@jbrowse/product-core 2.16.1 → 2.18.0

package/dist/Session/MultipleViews.d.ts

@@ -1,14 +1,8 @@
-import { IAnyStateTreeNode, Instance } from 'mobx-state-tree';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { Region } from '@jbrowse/core/util';
-import { IBaseViewModel } from '@jbrowse/core/pluggableElementTypes';
-import { IBaseViewModelWithDisplayedRegions } from '@jbrowse/core/pluggableElementTypes/models/BaseViewModel';
-/**
- * #stateModel MultipleViewsSessionMixin
- * composed of
- * - [BaseSessionModel](../basesessionmodel)
- * - [DrawerWidgetSessionMixin](../drawerwidgetsessionmixin)
- */
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { IBaseViewModel } from '@jbrowse/core/pluggableElementTypes';
+import type { IBaseViewModelWithDisplayedRegions } from '@jbrowse/core/pluggableElementTypes/models/BaseViewModel';
+import type { Region } from '@jbrowse/core/util';
+import type { IAnyStateTreeNode, Instance } from 'mobx-state-tree';
 export declare function MultipleViewsSessionMixin(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     name: import("mobx-state-tree").ISimpleType<string>;
@@ -20,9 +14,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
     activeWidgets: import("mobx-state-tree").IMapType<import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>>;
     minimized: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
 } & {
-    /**
-     * #property
-     */
     views: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
 }, {
     selection: unknown;
@@ -38,9 +29,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             }, {
                 error: unknown;
                 loadingP: Promise<void> | undefined;
-                volatileRegions: import("@jbrowse/core/assemblyManager/assembly" /**
-                 * #property
-                 */).BasicRegion[] | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
                 refNameAliases: {
                     [x: string]: string;
                 } | undefined;
@@ -53,9 +42,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 readonly initialized: boolean;
                 readonly name: string;
-                readonly regions: import("@jbrowse/core/assemblyManager/assembly" /**
-                 * #action
-                 */).BasicRegion[] | undefined;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
                 readonly aliases: string[];
                 readonly displayName: string | undefined;
                 hasName(name: string): boolean;
@@ -610,7 +597,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal;
+                stopToken?: string;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string;
@@ -618,7 +605,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal;
+                stopToken?: string;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string;
@@ -634,9 +621,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             }, {
                 error: unknown;
                 loadingP: Promise<void> | undefined;
-                volatileRegions: import("@jbrowse/core/assemblyManager/assembly" /**
-                 * #property
-                 */).BasicRegion[] | undefined;
+                volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
                 refNameAliases: {
                     [x: string]: string;
                 } | undefined;
@@ -649,9 +634,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             } & {
                 readonly initialized: boolean;
                 readonly name: string;
-                readonly regions: import("@jbrowse/core/assemblyManager/assembly" /**
-                 * #action
-                 */).BasicRegion[] | undefined;
+                readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
                 readonly aliases: string[];
                 readonly displayName: string | undefined;
                 hasName(name: string): boolean;
@@ -1136,7 +1119,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal;
+                stopToken?: string;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string;
@@ -1144,7 +1127,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal;
+                stopToken?: string;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string;
@@ -1675,7 +1658,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal;
+                stopToken?: string;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string;
@@ -1683,7 +1666,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal;
+                stopToken?: string;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string;
@@ -1718,9 +1701,7 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
                 [x: string]: any;
-            } & import("mobx-state-tree/dist/internal" /**
-             * #action
-             */).NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
         } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
     readonly adminMode: boolean;
@@ -1780,48 +1761,18 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
     editConfiguration(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel): void;
     afterAttach(): void;
 } & {
-    /**
-     * #action
-     */
     moveViewDown(id: string): void;
-    /**
-     * #action
-     */
     moveViewUp(id: string): void;
-    /**
-     * #action
-     */
     moveViewToTop(id: string): void;
-    /**
-     * #action
-     */
     moveViewToBottom(id: string): void;
-    /**
-     * #action
-     */
     addView(typeName: string, initialState?: {}): any;
-    /**
-     * #action
-     */
     removeView(view: IBaseViewModel): void;
-    /**
-     * #action
-     */
     addLinearGenomeViewOfAssembly(assemblyName: string, initialState?: {}): any;
-    /**
-     * #action
-     */
     addViewOfAssembly(viewType: string, assemblyName: string, initialState?: Record<string, unknown>): any;
-    /**
-     * #action
-     */
     addViewFromAnotherView(viewType: string, otherView: IBaseViewModelWithDisplayedRegions, initialState?: {
         displayedRegions?: Region[];
     }): any;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-/** Session mixin MST type for a session that manages multiple views */
 export type SessionWithMultipleViewsType = ReturnType<typeof MultipleViewsSessionMixin>;
-/** Instance of a session with multiple views */
 export type SessionWithMultipleViews = Instance<SessionWithMultipleViewsType>;
-/** Type guard for SessionWithMultipleViews */
 export declare function isSessionWithMultipleViews(session: IAnyStateTreeNode): session is SessionWithMultipleViews;

