@jbrowse/product-core 2.13.1 → 2.14.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (35) hide show
  1. package/dist/RootModel/BaseRootModel.d.ts +110 -84
  2. package/dist/RootModel/InternetAccounts.d.ts +1 -1
  3. package/dist/RootModel/InternetAccounts.js +1 -2
  4. package/dist/Session/BaseSession.d.ts +6 -2
  5. package/dist/Session/Connections.d.ts +71 -11
  6. package/dist/Session/Connections.js +3 -1
  7. package/dist/Session/DialogQueue.d.ts +1 -1
  8. package/dist/Session/MultipleViews.d.ts +354 -266
  9. package/dist/Session/ReferenceManagement.d.ts +1 -1
  10. package/dist/Session/ReferenceManagement.js +6 -2
  11. package/dist/Session/SessionTracks.d.ts +344 -258
  12. package/dist/Session/Tracks.d.ts +343 -255
  13. package/dist/Session/Tracks.js +3 -1
  14. package/dist/ui/AboutDialogContents.js +9 -3
  15. package/dist/ui/FileInfoPanel.d.ts +1 -1
  16. package/dist/ui/FileInfoPanel.js +1 -1
  17. package/dist/ui/RefNameInfoDialog.js +5 -3
  18. package/esm/RootModel/BaseRootModel.d.ts +110 -84
  19. package/esm/RootModel/InternetAccounts.d.ts +1 -1
  20. package/esm/RootModel/InternetAccounts.js +1 -2
  21. package/esm/Session/BaseSession.d.ts +6 -2
  22. package/esm/Session/Connections.d.ts +71 -11
  23. package/esm/Session/Connections.js +3 -1
  24. package/esm/Session/DialogQueue.d.ts +1 -1
  25. package/esm/Session/MultipleViews.d.ts +354 -266
  26. package/esm/Session/ReferenceManagement.d.ts +1 -1
  27. package/esm/Session/ReferenceManagement.js +6 -2
  28. package/esm/Session/SessionTracks.d.ts +344 -258
  29. package/esm/Session/Tracks.d.ts +343 -255
  30. package/esm/Session/Tracks.js +3 -1
  31. package/esm/ui/AboutDialogContents.js +9 -3
  32. package/esm/ui/FileInfoPanel.d.ts +1 -1
  33. package/esm/ui/FileInfoPanel.js +1 -1
  34. package/esm/ui/RefNameInfoDialog.js +5 -3
  35. package/package.json +4 -4
package/dist/Session/Tracks.d.ts CHANGED
@@ -24,16 +24,16 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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  }, {
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  error: unknown;
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- loaded: boolean;
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  loadingP: Promise<void> | undefined;
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  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  refNameAliases: {
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- [x: string]: string | undefined;
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- } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string | undefined;
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+ [x: string]: string;
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  } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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+ } & {
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+ readonly lowerCaseRefNameAliases: {
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+ [k: string]: string;
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+ } | undefined;
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  } & {
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  getConf(arg: string): any;
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  } & {
@@ -56,13 +56,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
58
58
  } & {
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- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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+ regions: import("@jbrowse/core/util").Region[];
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+ refNameAliases: {
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+ [x: string]: string;
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+ };
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+ cytobands: import("@jbrowse/core/util").Feature[];
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+ }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
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  setRefNameAliases(aliases: {
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- [x: string]: string | undefined;
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- }, lcAliases: {
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- [x: string]: string | undefined;
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
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  setLoadingP(p?: Promise<void>): void;
@@ -75,27 +79,27 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameMapForAdapter(adapterConf: {
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  [x: string]: unknown;
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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- [x: string]: string | undefined;
