
     clearSelection(): void;
+    setHovered(thing: unknown): void;
 } & {
     getReferring(object: IAnyStateTreeNode): import("./ReferenceManagement").ReferringNode[];
 } & {

package/dist/ui/AboutDialogContents.js

@@ -27,6 +27,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
+const clone_1 = __importDefault(require("clone"));
 const copy_to_clipboard_1 = __importDefault(require("copy-to-clipboard"));
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
@@ -39,6 +40,17 @@ const useStyles = (0, mui_1.makeStyles)()({
         minWidth: 800,
     },
 });
+function removeAttr(obj, attr) {
+    for (const prop in obj) {
+        if (prop === attr) {
+            delete obj[prop];
+        }
+        else if (typeof obj[prop] === 'object') {
+            removeAttr(obj[prop], attr);
+        }
+    }
+    return obj;
+}
 function AboutContents({ config, }) {
     const [copied, setCopied] = (0, react_1.useState)(false);
     const conf = (0, configuration_1.readConfObject)(config);
@@ -58,7 +70,8 @@ function AboutContents({ config, }) {
     return (react_1.default.createElement("div", { className: classes.content },
         react_1.default.createElement(BaseFeatureDetail_1.BaseCard, { title: "Configuration" },
             !hideUris ? (react_1.default.createElement(material_1.Button, { variant: "contained", style: { float: 'right' }, onClick: () => {
-                    (0, copy_to_clipboard_1.default)(JSON.stringify(conf, null, 2));
+                    const snap = removeAttr((0, clone_1.default)(conf), 'baseUri');
+                    (0, copy_to_clipboard_1.default)(JSON.stringify(snap, null, 2));
                     setCopied(true);
                     setTimeout(() => setCopied(false), 1000);
                 } }, copied ? 'Copied to clipboard!' : 'Copy config')) : null,

package/esm/Session/BaseSession.d.ts

@@ -19,6 +19,13 @@ export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelTy
      * is.
      */
     selection: unknown;
+    /**
+     * #volatile
+     * this is the globally "hovered" object. can be anything. code that
+     * wants to deal with this should examine it to see what kind of thing it
+     * is.
+     */
+    hovered: unknown;
 } & {
     readonly root: import("mobx-state-tree").TypeOrStateTreeNodeToStateTreeNode<ROOT_MODEL_TYPE>;
 } & {
@@ -52,11 +59,6 @@ export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelTy
         setSubschema(slotName: string, data: unknown): any;
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
         aliases: {
-            /**
-             * #stateModel BaseSessionModel
-             * base session shared by **all** JBrowse products. Be careful what you include
-             * here, everything will use it.
-             */
             type: string;
             defaultValue: never[];
             description: string;
@@ -71,12 +73,8 @@ export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelTy
             adapter: import("mobx-state-tree").IAnyModelType;
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
         cytobands: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            adapter: import("mobx-state-tree").IAnyModelType; /**
-             * #getter
-             */
-        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>; /**
-         * #getter
-         */
+            adapter: import("mobx-state-tree").IAnyModelType;
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
         displayName: {
             type: string;
             defaultValue: string;
@@ -95,6 +93,10 @@ export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelTy
      * clears the global selection
      */
     clearSelection(): void;
+    /**
+     * #action
+     */
+    setHovered(thing: unknown): void;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 /** Session mixin MST type for the most basic session */
 export type BaseSessionType = ReturnType<typeof BaseSessionModel>;

package/esm/Session/BaseSession.js

@@ -1,5 +1,5 @@
-import { nanoid } from '@jbrowse/core/util/nanoid';
 import { getParent, isStateTreeNode, types, } from 'mobx-state-tree';
+import { ElementId } from '@jbrowse/core/util/types/mst';
 /**
  * #stateModel BaseSessionModel
  * base session shared by **all** JBrowse products. Be careful what you include
@@ -11,7 +11,7 @@ export function BaseSessionModel(_pluginManager) {
         /**
          * #property
          */
-        id: types.optional(types.identifier, nanoid()),
+        id: ElementId,
         /**
          * #property
          */
@@ -29,6 +29,13 @@ export function BaseSessionModel(_pluginManager) {
          * is.
          */
         selection: undefined,
+        /**
+         * #volatile
+         * this is the globally "hovered" object. can be anything. code that
+         * wants to deal with this should examine it to see what kind of thing it
+         * is.
+         */
+        hovered: undefined,
     }))
         .views(self => ({
         get root() {
@@ -91,6 +98,12 @@ export function BaseSessionModel(_pluginManager) {
         clearSelection() {
             self.selection = undefined;
         },
+        /**
+         * #action
+         */
+        setHovered(thing) {
+            self.hovered = thing;
+        },
     }));
 }
 /** Type guard for BaseSession */

