@jbrowse/product-core 2.15.4 → 2.16.1

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Files changed (13) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +0 -1
  2. package/dist/Session/MultipleViews.d.ts +0 -3
  3. package/dist/Session/SessionTracks.d.ts +0 -3
  4. package/dist/Session/Tracks.d.ts +0 -3
  5. package/dist/ui/AboutDialogContents.js +6 -4
  6. package/dist/ui/FileInfoPanel.js +6 -2
  7. package/esm/RootModel/BaseRootModel.d.ts +0 -1
  8. package/esm/Session/MultipleViews.d.ts +0 -3
  9. package/esm/Session/SessionTracks.d.ts +0 -3
  10. package/esm/Session/Tracks.d.ts +0 -3
  11. package/esm/ui/AboutDialogContents.js +3 -1
  12. package/esm/ui/FileInfoPanel.js +2 -1
  13. package/package.json +3 -4
package/dist/RootModel/BaseRootModel.d.ts CHANGED
@@ -555,7 +555,6 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
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  }, {
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  rpcManager: RpcManager;
package/dist/Session/MultipleViews.d.ts CHANGED
@@ -628,7 +628,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
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  assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
@@ -1155,7 +1154,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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  rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
@@ -1695,7 +1693,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
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  }, {
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  rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
package/dist/Session/SessionTracks.d.ts CHANGED
@@ -613,7 +613,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
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  assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
@@ -1136,7 +1135,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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  rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
@@ -1676,7 +1674,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
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  }, {
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  rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
package/dist/Session/Tracks.d.ts CHANGED
@@ -611,7 +611,6 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
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  assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
@@ -1134,7 +1133,6 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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  rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
@@ -1674,7 +1672,6 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
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  }, {
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  rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
package/dist/ui/AboutDialogContents.js CHANGED
@@ -34,7 +34,9 @@ const material_1 = require("@mui/material");
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  const mui_1 = require("tss-react/mui");
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  const configuration_1 = require("@jbrowse/core/configuration");
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  const util_1 = require("@jbrowse/core/util");
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- const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
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+ const Attributes_1 = __importDefault(require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Attributes"));
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+ const BaseCard_1 = __importDefault(require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard"));
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+ // locals
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  const FileInfoPanel_1 = __importDefault(require("./FileInfoPanel"));
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  const RefNameInfoDialog_1 = __importDefault(require("./RefNameInfoDialog"));
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  const useStyles = (0, mui_1.makeStyles)()({
@@ -74,7 +76,7 @@ const AboutDialogContents = (0, mobx_react_1.observer)(function ({ config, }) {
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  }, { session, config });
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  const ExtraPanel = pluginManager.evaluateExtensionPoint('Core-extraAboutPanel', null, { session, config });
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  return (react_1.default.createElement("div", { className: classes.content },
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- react_1.default.createElement(BaseFeatureDetail_1.BaseCard, { title: "Configuration" },
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+ react_1.default.createElement(BaseCard_1.default, { title: "Configuration" },
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  !hideUris ? (react_1.default.createElement("span", { className: classes.button },
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  react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
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  setShowRefNames(true);
@@ -87,8 +89,8 @@ const AboutDialogContents = (0, mobx_react_1.observer)(function ({ config, }) {
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  setCopied(false);
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  }, 1000);
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  } }, copied ? 'Copied to clipboard!' : 'Copy config'))) : null,
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- react_1.default.createElement(BaseFeatureDetail_1.Attributes, { attributes: confPostExt, omit: ['displays', 'baseUri', 'refNames', 'formatAbout'], hideUris: hideUris })),
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- ExtraPanel ? (react_1.default.createElement(BaseFeatureDetail_1.BaseCard, { title: ExtraPanel.name },
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+ react_1.default.createElement(Attributes_1.default, { attributes: confPostExt, omit: ['displays', 'baseUri', 'refNames', 'formatAbout'], hideUris: hideUris })),
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+ ExtraPanel ? (react_1.default.createElement(BaseCard_1.default, { title: ExtraPanel.name },
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  react_1.default.createElement(ExtraPanel.Component, { config: config }))) : null,
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  react_1.default.createElement(FileInfoPanel_1.default, { config: config }),
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  showRefNames ? (react_1.default.createElement(RefNameInfoDialog_1.default, { config: config, onClose: () => {
package/dist/ui/FileInfoPanel.js CHANGED
@@ -22,12 +22,16 @@ var __importStar = (this && this.__importStar) || function (mod) {
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  __setModuleDefault(result, mod);
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  return result;
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  };
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+ var __importDefault = (this && this.__importDefault) || function (mod) {
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+ return (mod && mod.__esModule) ? mod : { "default": mod };
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+ };
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  Object.defineProperty(exports, "__esModule", { value: true });
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  exports.default = FileInfoPanel;
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  const react_1 = __importStar(require("react"));
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  const configuration_1 = require("@jbrowse/core/configuration");
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  const util_1 = require("@jbrowse/core/util");
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- const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
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+ const Attributes_1 = __importDefault(require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Attributes"));
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+ const BaseCard_1 = __importDefault(require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard"));