package/dist/Session/MultipleViews.js

@@ -2,48 +2,29 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.MultipleViewsSessionMixin = MultipleViewsSessionMixin;
 exports.isSessionWithMultipleViews = isSessionWithMultipleViews;
-const mobx_state_tree_1 = require("mobx-state-tree");
 const configuration_1 = require("@jbrowse/core/configuration");
-const DrawerWidgets_1 = require("./DrawerWidgets");
-// locals
+const mobx_state_tree_1 = require("mobx-state-tree");
 const BaseSession_1 = require("./BaseSession");
-/**
- * #stateModel MultipleViewsSessionMixin
- * composed of
- * - [BaseSessionModel](../basesessionmodel)
- * - [DrawerWidgetSessionMixin](../drawerwidgetsessionmixin)
- */
+const DrawerWidgets_1 = require("./DrawerWidgets");
 function MultipleViewsSessionMixin(pluginManager) {
     return mobx_state_tree_1.types
         .compose((0, BaseSession_1.BaseSessionModel)(pluginManager), (0, DrawerWidgets_1.DrawerWidgetSessionMixin)(pluginManager))
         .props({
-        /**
-         * #property
-         */
         views: mobx_state_tree_1.types.array(pluginManager.pluggableMstType('view', 'stateModel')),
     })
         .actions(self => ({
-        /**
-         * #action
-         */
         moveViewDown(id) {
             const idx = self.views.findIndex(v => v.id === id);
             if (idx !== -1 && idx < self.views.length - 1) {
                 self.views.splice(idx, 2, self.views[idx + 1], self.views[idx]);
             }
         },
-        /**
-         * #action
-         */
         moveViewUp(id) {
             const idx = self.views.findIndex(view => view.id === id);
             if (idx > 0) {
                 self.views.splice(idx - 1, 2, self.views[idx], self.views[idx - 1]);
             }
         },
-        /**
-         * #action
-         */
         moveViewToTop(id) {
             const idx = self.views.findIndex(view => view.id === id);
             self.views = (0, mobx_state_tree_1.cast)([
@@ -51,9 +32,6 @@ function MultipleViewsSessionMixin(pluginManager) {
                 ...self.views.filter(view => view.id !== id),
             ]);
         },
-        /**
-         * #action
-         */
         moveViewToBottom(id) {
             const idx = self.views.findIndex(view => view.id === id);
             self.views = (0, mobx_state_tree_1.cast)([
@@ -61,9 +39,6 @@ function MultipleViewsSessionMixin(pluginManager) {
                 self.views[idx],
             ]);
         },
-        /**
-         * #action
-         */
         addView(typeName, initialState = {}) {
             const typeDefinition = pluginManager.getElementType('view', typeName);
             if (!typeDefinition) {
@@ -75,9 +50,6 @@ function MultipleViewsSessionMixin(pluginManager) {
             });
             return self.views[length - 1];
         },
-        /**
-         * #action
-         */
         removeView(view) {
             for (const [, widget] of self.activeWidgets) {
                 if (widget.view && widget.view.id === view.id) {
@@ -86,15 +58,9 @@ function MultipleViewsSessionMixin(pluginManager) {
             }
             self.views.remove(view);
         },
-        /**
-         * #action
-         */
         addLinearGenomeViewOfAssembly(assemblyName, initialState = {}) {
             return this.addViewOfAssembly('LinearGenomeView', assemblyName, initialState);
         },
-        /**
-         * #action
-         */
         addViewOfAssembly(viewType, assemblyName, initialState = {}) {
             const asm = self.assemblies.find(s => (0, configuration_1.readConfObject)(s, 'name') === assemblyName);
             if (!asm) {
@@ -105,9 +71,6 @@ function MultipleViewsSessionMixin(pluginManager) {
                 displayRegionsFromAssemblyName: (0, configuration_1.readConfObject)(asm, 'name'),
             });
         },
-        /**
-         * #action
-         */
         addViewFromAnotherView(viewType, otherView, initialState = {}) {
             const state = { ...initialState };
             state.displayedRegions = (0, mobx_state_tree_1.getSnapshot)(otherView.displayedRegions);
@@ -115,7 +78,6 @@ function MultipleViewsSessionMixin(pluginManager) {
         },
     }));
 }
-/** Type guard for SessionWithMultipleViews */
 function isSessionWithMultipleViews(session) {
     return (0, BaseSession_1.isBaseSession)(session) && 'views' in session;
 }