package/esm/Session/Connections.d.ts

@@ -26,6 +26,12 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
             };
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
     }, {
+        connect(_arg: {
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: unknown): any;
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
+    } & {
         afterAttach(): void;
         addTrackConf(trackConf: {
             [x: string]: any;
@@ -90,6 +96,12 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
             };
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>>;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        connect(_arg: {
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: unknown): any;
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
+    } & {
         afterAttach(): void;
         addTrackConf(trackConf: {
             [x: string]: any;
@@ -125,6 +137,12 @@ export declare function ConnectionManagementSessionMixin(pluginManager: PluginMa
             };
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>;
     }, {
+        connect(_arg: {
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            setSubschema(slotName: string, data: unknown): any;
+        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): void;
+    } & {
         afterAttach(): void;
         addTrackConf(trackConf: {
             [x: string]: any;

package/esm/Session/MultipleViews.d.ts

@@ -22,9 +22,8 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
      */
     views: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
 }, {
-    selection: unknown; /**
-     * #action
-     */
+    selection: unknown;
+    hovered: unknown;
 } & {
     readonly root: {
         jbrowse: any;
@@ -1782,6 +1781,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
 } & {
     setSelection(thing: unknown): void;
     clearSelection(): void;
+    setHovered(thing: unknown): void;
 } & {
     readonly visibleWidget: any;
 } & {

package/esm/Session/SessionTracks.d.ts

@@ -15,6 +15,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
     sessionTracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
 }, {
     selection: unknown;
+    hovered: unknown;
 } & {
     readonly root: {
         jbrowse: any;
@@ -1782,6 +1783,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
 } & {
     setSelection(thing: unknown): void;
     clearSelection(): void;
+    setHovered(thing: unknown): void;
 } & {
     getReferring(object: IAnyStateTreeNode): import("./ReferenceManagement").ReferringNode[];
 } & {

package/esm/Session/Tracks.d.ts

@@ -13,6 +13,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
     margin: import("mobx-state-tree").IType<number | undefined, number, number>;
 }, {
     selection: unknown;
+    hovered: unknown;
 } & {
     readonly root: {
         jbrowse: any;
@@ -1764,6 +1765,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
 } & {
     setSelection(thing: unknown): void;
     clearSelection(): void;
+    setHovered(thing: unknown): void;
 } & {
     getReferring(object: IAnyStateTreeNode): import("./ReferenceManagement").ReferringNode[];
 } & {

package/esm/ui/AboutDialogContents.js

@@ -1,4 +1,5 @@
 import React, { useState } from 'react';
+import clone from 'clone';
 import copy from 'copy-to-clipboard';
 import { Button } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
@@ -11,6 +12,17 @@ const useStyles = makeStyles()({
         minWidth: 800,
     },
 });
+function removeAttr(obj, attr) {
+    for (const prop in obj) {
+        if (prop === attr) {
+            delete obj[prop];
+        }
+        else if (typeof obj[prop] === 'object') {
+            removeAttr(obj[prop], attr);
+        }
+    }
+    return obj;
+}
 export default function AboutContents({ config, }) {
     const [copied, setCopied] = useState(false);
     const conf = readConfObject(config);
@@ -30,7 +42,8 @@ export default function AboutContents({ config, }) {
     return (React.createElement("div", { className: classes.content },
         React.createElement(BaseCard, { title: "Configuration" },
             !hideUris ? (React.createElement(Button, { variant: "contained", style: { float: 'right' }, onClick: () => {
-                    copy(JSON.stringify(conf, null, 2));
+                    const snap = removeAttr(clone(conf), 'baseUri');
+                    copy(JSON.stringify(snap, null, 2));
                     setCopied(true);
                     setTimeout(() => setCopied(false), 1000);
                 } }, copied ? 'Copied to clipboard!' : 'Copy config')) : null,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/product-core",
-  "version": "2.7.1",
+  "version": "2.8.0",
   "sideEffects": false,
   "description": "JBrowse 2 code shared between products but not used by plugins",
   "keywords": [
@@ -43,7 +43,7 @@
   },
   "dependencies": {
     "@babel/runtime": "^7.16.3",
-    "@jbrowse/core": "^2.7.1",
+    "@jbrowse/core": "^2.8.0",
     "@mui/icons-material": "^5.0.0",
     "@mui/material": "^5.10.17",
     "copy-to-clipboard": "^3.3.1",
@@ -63,5 +63,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "2cda1611eebd12517f2a3cfc1b612face27005d4"
+  "gitHead": "ee8c2bdc8bd4f1a70b1eefda984f04a2830d9ca0"
 }