@jbrowse/product-core 2.6.1

package/dist/Session/Tracks.d.ts

@@ -0,0 +1,1821 @@
+import { IAnyStateTreeNode, Instance } from 'mobx-state-tree';
+import PluginManager from '@jbrowse/core/PluginManager';
+import { AnyConfiguration, AnyConfigurationModel } from '@jbrowse/core/configuration';
+/**
+ * #stateModel TracksManagerSessionMixin
+ * composed of
+ * - BaseSessionModel
+ * - ReferenceManagementSessionMixin
+ */
+export declare function TracksManagerSessionMixin(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
+    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    name: import("mobx-state-tree").ISimpleType<string>;
+    margin: import("mobx-state-tree").IType<number | undefined, number, number>;
+}, {
+    selection: unknown;
+} & {
+    readonly root: {
+        jbrowse: any;
+        session: any;
+        sessionPath: string;
+        assemblyManager: {
+            assemblies: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
+        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+            readonly assemblyNameMap: {
+                [key: string]: ({
+                    configuration: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                    error: unknown;
+                    loaded: boolean;
+                    loadingP: Promise<void> | undefined;
+                    volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                    refNameAliases: {
+                        [x: string]: string | undefined;
+                    } | undefined;
+                    lowerCaseRefNameAliases: {
+                        [x: string]: string | undefined;
+                    } | undefined;
+                    cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+                } & {
+                    readonly initialized: boolean;
+                    readonly name: string;
+                    readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                    readonly aliases: string[];
+                    readonly displayName: string | undefined;
+                    hasName(name: string): boolean;
+                    readonly allAliases: string[];
+                    readonly allRefNames: string[] | undefined;
+                    readonly lowerCaseRefNames: string[] | undefined;
+                    readonly allRefNamesWithLowerCase: string[] | undefined;
+                    readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                    readonly refNameColors: string[];
+                } & {
+                    readonly refNames: string[] | undefined;
+                } & {
+                    getCanonicalRefName(refName: string): string | undefined;
+                    getRefNameColor(refName: string): string | undefined;
+                    isValidRefName(refName: string): boolean;
+                } & {
+                    setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                    setError(e: unknown): void;
+                    setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                    setRefNameAliases(aliases: {
+                        [x: string]: string | undefined;
+                    }, lcAliases: {
+                        [x: string]: string | undefined;
+                    }): void;
+                    setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                    setLoadingP(p?: Promise<void> | undefined): void;
+                    load(): Promise<void>;
+                    loadPre(): Promise<void>;
+                } & {
+                    getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                    getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        [x: string]: string | undefined;
+                    }>;
+                    getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        [x: string]: string | undefined;
+                    }>;
+                } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                    configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+                }, {
+                    error: unknown;
+                    loaded: boolean;
+                    loadingP: Promise<void> | undefined;
+                    volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                    refNameAliases: {
+                        [x: string]: string | undefined;
+                    } | undefined;
+                    lowerCaseRefNameAliases: {
+                        [x: string]: string | undefined;
+                    } | undefined;
+                    cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+                } & {
+                    readonly initialized: boolean;
+                    readonly name: string;
+                    readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                    readonly aliases: string[];
+                    readonly displayName: string | undefined;
+                    hasName(name: string): boolean;
+                    readonly allAliases: string[];
+                    readonly allRefNames: string[] | undefined;
+                    readonly lowerCaseRefNames: string[] | undefined;
+                    readonly allRefNamesWithLowerCase: string[] | undefined;
+                    readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                    readonly refNameColors: string[];
+                } & {
+                    readonly refNames: string[] | undefined;
+                } & {
+                    getCanonicalRefName(refName: string): string | undefined;
+                    getRefNameColor(refName: string): string | undefined;
+                    isValidRefName(refName: string): boolean;
+                } & {
+                    setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                    setError(e: unknown): void;
+                    setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                    setRefNameAliases(aliases: {
+                        [x: string]: string | undefined;
+                    }, lcAliases: {
+                        [x: string]: string | undefined;
+                    }): void;
+                    setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                    setLoadingP(p?: Promise<void> | undefined): void;
+                    load(): Promise<void>;
+                    loadPre(): Promise<void>;
+                } & {
+                    getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                    getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        [x: string]: string | undefined;
