@jbrowse/product-core 2.15.0 → 2.15.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (11) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +63 -35
  2. package/dist/Session/MultipleViews.d.ts +204 -112
  3. package/dist/Session/SessionTracks.d.ts +198 -110
  4. package/dist/Session/Tracks.d.ts +198 -110
  5. package/dist/ui/RefNameInfoDialog.js +9 -7
  6. package/esm/RootModel/BaseRootModel.d.ts +63 -35
  7. package/esm/Session/MultipleViews.d.ts +204 -112
  8. package/esm/Session/SessionTracks.d.ts +198 -110
  9. package/esm/Session/Tracks.d.ts +198 -110
  10. package/esm/ui/RefNameInfoDialog.js +11 -9
  11. package/package.json +3 -3
package/dist/RootModel/BaseRootModel.d.ts CHANGED
@@ -43,11 +43,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
43
43
  refNameAliases: {
44
44
  [x: string]: string;
45
45
  } | undefined;
46
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
47
- } & {
48
- readonly lowerCaseRefNameAliases: {
49
- [k: string]: string;
46
+ lowerCaseRefNameAliases: {
47
+ [x: string]: string;
50
48
  } | undefined;
49
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
51
50
  } & {
52
51
  getConf(arg: string): any;
53
52
  } & {
@@ -70,17 +69,22 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
70
69
  getRefNameColor(refName: string): string | undefined;
71
70
  isValidRefName(refName: string): boolean;
72
71
  } & {
73
- setLoaded({ regions, refNameAliases, cytobands, }: {
72
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
74
73
  regions: import("@jbrowse/core/util").Region[];
75
74
  refNameAliases: {
76
75
  [x: string]: string;
77
76
  };
77
+ lowerCaseRefNameAliases: {
78
+ [x: string]: string;
79
+ };
78
80
  cytobands: import("@jbrowse/core/util").Feature[];
79
81
  }): void;
80
82
  setError(e: unknown): void;
81
83
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
82
84
  setRefNameAliases(aliases: {
83
85
  [x: string]: string;
86
+ }, lowerCaseAliases: {
87
+ [x: string]: string;
84
88
  }): void;
85
89
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
86
90
  setLoadingP(p?: Promise<void>): void;
@@ -111,11 +115,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
111
115
  refNameAliases: {
112
116
  [x: string]: string;
113
117
  } | undefined;
114
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
115
- } & {
116
- readonly lowerCaseRefNameAliases: {
117
- [k: string]: string;
118
+ lowerCaseRefNameAliases: {
119
+ [x: string]: string;
118
120
  } | undefined;
121
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
119
122
  } & {
120
123
  getConf(arg: string): any;
121
124
  } & {
@@ -138,17 +141,22 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
138
141
  getRefNameColor(refName: string): string | undefined;
139
142
  isValidRefName(refName: string): boolean;
140
143
  } & {
141
- setLoaded({ regions, refNameAliases, cytobands, }: {
144
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
142
145
  regions: import("@jbrowse/core/util").Region[];
143
146
  refNameAliases: {
144
147
  [x: string]: string;
145
148
  };
149
+ lowerCaseRefNameAliases: {
150
+ [x: string]: string;
151
+ };
146
152
  cytobands: import("@jbrowse/core/util").Feature[];
147
153
  }): void;
148
154
  setError(e: unknown): void;
149
155
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
150
156
  setRefNameAliases(aliases: {
151
157
  [x: string]: string;
158
+ }, lowerCaseAliases: {
159
+ [x: string]: string;
152
160
  }): void;
153
161
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
154
162
  setLoadingP(p?: Promise<void>): void;
@@ -177,11 +185,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
177
185
  refNameAliases: {
178
186
  [x: string]: string;
179
187
  } | undefined;
180
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
181
- } & {
182
- readonly lowerCaseRefNameAliases: {
183
- [k: string]: string;
188
+ lowerCaseRefNameAliases: {
189
+ [x: string]: string;
184
190
  } | undefined;
191
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
185
192
  } & {
186
193
  getConf(arg: string): any;
187
194
  } & {
@@ -204,17 +211,22 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
204
211
  getRefNameColor(refName: string): string | undefined;
205
212
  isValidRefName(refName: string): boolean;
206
213
  } & {
207
- setLoaded({ regions, refNameAliases, cytobands, }: {
214
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
208
215
  regions: import("@jbrowse/core/util").Region[];
209
216
  refNameAliases: {
210
217
  [x: string]: string;
211
218
  };
219
+ lowerCaseRefNameAliases: {
220
+ [x: string]: string;
221
+ };
212
222
  cytobands: import("@jbrowse/core/util").Feature[];
213
223
  }): void;
214
224
  setError(e: unknown): void;
215
225
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
216
226
  setRefNameAliases(aliases: {
217
227
  [x: string]: string;
228
+ }, lowerCaseAliases: {
229
+ [x: string]: string;
218
230
  }): void;
219
231
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
220
232
  setLoadingP(p?: Promise<void>): void;
@@ -245,11 +257,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
245
257
  refNameAliases: {
246
258
  [x: string]: string;
247
259
  } | undefined;
248
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
249
- } & {
250
- readonly lowerCaseRefNameAliases: {
251
- [k: string]: string;
260
+ lowerCaseRefNameAliases: {
261
+ [x: string]: string;
252
262
  } | undefined;
263
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
