@jbrowse/product-core 2.14.0 → 2.15.1

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Files changed (11) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +63 -35
  2. package/dist/Session/MultipleViews.d.ts +204 -112
  3. package/dist/Session/SessionTracks.d.ts +198 -110
  4. package/dist/Session/Tracks.d.ts +198 -110
  5. package/dist/ui/RefNameInfoDialog.js +9 -7
  6. package/esm/RootModel/BaseRootModel.d.ts +63 -35
  7. package/esm/Session/MultipleViews.d.ts +204 -112
  8. package/esm/Session/SessionTracks.d.ts +198 -110
  9. package/esm/Session/Tracks.d.ts +198 -110
  10. package/esm/ui/RefNameInfoDialog.js +11 -9
  11. package/package.json +5 -5
package/dist/RootModel/BaseRootModel.d.ts CHANGED
@@ -43,11 +43,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -70,17 +69,22 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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+ }, lowerCaseAliases: {
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -111,11 +115,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -138,17 +141,22 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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+ }, lowerCaseAliases: {
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -177,11 +185,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -204,17 +211,22 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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+ }, lowerCaseAliases: {
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -245,11 +257,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -272,17 +283,22 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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+ }, lowerCaseAliases: {
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -311,11 +327,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -338,17 +353,22 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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+ }, lowerCaseAliases: {
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -382,11 +402,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -409,17 +428,22 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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+ }, lowerCaseAliases: {
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -448,11 +472,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  refNameAliases: {
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  [x: string]: string;
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  } | undefined;
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- cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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- } & {
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- readonly lowerCaseRefNameAliases: {
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- [k: string]: string;
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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  } | undefined;
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+ cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -475,17 +498,22 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
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  } & {
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- setLoaded({ regions, refNameAliases, cytobands, }: {
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+ setLoaded({ regions, refNameAliases, lowerCaseRefNameAliases, cytobands, }: {
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  regions: import("@jbrowse/core/util").Region[];
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  refNameAliases: {
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  [x: string]: string;
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  };
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+ lowerCaseRefNameAliases: {
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+ [x: string]: string;
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+ };
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  cytobands: import("@jbrowse/core/util").Feature[];
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  }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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  [x: string]: string;
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+ }, lowerCaseAliases: {
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;