+                    }>;
+                    getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        [x: string]: string | undefined;
+                    }>;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
+            };
+        } & {
+            get(asmName: string): ({
+                configuration: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
+            readonly assemblyNamesList: any[];
+            readonly assemblyList: ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                setSubschema(slotName: string, data: unknown): any;
+            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+            readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+        } & {
+            waitForAssembly(assemblyName: string): Promise<({
+                configuration: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
+            getRefNameMapForAdapter(adapterConf: unknown, assemblyName: string | undefined, opts: {
+                signal?: AbortSignal | undefined;
+                sessionId: string;
+            }): Promise<{
+                [x: string]: string | undefined;
+            } | undefined>;
+            getReverseRefNameMapForAdapter(adapterConf: unknown, assemblyName: string | undefined, opts: {
+                signal?: AbortSignal | undefined;
+                sessionId: string;
+            }): Promise<{
+                [x: string]: string | undefined;
+            } | undefined>;
+            isValidRefName(refName: string, assemblyName: string): boolean;
+        } & {
+            afterAttach(): void;
+            removeAssembly(asm: {
+                configuration: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
+            addAssembly(configuration: any): void;
+            replaceAssembly(idx: number, configuration: any): void;
+        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
+            assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        }, {
+            readonly assemblyNameMap: {
+                [key: string]: ({
+                    configuration: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                    error: unknown;
+                    loaded: boolean;
+                    loadingP: Promise<void> | undefined;
+                    volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                    refNameAliases: {
+                        [x: string]: string | undefined;
+                    } | undefined;
+                    lowerCaseRefNameAliases: {
+                        [x: string]: string | undefined;
+                    } | undefined;
+                    cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+                } & {
+                    readonly initialized: boolean;
+                    readonly name: string;
+                    readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                    readonly aliases: string[];
+                    readonly displayName: string | undefined;
+                    hasName(name: string): boolean;
+                    readonly allAliases: string[];
+                    readonly allRefNames: string[] | undefined;
+                    readonly lowerCaseRefNames: string[] | undefined;
+                    readonly allRefNamesWithLowerCase: string[] | undefined;
+                    readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                    readonly refNameColors: string[];
+                } & {
+                    readonly refNames: string[] | undefined;
+                } & {
+                    getCanonicalRefName(refName: string): string | undefined;
+                    getRefNameColor(refName: string): string | undefined;
+                    isValidRefName(refName: string): boolean;
+                } & {
+                    setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                    setError(e: unknown): void;
+                    setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                    setRefNameAliases(aliases: {
+                        [x: string]: string | undefined;
+                    }, lcAliases: {
+                        [x: string]: string | undefined;
+                    }): void;
+                    setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                    setLoadingP(p?: Promise<void> | undefined): void;
+                    load(): Promise<void>;
+                    loadPre(): Promise<void>;
+                } & {
+                    getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                    getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        [x: string]: string | undefined;
+                    }>;
+                    getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        [x: string]: string | undefined;
+                    }>;
+                } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                    configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+                }, {
+                    error: unknown;
+                    loaded: boolean;
+                    loadingP: Promise<void> | undefined;
+                    volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                    refNameAliases: {
+                        [x: string]: string | undefined;
+                    } | undefined;
+                    lowerCaseRefNameAliases: {
+                        [x: string]: string | undefined;
+                    } | undefined;
+                    cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+                } & {
+                    readonly initialized: boolean;
+                    readonly name: string;
+                    readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                    readonly aliases: string[];
+                    readonly displayName: string | undefined;
+                    hasName(name: string): boolean;
+                    readonly allAliases: string[];
+                    readonly allRefNames: string[] | undefined;
+                    readonly lowerCaseRefNames: string[] | undefined;
+                    readonly allRefNamesWithLowerCase: string[] | undefined;
+                    readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                    readonly refNameColors: string[];
+                } & {
+                    readonly refNames: string[] | undefined;
+                } & {
+                    getCanonicalRefName(refName: string): string | undefined;