package/dist/Session/ReferenceManagement.d.ts

@@ -1,34 +1,15 @@
-/** MST props, views, actions, etc related to managing connections */
-import PluginManager from '@jbrowse/core/PluginManager';
-import { IAnyStateTreeNode, Instance } from 'mobx-state-tree';
+import type PluginManager from '@jbrowse/core/PluginManager';
 import type { BaseTrackConfig } from '@jbrowse/core/pluggableElementTypes';
+import type { IAnyStateTreeNode, Instance } from 'mobx-state-tree';
 export interface ReferringNode {
     node: IAnyStateTreeNode;
     key: string;
 }
-/**
- * #stateModel ReferenceManagementSessionMixin
- */
 export declare function ReferenceManagementSessionMixin(_pluginManager: PluginManager): import("mobx-state-tree").IModelType<{}, {
-    /**
-     * #method
-     * See if any MST nodes currently have a types.reference to this object.
-     *
-     * @param object - object
-     * @returns An array where the first element is the node referring
-     * to the object and the second element is they property name the node is
-     * using to refer to the object
-     */
     getReferring(object: IAnyStateTreeNode): ReferringNode[];
 } & {
-    /**
-     * #action
-     */
     removeReferring(referring: ReferringNode[], track: BaseTrackConfig, callbacks: ((arg: string) => void)[], dereferenceTypeCount: Record<string, number>): void;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-/** Session mixin MST type for a session that manages multiple views */
 export type SessionWithReferenceManagementType = ReturnType<typeof ReferenceManagementSessionMixin>;
-/** Instance of a session with MST reference management (`getReferring()`, `removeReferring()`)  */
 export type SessionWithReferenceManagement = Instance<SessionWithReferenceManagementType>;
-/** Type guard for SessionWithReferenceManagement */
 export declare function isSessionWithReferenceManagement(thing: IAnyStateTreeNode): thing is SessionWithReferenceManagement;

package/dist/Session/ReferenceManagement.js

@@ -1,28 +1,14 @@
 "use strict";
-/** MST props, views, actions, etc related to managing connections */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.ReferenceManagementSessionMixin = ReferenceManagementSessionMixin;
 exports.isSessionWithReferenceManagement = isSessionWithReferenceManagement;
 const util_1 = require("@jbrowse/core/util");
 const mobx_state_tree_1 = require("mobx-state-tree");
-// locals
 const BaseSession_1 = require("./BaseSession");
-/**
- * #stateModel ReferenceManagementSessionMixin
- */
 function ReferenceManagementSessionMixin(_pluginManager) {
     return mobx_state_tree_1.types
         .model('ReferenceManagementSessionMixin', {})
         .views(self => ({
-        /**
-         * #method
-         * See if any MST nodes currently have a types.reference to this object.
-         *
-         * @param object - object
-         * @returns An array where the first element is the node referring
-         * to the object and the second element is they property name the node is
-         * using to refer to the object
-         */
         getReferring(object) {
             const refs = [];
             (0, mobx_state_tree_1.walk)((0, mobx_state_tree_1.getParent)(self), node => {
@@ -39,15 +25,10 @@ function ReferenceManagementSessionMixin(_pluginManager) {
         },
     }))
         .actions(self => ({
-        /**
-         * #action
-         */
         removeReferring(referring, track, callbacks, dereferenceTypeCount) {
             referring.forEach(({ node }) => {
                 let dereferenced = false;
                 try {
-                    // If a view is referring to the track config, remove the track
-                    // from the view
                     const type = 'open track(s)';
                     const view = (0, util_1.getContainingView)(node);
                     callbacks.push(() => {
@@ -60,11 +41,8 @@ function ReferenceManagementSessionMixin(_pluginManager) {
                     dereferenceTypeCount[type] += 1;
                 }
                 catch (err1) {
-                    // ignore
                 }
                 if ((0, util_1.isSessionModelWithWidgets)(self) && self.widgets.has(node.id)) {
-                    // If a configuration editor widget has the track config
-                    // open, close the widget
                     const type = 'configuration editor widget(s)';
                     if ((0, util_1.isSessionModelWithWidgets)(self)) {
                         callbacks.push(() => {
@@ -84,7 +62,6 @@ function ReferenceManagementSessionMixin(_pluginManager) {
         },
     }));
 }
-/** Type guard for SessionWithReferenceManagement */
 function isSessionWithReferenceManagement(thing) {
     return ((0, BaseSession_1.isBaseSession)(thing) &&
         'getReferring' in thing &&