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+ [x: string]: string;
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  }>;
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  getReverseRefNameMapForAdapter(adapterConf: {
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  [x: string]: unknown;
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
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- [x: string]: string | undefined;
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+ [x: string]: string;
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  }>;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
87
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  }, {
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  error: unknown;
89
- loaded: boolean;
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  loadingP: Promise<void> | undefined;
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  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
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  refNameAliases: {
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- [x: string]: string | undefined;
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- } | undefined;
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- lowerCaseRefNameAliases: {
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- [x: string]: string | undefined;
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+ [x: string]: string;
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  } | undefined;
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
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+ } & {
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+ readonly lowerCaseRefNameAliases: {
101
+ [k: string]: string;
102
+ } | undefined;
99
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  } & {
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  getConf(arg: string): any;
101
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  } & {
@@ -118,13 +122,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
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  getRefNameColor(refName: string): string | undefined;
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  isValidRefName(refName: string): boolean;
120
124
  } & {
121
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
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+ setLoaded({ regions, refNameAliases, cytobands, }: {
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+ regions: import("@jbrowse/core/util").Region[];
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+ refNameAliases: {
128
+ [x: string]: string;
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+ };
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+ cytobands: import("@jbrowse/core/util").Feature[];
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+ }): void;
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  setError(e: unknown): void;
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  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
124
134
  setRefNameAliases(aliases: {
125
- [x: string]: string | undefined;
126
- }, lcAliases: {
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- [x: string]: string | undefined;
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+ [x: string]: string;
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  }): void;
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  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
130
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  setLoadingP(p?: Promise<void>): void;
@@ -137,29 +145,29 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
137
145
  getRefNameMapForAdapter(adapterConf: {
138
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  [x: string]: unknown;
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
140
- [x: string]: string | undefined;
148
+ [x: string]: string;
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  }>;
142
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  getReverseRefNameMapForAdapter(adapterConf: {
143
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  [x: string]: unknown;
144
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  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
145
- [x: string]: string | undefined;
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+ [x: string]: string;
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  }>;
147
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
148
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
149
- readonly assemblyNameMap: Record<string, ({
157
+ readonly assemblyNameMap: Record<string, {
150
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  configuration: any;
151
159
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
152
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  error: unknown;