+                    getRefNameColor(refName: string): string | undefined;
+                    isValidRefName(refName: string): boolean;
+                } & {
+                    setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                    setError(e: unknown): void;
+                    setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                    setRefNameAliases(aliases: {
+                        [x: string]: string | undefined;
+                    }, lcAliases: {
+                        [x: string]: string | undefined;
+                    }): void;
+                    setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                    setLoadingP(p?: Promise<void> | undefined): void;
+                    load(): Promise<void>;
+                    loadPre(): Promise<void>;
+                } & {
+                    getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                    getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        [x: string]: string | undefined;
+                    }>;
+                    getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        [x: string]: string | undefined;
+                    }>;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
+            };
+        } & {
+            get(asmName: string): ({
+                configuration: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
+            readonly assemblyNamesList: any[];
+            readonly assemblyList: ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                setSubschema(slotName: string, data: unknown): any;
+            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+            readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+        } & {
+            waitForAssembly(assemblyName: string): Promise<({
+                configuration: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
+            getRefNameMapForAdapter(adapterConf: unknown, assemblyName: string | undefined, opts: {
+                signal?: AbortSignal | undefined;
+                sessionId: string;
+            }): Promise<{
+                [x: string]: string | undefined;
+            } | undefined>;
+            getReverseRefNameMapForAdapter(adapterConf: unknown, assemblyName: string | undefined, opts: {
+                signal?: AbortSignal | undefined;
+                sessionId: string;
+            }): Promise<{
+                [x: string]: string | undefined;
+            } | undefined>;
+            isValidRefName(refName: string, assemblyName: string): boolean;
+        } & {
+            afterAttach(): void;
+            removeAssembly(asm: {
+                configuration: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
+            addAssembly(configuration: any): void;
+            replaceAssembly(idx: number, configuration: any): void;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+        adminMode: boolean;
+        isAssemblyEditing: boolean;
+        error: unknown;
+        textSearchManager: import("@jbrowse/core/util").TextSearchManager;
+        pluginManager: PluginManager;
+    } & {
+        /** Type guard for SessionWithTracks */
+        setError(error: unknown): void;
+        setSession(sessionSnapshot?: any): void;
+        setDefaultSession(): void;
+        setSessionPath(path: string): void;
+        renameCurrentSession(newName: string): void;
+        setAssemblyEditing(flag: boolean): void;
+    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+        jbrowse: import("mobx-state-tree").IAnyType;
+        session: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
+        sessionPath: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+        assemblyManager: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
+            assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        }, {
+            readonly assemblyNameMap: {
+                [key: string]: ({
+                    configuration: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                    error: unknown;
+                    loaded: boolean;
+                    loadingP: Promise<void> | undefined;
+                    volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                    refNameAliases: {
+                        [x: string]: string | undefined;
+                    } | undefined;
+                    lowerCaseRefNameAliases: {
+                        [x: string]: string | undefined;
+                    } | undefined;
+                    cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+                } & {
+                    readonly initialized: boolean;
+                    readonly name: string;
+                    readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                    readonly aliases: string[];
+                    readonly displayName: string | undefined;
+                    hasName(name: string): boolean;
+                    readonly allAliases: string[];
+                    readonly allRefNames: string[] | undefined;
+                    readonly lowerCaseRefNames: string[] | undefined;
+                    readonly allRefNamesWithLowerCase: string[] | undefined;
+                    readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                    readonly refNameColors: string[];
+                } & {
+                    readonly refNames: string[] | undefined;
+                } & {
+                    getCanonicalRefName(refName: string): string | undefined;
+                    getRefNameColor(refName: string): string | undefined;
+                    isValidRefName(refName: string): boolean;
+                } & {
+                    setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                    setError(e: unknown): void;
+                    setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                    setRefNameAliases(aliases: {
+                        [x: string]: string | undefined;
+                    }, lcAliases: {
+                        [x: string]: string | undefined;
+                    }): void;
+                    setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                    setLoadingP(p?: Promise<void> | undefined): void;
+                    load(): Promise<void>;
+                    loadPre(): Promise<void>;
+                } & {
+                    getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                    getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        [x: string]: string | undefined;