package/dist/Session/SessionTracks.d.ts

@@ -1,17 +1,11 @@
-import { IAnyStateTreeNode, Instance } from 'mobx-state-tree';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { AnyConfiguration, AnyConfigurationModel } from '@jbrowse/core/configuration';
-/**
- * #stateModel SessionTracksManagerSessionMixin
- */
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { AnyConfiguration, AnyConfigurationModel } from '@jbrowse/core/configuration';
+import type { IAnyStateTreeNode, Instance } from 'mobx-state-tree';
 export declare function SessionTracksManagerSessionMixin(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     name: import("mobx-state-tree").ISimpleType<string>;
     margin: import("mobx-state-tree").IType<number | undefined, number, number>;
 } & {
-    /**
-     * #property
-     */
     sessionTracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
 }, {
     selection: unknown;
@@ -595,7 +589,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal;
+                stopToken?: string;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string;
@@ -603,7 +597,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal;
+                stopToken?: string;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string;
@@ -1117,7 +1111,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal;
+                stopToken?: string;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string;
@@ -1125,7 +1119,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal;
+                stopToken?: string;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string;
@@ -1656,7 +1650,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal;
+                stopToken?: string;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string;
@@ -1664,7 +1658,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, assemblyName: string | undefined, opts: {
-                signal?: AbortSignal;
+                stopToken?: string;
                 sessionId: string;
             }): Promise<{
                 [x: string]: string;
@@ -1763,9 +1757,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
     addTrackConf(trackConf: AnyConfiguration): any;
     deleteTrackConf(trackConf: AnyConfigurationModel): any;
 } & {
-    /**
-     * #getter
-     */
     readonly tracks: ({
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -1778,18 +1769,9 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
         } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
 } & {
-    /**
-     * #action
-     */
     addTrackConf(trackConf: AnyConfiguration): any;
-    /**
-     * #action
-     */
     deleteTrackConf(trackConf: AnyConfigurationModel): any;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-/** Session mixin MST type for a session that has `sessionTracks` */
 export type SessionWithSessionTracksType = ReturnType<typeof SessionTracksManagerSessionMixin>;
-/** Instance of a session that has `sessionTracks` */
 export type SessionWithSessionTracks = Instance<SessionWithSessionTracksType>;
-/** Type guard for SessionWithSessionTracks */
 export declare function isSessionWithSessionTracks(thing: IAnyStateTreeNode): thing is SessionWithSessionTracks;

package/dist/Session/SessionTracks.js

@@ -3,25 +3,15 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.SessionTracksManagerSessionMixin = SessionTracksManagerSessionMixin;
 exports.isSessionWithSessionTracks = isSessionWithSessionTracks;
 const mobx_state_tree_1 = require("mobx-state-tree");
-// locals
-const Tracks_1 = require("./Tracks");
 const BaseSession_1 = require("./BaseSession");
-/**
- * #stateModel SessionTracksManagerSessionMixin
- */
+const Tracks_1 = require("./Tracks");
 function SessionTracksManagerSessionMixin(pluginManager) {
     return (0, Tracks_1.TracksManagerSessionMixin)(pluginManager)
         .named('SessionTracksManagerSessionMixin')
         .props({
-        /**
-         * #property
-         */
         sessionTracks: mobx_state_tree_1.types.array(pluginManager.pluggableConfigSchemaType('track')),
     })
         .views(self => ({
-        /**
-         * #getter
-         */
         get tracks() {
             return [...self.sessionTracks, ...self.jbrowse.tracks];
         },
@@ -29,9 +19,6 @@ function SessionTracksManagerSessionMixin(pluginManager) {
         .actions(self => {
         const { addTrackConf: superAddTrackConf, deleteTrackConf: superDeleteTrackConf, } = self;
         return {
-            /**
-             * #action
-             */
             addTrackConf(trackConf) {
                 if (self.adminMode) {
                     return superAddTrackConf(trackConf);
@@ -47,17 +34,11 @@ function SessionTracksManagerSessionMixin(pluginManager) {
                 const length = self.sessionTracks.push(trackConf);
                 return self.sessionTracks[length - 1];
             },
-            /**
-             * #action
-             */
             deleteTrackConf(trackConf) {
-                // try to delete it in the main config if in admin mode
                 const found = superDeleteTrackConf(trackConf);
                 if (found) {
                     return found;
                 }
-                // if not found or not in admin mode, try to delete it in the
-                // sessionTracks
                 const { trackId } = trackConf;
                 const idx = self.sessionTracks.findIndex(t => t.trackId === trackId);
                 if (idx === -1) {
@@ -68,7 +49,6 @@ function SessionTracksManagerSessionMixin(pluginManager) {
         };
     });
 }
-/** Type guard for SessionWithSessionTracks */
 function isSessionWithSessionTracks(thing) {
     return (0, BaseSession_1.isBaseSession)(thing) && 'sessionTracks' in thing;
 }