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  const ui_1 = require("@jbrowse/core/ui");
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  function FileInfoPanel({ config, }) {
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  const [error, setError] = (0, react_1.useState)();
@@ -58,5 +62,5 @@ function FileInfoPanel({ config, }) {
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  .replaceAll('>', '&gt;')}</pre>`,
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  }
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  : info || {};
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- return (react_1.default.createElement(BaseFeatureDetail_1.BaseCard, { title: "File info" }, error ? (react_1.default.createElement(ui_1.ErrorMessage, { error: error })) : info === undefined ? (react_1.default.createElement(ui_1.LoadingEllipses, { message: "Loading file data" })) : (react_1.default.createElement(BaseFeatureDetail_1.Attributes, { attributes: details }))));
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+ return (react_1.default.createElement(BaseCard_1.default, { title: "File info" }, error ? (react_1.default.createElement(ui_1.ErrorMessage, { error: error })) : info === undefined ? (react_1.default.createElement(ui_1.LoadingEllipses, { message: "Loading file data" })) : (react_1.default.createElement(Attributes_1.default, { attributes: details }))));
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  }
package/esm/RootModel/BaseRootModel.d.ts CHANGED
@@ -555,7 +555,6 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
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  }, {
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  rpcManager: RpcManager;
package/esm/Session/MultipleViews.d.ts CHANGED
@@ -628,7 +628,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
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  assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
@@ -1155,7 +1154,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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  rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
@@ -1695,7 +1693,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
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  }, {
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  rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
package/esm/Session/SessionTracks.d.ts CHANGED
@@ -613,7 +613,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
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  assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
@@ -1136,7 +1135,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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  rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
@@ -1676,7 +1674,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
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  }, {
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  rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
package/esm/Session/Tracks.d.ts CHANGED
@@ -611,7 +611,6 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
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  addAssembly(configuration: any): void;
614
- replaceAssembly(idx: number, configuration: any): void;
615
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
616
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  assemblies: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
@@ -1134,7 +1133,6 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
1136
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  addAssembly(configuration: any): void;
1137
- replaceAssembly(idx: number, configuration: any): void;
1138
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>>;
1139
1137
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1140
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  rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
@@ -1674,7 +1672,6 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  afterAttach(): void;
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  removeAssembly(asm: import("@jbrowse/core/assemblyManager/assembly").Assembly): void;
1676
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  addAssembly(configuration: any): void;
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- replaceAssembly(idx: number, configuration: any): void;
1678
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
1679
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  }, {
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  rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
package/esm/ui/AboutDialogContents.js CHANGED
@@ -6,7 +6,9 @@ import { Button } from '@mui/material';
6
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  import { makeStyles } from 'tss-react/mui';
7
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  import { getConf, readConfObject, } from '@jbrowse/core/configuration';
8
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  import { getSession, getEnv } from '@jbrowse/core/util';
9
- import { BaseCard, Attributes, } from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail';
9
+ import Attributes from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Attributes';
10
+ import BaseCard from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard';
11
+ // locals
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  import FileInfoPanel from './FileInfoPanel';
11
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  import RefNameInfoDialog from './RefNameInfoDialog';
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  const useStyles = makeStyles()({
package/esm/ui/FileInfoPanel.js CHANGED
@@ -1,7 +1,8 @@
1
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  import React, { useState, useEffect } from 'react';
2
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  import { readConfObject, } from '@jbrowse/core/configuration';
3
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  import { getSession } from '@jbrowse/core/util';
4
- import { BaseCard, Attributes, } from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail';
4
+ import Attributes from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Attributes';
5
+ import BaseCard from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard';
5
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  import { ErrorMessage, LoadingEllipses } from '@jbrowse/core/ui';
6
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  export default function FileInfoPanel({ config, }) {
7
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  const [error, setError] = useState();
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
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  "name": "@jbrowse/product-core",
3
- "version": "2.15.4",
3
+ "version": "2.16.1",
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  "sideEffects": false,
5
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  "description": "JBrowse 2 code shared between products but not used by plugins",
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  "keywords": [
@@ -43,12 +43,11 @@
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  },
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  "dependencies": {
45
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  "@babel/runtime": "^7.16.3",
46
- "@jbrowse/core": "^2.15.4",
46
+ "@jbrowse/core": "^2.16.1",
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  "@mui/icons-material": "^6.0.0",
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  "@mui/material": "^6.0.0",
49
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  "copy-to-clipboard": "^3.3.1",
50
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  "librpc-web-mod": "^1.0.0",
51
- "react-error-boundary": "^4.0.3",
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  "serialize-error": "^8.0.0"
53
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  },
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  "peerDependencies": {
@@ -63,5 +62,5 @@
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  "publishConfig": {
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  "access": "public"
65
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  },
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- "gitHead": "686b4ad9016b3586e8230180f7adb44c238ba4fb"
65
+ "gitHead": "c6a658d2344989895543f0456b1cf7dd3b937769"
67
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  }