153
- loaded: boolean;
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  loadingP: Promise<void> | undefined;
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  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
156
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  refNameAliases: {
157
- [x: string]: string | undefined;
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- } | undefined;
159
- lowerCaseRefNameAliases: {
160
- [x: string]: string | undefined;
164
+ [x: string]: string;
161
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  } | undefined;
162
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
167
+ } & {
168
+ readonly lowerCaseRefNameAliases: {
169
+ [k: string]: string;
170
+ } | undefined;
163
171
  } & {
164
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  getConf(arg: string): any;
165
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  } & {
@@ -182,13 +190,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
182
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  getRefNameColor(refName: string): string | undefined;
183
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  isValidRefName(refName: string): boolean;
184
192
  } & {
185
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
193
+ setLoaded({ regions, refNameAliases, cytobands, }: {
194
+ regions: import("@jbrowse/core/util").Region[];
195
+ refNameAliases: {
196
+ [x: string]: string;
197
+ };
198
+ cytobands: import("@jbrowse/core/util").Feature[];
199
+ }): void;
186
200
  setError(e: unknown): void;
187
201
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
188
202
  setRefNameAliases(aliases: {
189
- [x: string]: string | undefined;
190
- }, lcAliases: {
191
- [x: string]: string | undefined;
203
+ [x: string]: string;
192
204
  }): void;
193
205
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
194
206
  setLoadingP(p?: Promise<void>): void;
@@ -201,27 +213,27 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
201
213
  getRefNameMapForAdapter(adapterConf: {
202
214
  [x: string]: unknown;
203
215
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
204
- [x: string]: string | undefined;
216
+ [x: string]: string;
205
217
  }>;
206
218
  getReverseRefNameMapForAdapter(adapterConf: {
207
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  [x: string]: unknown;
208
220
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
209
- [x: string]: string | undefined;
221
+ [x: string]: string;
210
222
  }>;
211
223
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
212
224
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
213
225
  }, {
214
226
  error: unknown;
215
- loaded: boolean;
216
227
  loadingP: Promise<void> | undefined;
217
228
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
218
229
  refNameAliases: {
219
- [x: string]: string | undefined;
220
- } | undefined;
221
- lowerCaseRefNameAliases: {
222
- [x: string]: string | undefined;
230
+ [x: string]: string;
223
231
  } | undefined;
224
232
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
233
+ } & {
234
+ readonly lowerCaseRefNameAliases: {
235
+ [k: string]: string;
236
+ } | undefined;
225
237
  } & {
226
238
  getConf(arg: string): any;
227
239
  } & {
@@ -244,13 +256,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
244
256
  getRefNameColor(refName: string): string | undefined;
245
257
  isValidRefName(refName: string): boolean;
246
258
  } & {
247
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
259
+ setLoaded({ regions, refNameAliases, cytobands, }: {
260
+ regions: import("@jbrowse/core/util").Region[];
261
+ refNameAliases: {
262
+ [x: string]: string;
263
+ };
264
+ cytobands: import("@jbrowse/core/util").Feature[];
265
+ }): void;
248
266
  setError(e: unknown): void;
249
267
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
250
268
  setRefNameAliases(aliases: {
251
- [x: string]: string | undefined;
252
- }, lcAliases: {
253
- [x: string]: string | undefined;
269
+ [x: string]: string;
254
270
  }): void;
255
271
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
256
272
  setLoadingP(p?: Promise<void>): void;
@@ -263,29 +279,29 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
263
279
  getRefNameMapForAdapter(adapterConf: {
264
280
  [x: string]: unknown;
265
281
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
266
- [x: string]: string | undefined;
282
+ [x: string]: string;
267
283
  }>;
268
284
  getReverseRefNameMapForAdapter(adapterConf: {
269
285
  [x: string]: unknown;
270
286
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
271
- [x: string]: string | undefined;
287
+ [x: string]: string;
272
288
  }>;
273
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
289
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
274
290
  } & {
275
291
  get(asmName: string): ({