+                    }>;
+                    getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        [x: string]: string | undefined;
+                    }>;
+                } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                    configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+                }, {
+                    error: unknown;
+                    loaded: boolean;
+                    loadingP: Promise<void> | undefined;
+                    volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                    refNameAliases: {
+                        [x: string]: string | undefined;
+                    } | undefined;
+                    lowerCaseRefNameAliases: {
+                        [x: string]: string | undefined;
+                    } | undefined;
+                    cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+                } & {
+                    readonly initialized: boolean;
+                    readonly name: string;
+                    readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                    readonly aliases: string[];
+                    readonly displayName: string | undefined;
+                    hasName(name: string): boolean;
+                    readonly allAliases: string[];
+                    readonly allRefNames: string[] | undefined;
+                    readonly lowerCaseRefNames: string[] | undefined;
+                    readonly allRefNamesWithLowerCase: string[] | undefined;
+                    readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                    readonly refNameColors: string[];
+                } & {
+                    readonly refNames: string[] | undefined;
+                } & {
+                    getCanonicalRefName(refName: string): string | undefined;
+                    getRefNameColor(refName: string): string | undefined;
+                    isValidRefName(refName: string): boolean;
+                } & {
+                    setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                    setError(e: unknown): void;
+                    setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                    setRefNameAliases(aliases: {
+                        [x: string]: string | undefined;
+                    }, lcAliases: {
+                        [x: string]: string | undefined;
+                    }): void;
+                    setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                    setLoadingP(p?: Promise<void> | undefined): void;
+                    load(): Promise<void>;
+                    loadPre(): Promise<void>;
+                } & {
+                    getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                    getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        [x: string]: string | undefined;
+                    }>;
+                    getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                        [x: string]: string | undefined;
+                    }>;
+                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
+            };
+        } & {
+            get(asmName: string): ({
+                configuration: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
+            readonly assemblyNamesList: any[];
+            readonly assemblyList: ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                setSubschema(slotName: string, data: unknown): any;
+            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+            readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+        } & {
+            waitForAssembly(assemblyName: string): Promise<({
+                configuration: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
+            getRefNameMapForAdapter(adapterConf: unknown, assemblyName: string | undefined, opts: {
+                signal?: AbortSignal | undefined;
+                sessionId: string;
+            }): Promise<{
+                [x: string]: string | undefined;
+            } | undefined>;
+            getReverseRefNameMapForAdapter(adapterConf: unknown, assemblyName: string | undefined, opts: {
+                signal?: AbortSignal | undefined;
+                sessionId: string;
+            }): Promise<{
+                [x: string]: string | undefined;
+            } | undefined>;
+            isValidRefName(refName: string, assemblyName: string): boolean;
+        } & {
+            afterAttach(): void;
+            removeAssembly(asm: {
+                configuration: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown;
+                loaded: boolean;
+                loadingP: Promise<void> | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                refNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                lowerCaseRefNameAliases: {
+                    [x: string]: string | undefined;
+                } | undefined;
+                cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+            } & {
+                readonly initialized: boolean;
+                readonly name: string;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+                readonly aliases: string[];
+                readonly displayName: string | undefined;
+                hasName(name: string): boolean;
+                readonly allAliases: string[];
+                readonly allRefNames: string[] | undefined;
+                readonly lowerCaseRefNames: string[] | undefined;
+                readonly allRefNamesWithLowerCase: string[] | undefined;
+                readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+                readonly refNameColors: string[];
+            } & {
+                readonly refNames: string[] | undefined;
+            } & {
+                getCanonicalRefName(refName: string): string | undefined;
+                getRefNameColor(refName: string): string | undefined;
+                isValidRefName(refName: string): boolean;
+            } & {
+                setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+                setError(e: unknown): void;
+                setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+                setRefNameAliases(aliases: {
+                    [x: string]: string | undefined;
+                }, lcAliases: {
+                    [x: string]: string | undefined;
+                }): void;