package/dist/Session/Themes.d.ts

@@ -1,36 +1,18 @@
-import { IAnyStateTreeNode, Instance } from 'mobx-state-tree';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { ThemeOptions } from '@mui/material';
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { ThemeOptions } from '@mui/material';
+import type { IAnyStateTreeNode, Instance } from 'mobx-state-tree';
 type ThemeMap = Record<string, ThemeOptions>;
-/**
- * #stateModel ThemeManagerSessionMixin
- */
 export declare function ThemeManagerSessionMixin(_pluginManager: PluginManager): import("mobx-state-tree").IModelType<{}, {
     sessionThemeName: string;
 } & {
-    /**
-     * #method
-     */
     allThemes(): ThemeMap;
-    /**
-     * #getter
-     */
     readonly themeName: string;
-    /**
-     * #getter
-     */
     readonly theme: import("@mui/material").Theme;
 } & {
-    /**
-     * #action
-     */
     setThemeName(name: string): void;
     afterAttach(): void;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-/** Session mixin MST type for a session that supports theming */
 export type SessionWithThemesType = ReturnType<typeof ThemeManagerSessionMixin>;
-/** Instance of a session that has theming support */
 export type SessionWithThemes = Instance<SessionWithThemesType>;
-/** Type guard for SessionWithThemes */
 export declare function isSessionWithThemes(session: IAnyStateTreeNode): session is SessionWithThemes;
 export {};

package/dist/Session/Themes.js

@@ -2,14 +2,11 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.ThemeManagerSessionMixin = ThemeManagerSessionMixin;
 exports.isSessionWithThemes = isSessionWithThemes;
-const mobx_state_tree_1 = require("mobx-state-tree");
 const configuration_1 = require("@jbrowse/core/configuration");
 const ui_1 = require("@jbrowse/core/ui");
 const util_1 = require("@jbrowse/core/util");
 const mobx_1 = require("mobx");
-/**
- * #stateModel ThemeManagerSessionMixin
- */
+const mobx_state_tree_1 = require("mobx-state-tree");
 function ThemeManagerSessionMixin(_pluginManager) {
     return mobx_state_tree_1.types
         .model({})
@@ -17,25 +14,16 @@ function ThemeManagerSessionMixin(_pluginManager) {
         sessionThemeName: (0, util_1.localStorageGetItem)('themeName') || 'default',
     }))
         .views(s => ({
-        /**
-         * #method
-         */
         allThemes() {
             const self = s;
             const extraThemes = (0, configuration_1.getConf)(self.jbrowse, 'extraThemes');
             return { ...ui_1.defaultThemes, ...extraThemes };
         },
-        /**
-         * #getter
-         */
         get themeName() {
             const { sessionThemeName } = s;
             const all = this.allThemes();
             return all[sessionThemeName] ? sessionThemeName : 'default';
         },
-        /**
-         * #getter
-         */
         get theme() {
             const self = s;
             const configTheme = (0, configuration_1.getConf)(self.jbrowse, 'theme');
@@ -44,9 +32,6 @@ function ThemeManagerSessionMixin(_pluginManager) {
         },
     }))
         .actions(self => ({
-        /**
-         * #action
-         */
         setThemeName(name) {
             self.sessionThemeName = name;
         },
@@ -57,7 +42,6 @@ function ThemeManagerSessionMixin(_pluginManager) {
         },
     }));
 }
-/** Type guard for SessionWithThemes */
 function isSessionWithThemes(session) {
     return 'theme' in session;
 }