276
292
  configuration: any;
277
293
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
278
294
  error: unknown;
279
- loaded: boolean;
280
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  loadingP: Promise<void> | undefined;
281
296
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
282
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  refNameAliases: {
283
- [x: string]: string | undefined;
284
- } | undefined;
285
- lowerCaseRefNameAliases: {
286
- [x: string]: string | undefined;
298
+ [x: string]: string;
287
299
  } | undefined;
288
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  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
301
+ } & {
302
+ readonly lowerCaseRefNameAliases: {
303
+ [k: string]: string;
304
+ } | undefined;
289
305
  } & {
290
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  getConf(arg: string): any;
291
307
  } & {
@@ -308,13 +324,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
308
324
  getRefNameColor(refName: string): string | undefined;
309
325
  isValidRefName(refName: string): boolean;
310
326
  } & {
311
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
327
+ setLoaded({ regions, refNameAliases, cytobands, }: {
328
+ regions: import("@jbrowse/core/util").Region[];
329
+ refNameAliases: {
330
+ [x: string]: string;
331
+ };
332
+ cytobands: import("@jbrowse/core/util").Feature[];
333
+ }): void;
312
334
  setError(e: unknown): void;
313
335
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
314
336
  setRefNameAliases(aliases: {
315
- [x: string]: string | undefined;
316
- }, lcAliases: {
317
- [x: string]: string | undefined;
337
+ [x: string]: string;
318
338
  }): void;
319
339
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
320
340
  setLoadingP(p?: Promise<void>): void;
@@ -327,27 +347,27 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
327
347
  getRefNameMapForAdapter(adapterConf: {
328
348
  [x: string]: unknown;
329
349
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
330
- [x: string]: string | undefined;
350
+ [x: string]: string;
331
351
  }>;
332
352
  getReverseRefNameMapForAdapter(adapterConf: {
333
353
  [x: string]: unknown;
334
354
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
335
- [x: string]: string | undefined;
355
+ [x: string]: string;
336
356
  }>;
337
357
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
338
358
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
339
359
  }, {
340
360
  error: unknown;
341
- loaded: boolean;
342
361
  loadingP: Promise<void> | undefined;
343
362
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
344
363
  refNameAliases: {
345
- [x: string]: string | undefined;
346
- } | undefined;
347
- lowerCaseRefNameAliases: {
348
- [x: string]: string | undefined;
364
+ [x: string]: string;
349
365
  } | undefined;
350
366
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
367
+ } & {
368
+ readonly lowerCaseRefNameAliases: {
369
+ [k: string]: string;
370
+ } | undefined;
351
371
  } & {
352
372
  getConf(arg: string): any;
353
373
  } & {
@@ -370,13 +390,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
370
390
  getRefNameColor(refName: string): string | undefined;
371
391
  isValidRefName(refName: string): boolean;
372
392
  } & {
373
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
393
+ setLoaded({ regions, refNameAliases, cytobands, }: {
394
+ regions: import("@jbrowse/core/util").Region[];
395
+ refNameAliases: {
396
+ [x: string]: string;
397
+ };
398
+ cytobands: import("@jbrowse/core/util").Feature[];
399
+ }): void;
374
400
  setError(e: unknown): void;
375
401
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
376
402
  setRefNameAliases(aliases: {
377
- [x: string]: string | undefined;
378
- }, lcAliases: {
379
- [x: string]: string | undefined;
403
+ [x: string]: string;
380
404
  }): void;
381
405
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
382
406
  setLoadingP(p?: Promise<void>): void;
@@ -389,12 +413,12 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
389
413
  getRefNameMapForAdapter(adapterConf: {
390
414
  [x: string]: unknown;
391
415
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
392
- [x: string]: string | undefined;
416
+ [x: string]: string;
393
417
  }>;
394
418
  getReverseRefNameMapForAdapter(adapterConf: {
395
419
  [x: string]: unknown;
396
420
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
397
- [x: string]: string | undefined;
421
+ [x: string]: string;
398
422
  }>;
399
423
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
400
424
  readonly assemblyNamesList: any[];
@@ -405,16 +429,16 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
405
429
  configuration: any;
406
430
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
407
431
  error: unknown;
408
- loaded: boolean;
409
432
  loadingP: Promise<void> | undefined;