+                setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+                setLoadingP(p?: Promise<void> | undefined): void;
+                load(): Promise<void>;
+                loadPre(): Promise<void>;
+            } & {
+                getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
+                getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+                getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
+                    [x: string]: string | undefined;
+                }>;
+            }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>): void;
+            addAssembly(configuration: any): void;
+            replaceAssembly(idx: number, configuration: any): void;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
+    }, {
+        rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+        adminMode: boolean;
+        isAssemblyEditing: boolean;
+        error: unknown;
+        textSearchManager: import("@jbrowse/core/util").TextSearchManager;
+        pluginManager: PluginManager;
+    } & {
+        /** Type guard for SessionWithTracks */
+        setError(error: unknown): void;
+        setSession(sessionSnapshot?: any): void;
+        setDefaultSession(): void;
+        setSessionPath(path: string): void;
+        renameCurrentSession(newName: string): void;
+        setAssemblyEditing(flag: boolean): void;
+    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+} & {
+    readonly jbrowse: any;
+    readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
+    readonly configuration: {
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: unknown): any;
+    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
+    readonly adminMode: boolean;
+    readonly textSearchManager: import("@jbrowse/core/util").TextSearchManager;
+} & {
+    readonly assemblies: ({
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: unknown): any;
+    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        aliases: {
+            type: string;
+            defaultValue: never[];
+            description: string;
+        };
+        sequence: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+        refNameColors: {
+            type: string;
+            defaultValue: never[];
+            description: string;
+        };
+        refNameAliases: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+            adapter: import("mobx-state-tree").IAnyModelType;
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+        cytobands: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+            adapter: import("mobx-state-tree").IAnyModelType;
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+        displayName: {
+            type: string;
+            defaultValue: string;
+            description: string;
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "name">>>)[];
+} & {
+    setSelection(thing: unknown): void;
+    clearSelection(): void;
+} & {
+    getReferring(object: IAnyStateTreeNode): import("./ReferenceManagement").ReferringNode[];
+} & {
+    removeReferring(referring: import("./ReferenceManagement").ReferringNode[], track: {
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: unknown): any;
+    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        name: {
+            description: string;
+            type: string;
+            defaultValue: string;
+        };
+        assemblyNames: {
+            description: string;
+            type: string;
+            defaultValue: string[];
+        };
+        description: {
+            description: string;
+            type: string;
+            defaultValue: string;
+        };
+        category: {
+            description: string;
+            type: string;
+            defaultValue: never[];
+        };
+        metadata: {
+            type: string;
+            description: string;
+            defaultValue: {};
+        };
+        adapter: import("mobx-state-tree").IAnyModelType;
+        textSearching: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+            indexingAttributes: {
+                type: string;
+                description: string;
+                defaultValue: string[];
+            };
+            indexingFeatureTypesToExclude: {
+                type: string;
+                description: string;
+                defaultValue: string[];
+            };
+            textSearchAdapter: import("mobx-state-tree").IAnyModelType;
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+        displays: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
+        formatDetails: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+            feature: {
+                type: string;
+                description: string;
+                defaultValue: {};
+                contextVariable: string[];
+            };
+            subfeatures: {
+                type: string;
+                description: string;
+                defaultValue: {};
+                contextVariable: string[];
+            };
+            depth: {
+                type: string;
+                defaultValue: number;
+                description: string;
+            };
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+        formatAbout: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+            config: {
+                type: string;
+                description: string;
+                defaultValue: {};
+                contextVariable: string[];
+            };
+            hideUris: {
+                type: string;
+                defaultValue: boolean;
+            };
+        }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "trackId">>>, callbacks: Function[], dereferenceTypeCount: Record<string, number>): void;
+} & {
+    /**
+     * #getter
+     */
+    readonly tracks: ({
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: unknown): any;
+    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+} & {
+    /**
+     * #action
+     */
+    addTrackConf(trackConf: AnyConfiguration): any;
+    /**
+     * #action
+     */
+    deleteTrackConf(trackConf: AnyConfigurationModel): any;
+}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+/** Session mixin MST type for a session that has tracks */
+export type SessionWithTracksType = ReturnType<typeof TracksManagerSessionMixin>;
+/** Instance of a session that has tracks */
+export type SessionWithTracks = Instance<SessionWithTracksType>;
+/** Type guard for SessionWithTracks */
+export declare function isSessionWithTracks(thing: IAnyStateTreeNode): thing is SessionWithTracks;