253
264
  } & {
254
265
  getConf(arg: string): any;
255
266
  } & {
@@ -272,17 +283,22 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
272
283
  getRefNameColor(refName: string): string | undefined;
273
284
  isValidRefName(refName: string): boolean;
274
285
  } & {
275
- setLoaded({ regions, refNameAliases, cytobands, }: {
286
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
276
287
  regions: import("@jbrowse/core/util").Region[];
277
288
  refNameAliases: {
278
289
  [x: string]: string;
279
290
  };
291
+ lowerCaseRefNameAliases: {
292
+ [x: string]: string;
293
+ };
280
294
  cytobands: import("@jbrowse/core/util").Feature[];
281
295
  }): void;
282
296
  setError(e: unknown): void;
283
297
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
284
298
  setRefNameAliases(aliases: {
285
299
  [x: string]: string;
300
+ }, lowerCaseAliases: {
301
+ [x: string]: string;
286
302
  }): void;
287
303
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
288
304
  setLoadingP(p?: Promise<void>): void;
@@ -311,11 +327,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
311
327
  refNameAliases: {
312
328
  [x: string]: string;
313
329
  } | undefined;
314
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
315
- } & {
316
- readonly lowerCaseRefNameAliases: {
317
- [k: string]: string;
330
+ lowerCaseRefNameAliases: {
331
+ [x: string]: string;
318
332
  } | undefined;
333
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
319
334
  } & {
320
335
  getConf(arg: string): any;
321
336
  } & {
@@ -338,17 +353,22 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
338
353
  getRefNameColor(refName: string): string | undefined;
339
354
  isValidRefName(refName: string): boolean;
340
355
  } & {
341
- setLoaded({ regions, refNameAliases, cytobands, }: {
356
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
342
357
  regions: import("@jbrowse/core/util").Region[];
343
358
  refNameAliases: {
344
359
  [x: string]: string;
345
360
  };
361
+ lowerCaseRefNameAliases: {
362
+ [x: string]: string;
363
+ };
346
364
  cytobands: import("@jbrowse/core/util").Feature[];
347
365
  }): void;
348
366
  setError(e: unknown): void;
349
367
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
350
368
  setRefNameAliases(aliases: {
351
369
  [x: string]: string;
370
+ }, lowerCaseAliases: {
371
+ [x: string]: string;
352
372
  }): void;
353
373
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
354
374
  setLoadingP(p?: Promise<void>): void;
@@ -382,11 +402,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
382
402
  refNameAliases: {
383
403
  [x: string]: string;
384
404
  } | undefined;
385
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
386
- } & {
387
- readonly lowerCaseRefNameAliases: {
388
- [k: string]: string;
405
+ lowerCaseRefNameAliases: {
406
+ [x: string]: string;
389
407
  } | undefined;
408
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
390
409
  } & {
391
410
  getConf(arg: string): any;
392
411
  } & {
@@ -409,17 +428,22 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
409
428
  getRefNameColor(refName: string): string | undefined;
410
429
  isValidRefName(refName: string): boolean;
411
430
  } & {
412
- setLoaded({ regions, refNameAliases, cytobands, }: {
431
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
413
432
  regions: import("@jbrowse/core/util").Region[];
414
433
  refNameAliases: {
415
434
  [x: string]: string;
416
435
  };
436
+ lowerCaseRefNameAliases: {
437
+ [x: string]: string;
438
+ };
417
439
  cytobands: import("@jbrowse/core/util").Feature[];
418
440
  }): void;
419
441
  setError(e: unknown): void;
420
442
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
421
443
  setRefNameAliases(aliases: {
422
444
  [x: string]: string;
445
+ }, lowerCaseAliases: {
446
+ [x: string]: string;
423
447
  }): void;
424
448
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
425
449
  setLoadingP(p?: Promise<void>): void;
@@ -448,11 +472,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
448
472
  refNameAliases: {
449
473
  [x: string]: string;
450
474
  } | undefined;
451
- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
452
- } & {
453
- readonly lowerCaseRefNameAliases: {
454
- [k: string]: string;
475
+ lowerCaseRefNameAliases: {
476
+ [x: string]: string;
455
477
  } | undefined;
478
+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
456
479
  } & {
457
480
  getConf(arg: string): any;
458
481
  } & {
@@ -475,17 +498,22 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
475
498
  getRefNameColor(refName: string): string | undefined;
476
499
  isValidRefName(refName: string): boolean;
477
500
  } & {
478
- setLoaded({ regions, refNameAliases, cytobands, }: {
501
+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
479
502
  regions: import("@jbrowse/core/util").Region[];
480
503
  refNameAliases: {
481
504
  [x: string]: string;
482
505
  };
506
+ lowerCaseRefNameAliases: {
507
+ [x: string]: string;
508
+ };
483
509
  cytobands: import("@jbrowse/core/util").Feature[];
484
510
  }): void;
485
511
  setError(e: unknown): void;
486
512
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
487
513
  setRefNameAliases(aliases: {
488
514
  [x: string]: string;
515
+ }, lowerCaseAliases: {
516
+ [x: string]: string;
489
517
  }): void;
490
518
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
491
519
  setLoadingP(p?: Promise<void>): void;