410
433
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
411
434
  refNameAliases: {
412
- [x: string]: string | undefined;
413
- } | undefined;
414
- lowerCaseRefNameAliases: {
415
- [x: string]: string | undefined;
435
+ [x: string]: string;
416
436
  } | undefined;
417
437
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
438
+ } & {
439
+ readonly lowerCaseRefNameAliases: {
440
+ [k: string]: string;
441
+ } | undefined;
418
442
  } & {
419
443
  getConf(arg: string): any;
420
444
  } & {
@@ -437,13 +461,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
437
461
  getRefNameColor(refName: string): string | undefined;
438
462
  isValidRefName(refName: string): boolean;
439
463
  } & {
440
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
464
+ setLoaded({ regions, refNameAliases, cytobands, }: {
465
+ regions: import("@jbrowse/core/util").Region[];
466
+ refNameAliases: {
467
+ [x: string]: string;
468
+ };
469
+ cytobands: import("@jbrowse/core/util").Feature[];
470
+ }): void;
441
471
  setError(e: unknown): void;
442
472
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
443
473
  setRefNameAliases(aliases: {
444
- [x: string]: string | undefined;
445
- }, lcAliases: {
446
- [x: string]: string | undefined;
474
+ [x: string]: string;
447
475
  }): void;
448
476
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
449
477
  setLoadingP(p?: Promise<void>): void;
@@ -456,27 +484,27 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
456
484
  getRefNameMapForAdapter(adapterConf: {
457
485
  [x: string]: unknown;
458
486
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
459
- [x: string]: string | undefined;
487
+ [x: string]: string;
460
488
  }>;
461
489
  getReverseRefNameMapForAdapter(adapterConf: {
462
490
  [x: string]: unknown;
463
491
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
464
- [x: string]: string | undefined;
492
+ [x: string]: string;
465
493
  }>;
466
494
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
467
495
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
468
496
  }, {
469
497
  error: unknown;
470
- loaded: boolean;
471
498
  loadingP: Promise<void> | undefined;
472
499
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
473
500
  refNameAliases: {
474
- [x: string]: string | undefined;
475
- } | undefined;
476
- lowerCaseRefNameAliases: {
477
- [x: string]: string | undefined;
501
+ [x: string]: string;
478
502
  } | undefined;
479
503
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
504
+ } & {
505
+ readonly lowerCaseRefNameAliases: {
506
+ [k: string]: string;
507
+ } | undefined;
480
508
  } & {
481
509
  getConf(arg: string): any;
482
510
  } & {
@@ -499,13 +527,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
499
527
  getRefNameColor(refName: string): string | undefined;
500
528
  isValidRefName(refName: string): boolean;
501
529
  } & {
502
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
530
+ setLoaded({ regions, refNameAliases, cytobands, }: {
531
+ regions: import("@jbrowse/core/util").Region[];
532
+ refNameAliases: {
533
+ [x: string]: string;
534
+ };
535
+ cytobands: import("@jbrowse/core/util").Feature[];
536
+ }): void;
503
537
  setError(e: unknown): void;
504
538
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
505
539
  setRefNameAliases(aliases: {
506
- [x: string]: string | undefined;
507
- }, lcAliases: {
508
- [x: string]: string | undefined;
540
+ [x: string]: string;
509
541
  }): void;
510
542
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
511
543
  setLoadingP(p?: Promise<void>): void;
@@ -518,12 +550,12 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
518
550
  getRefNameMapForAdapter(adapterConf: {
519
551
  [x: string]: unknown;
520
552
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
521
- [x: string]: string | undefined;
553
+ [x: string]: string;
522
554
  }>;
523
555
  getReverseRefNameMapForAdapter(adapterConf: {
524
556
  [x: string]: unknown;
525
557
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
526
- [x: string]: string | undefined;
558
+ [x: string]: string;
527
559
  }>;
528
560
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
529
561
  getRefNameMapForAdapter(adapterConf: {
@@ -532,7 +564,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
532
564
  signal?: AbortSignal;
533
565
  sessionId: string;
534
566
  }): Promise<{
535
- [x: string]: string | undefined;
567
+ [x: string]: string;
536
568
  } | undefined>;
537
569
  getReverseRefNameMapForAdapter(adapterConf: {
538
570
  [x: string]: unknown;
@@ -540,7 +572,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
540
572
  signal?: AbortSignal;
541
573
  sessionId: string;
542
574
  }): Promise<{
543
- [x: string]: string | undefined;
575
+ [x: string]: string;
544
576
  } | undefined>;
545
577
  isValidRefName(refName: string, assemblyName: string): boolean;
546
578
  } & {
@@ -553,16 +585,16 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
553
585
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
554
586
  }, {
555
587
  error: unknown;
556
- loaded: boolean;
557
588
  loadingP: Promise<void> | undefined;
558
589
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
559
590
  refNameAliases: {
560
- [x: string]: string | undefined;
561
- } | undefined;
562
- lowerCaseRefNameAliases: {
563
- [x: string]: string | undefined;
591
+ [x: string]: string;
564
592
  } | undefined;
565
593
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
594
+ } & {
595
+ readonly lowerCaseRefNameAliases: {
596
+ [k: string]: string;
597
+ } | undefined;
566
598
  } & {
567
599
  getConf(arg: string): any;
568
600
  } & {
@@ -585,13 +617,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
585
617
  getRefNameColor(refName: string): string | undefined;
586
618
  isValidRefName(refName: string): boolean;
587
619
  } & {
588
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
620
+ setLoaded({ regions, refNameAliases, cytobands, }: {
621
+ regions: import("@jbrowse/core/util").Region[];
622
+ refNameAliases: {
623
+ [x: string]: string;
624
+ };
625
+ cytobands: import("@jbrowse/core/util").Feature[];
626
+ }): void;
589
627
  setError(e: unknown): void;
590
628
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
591
629
  setRefNameAliases(aliases: {
592
- [x: string]: string | undefined;
593
- }, lcAliases: {
594
- [x: string]: string | undefined;
630
+ [x: string]: string;
595
631
  }): void;
596
632
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
597
633
  setLoadingP(p?: Promise<void>): void;
@@ -604,29 +640,29 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
604
640
  getRefNameMapForAdapter(adapterConf: {
605
641
  [x: string]: unknown;
606
642
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
607
- [x: string]: string | undefined;
643
+ [x: string]: string;
608
644
  }>;
609
645
  getReverseRefNameMapForAdapter(adapterConf: {
610
646
  [x: string]: unknown;
611
647
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
612
- [x: string]: string | undefined;
648
+ [x: string]: string;
613
649
  }>;
614
650
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
615
651
  }, {
616
- readonly assemblyNameMap: Record<string, ({
652
+ readonly assemblyNameMap: Record<string, {
617
653
  configuration: any;
618
654
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
619
655
  error: unknown;
620
- loaded: boolean;
621
656
  loadingP: Promise<void> | undefined;
622
657
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
623
658
  refNameAliases: {
624
- [x: string]: string | undefined;
625
- } | undefined;
626
- lowerCaseRefNameAliases: {
627
- [x: string]: string | undefined;
659
+ [x: string]: string;
628
660
  } | undefined;
629
661
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
662
+ } & {
663
+ readonly lowerCaseRefNameAliases: {
664
+ [k: string]: string;
665
+ } | undefined;
630
666
  } & {
631
667
  getConf(arg: string): any;
632
668
  } & {
@@ -649,13 +685,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
649
685
  getRefNameColor(refName: string): string | undefined;
650
686
  isValidRefName(refName: string): boolean;
651
687
  } & {
652
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
688
+ setLoaded({ regions, refNameAliases, cytobands, }: {
689
+ regions: import("@jbrowse/core/util").Region[];
690
+ refNameAliases: {
691
+ [x: string]: string;
692
+ };
693
+ cytobands: import("@jbrowse/core/util").Feature[];
694
+ }): void;
653
695
  setError(e: unknown): void;
654
696
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
655
697
  setRefNameAliases(aliases: {
656
- [x: string]: string | undefined;
657
- }, lcAliases: {
658
- [x: string]: string | undefined;
698
+ [x: string]: string;
659
699
  }): void;
660
700
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
661
701
  setLoadingP(p?: Promise<void>): void;
@@ -668,27 +708,27 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
668
708
  getRefNameMapForAdapter(adapterConf: {
669
709
  [x: string]: unknown;
670
710
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
671
- [x: string]: string | undefined;
711
+ [x: string]: string;
672
712
  }>;
673
713
  getReverseRefNameMapForAdapter(adapterConf: {
674
714
  [x: string]: unknown;
675
715
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
676
- [x: string]: string | undefined;
716
+ [x: string]: string;
677
717
  }>;
678
718
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
679
719
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
680
720
  }, {
681
721
  error: unknown;
682
- loaded: boolean;
683
722
  loadingP: Promise<void> | undefined;
684
723
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
685
724
  refNameAliases: {
686
- [x: string]: string | undefined;
687
- } | undefined;
688
- lowerCaseRefNameAliases: {
689
- [x: string]: string | undefined;
725
+ [x: string]: string;
690
726
  } | undefined;
691
727
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
728
+ } & {
729
+ readonly lowerCaseRefNameAliases: {
730
+ [k: string]: string;
731
+ } | undefined;
692
732
  } & {
693
733
  getConf(arg: string): any;
694
734
  } & {
@@ -711,13 +751,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
711
751
  getRefNameColor(refName: string): string | undefined;
712
752
  isValidRefName(refName: string): boolean;
713
753
  } & {
714
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
754
+ setLoaded({ regions, refNameAliases, cytobands, }: {
755
+ regions: import("@jbrowse/core/util").Region[];
756
+ refNameAliases: {
757
+ [x: string]: string;
758
+ };
759
+ cytobands: import("@jbrowse/core/util").Feature[];
760
+ }): void;
715
761
  setError(e: unknown): void;
716
762
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
717
763
  setRefNameAliases(aliases: {
718
- [x: string]: string | undefined;
719
- }, lcAliases: {
720
- [x: string]: string | undefined;
764
+ [x: string]: string;
721
765
  }): void;
722
766
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
723
767
  setLoadingP(p?: Promise<void>): void;
@@ -730,29 +774,29 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
730
774
  getRefNameMapForAdapter(adapterConf: {
731
775
  [x: string]: unknown;
732
776
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
733
- [x: string]: string | undefined;
777
+ [x: string]: string;
734
778
  }>;
735
779
  getReverseRefNameMapForAdapter(adapterConf: {
736
780
  [x: string]: unknown;
737
781
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
738
- [x: string]: string | undefined;
782
+ [x: string]: string;
739
783
  }>;
740
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
784
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
741
785
  } & {
742
786
  get(asmName: string): ({
743
787
  configuration: any;
744
788
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
745
789
  error: unknown;
746
- loaded: boolean;
747
790
  loadingP: Promise<void> | undefined;
748
791
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
749
792
  refNameAliases: {
750
- [x: string]: string | undefined;
751
- } | undefined;
752
- lowerCaseRefNameAliases: {
753
- [x: string]: string | undefined;
793
+ [x: string]: string;
754
794
  } | undefined;
755
795
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
796
+ } & {
797
+ readonly lowerCaseRefNameAliases: {
798
+ [k: string]: string;
799
+ } | undefined;
756
800
  } & {
757
801
  getConf(arg: string): any;
758
802
  } & {
@@ -775,13 +819,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
775
819
  getRefNameColor(refName: string): string | undefined;
776
820
  isValidRefName(refName: string): boolean;
777
821
  } & {
778
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
822
+ setLoaded({ regions, refNameAliases, cytobands, }: {
823
+ regions: import("@jbrowse/core/util").Region[];
824
+ refNameAliases: {
825
+ [x: string]: string;
826
+ };
827
+ cytobands: import("@jbrowse/core/util").Feature[];
828
+ }): void;
779
829
  setError(e: unknown): void;
780
830
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
781
831
  setRefNameAliases(aliases: {
782
- [x: string]: string | undefined;
783
- }, lcAliases: {
784
- [x: string]: string | undefined;
832
+ [x: string]: string;
785
833
  }): void;
786
834
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
787
835
  setLoadingP(p?: Promise<void>): void;
@@ -794,27 +842,27 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
794
842
  getRefNameMapForAdapter(adapterConf: {
795
843
  [x: string]: unknown;
796
844
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
797
- [x: string]: string | undefined;
845
+ [x: string]: string;
798
846
  }>;
799
847
  getReverseRefNameMapForAdapter(adapterConf: {
800
848
  [x: string]: unknown;
801
849
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
802
- [x: string]: string | undefined;
850
+ [x: string]: string;
803
851
  }>;
804
852
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
805
853
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
806
854
  }, {
807
855
  error: unknown;
808
- loaded: boolean;
809
856
  loadingP: Promise<void> | undefined;
810
857
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
811
858
  refNameAliases: {
812
- [x: string]: string | undefined;
813
- } | undefined;
814
- lowerCaseRefNameAliases: {
815
- [x: string]: string | undefined;
859
+ [x: string]: string;
816
860
  } | undefined;
817
861
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
862
+ } & {
863
+ readonly lowerCaseRefNameAliases: {
864
+ [k: string]: string;
865
+ } | undefined;
818
866
  } & {
819
867
  getConf(arg: string): any;
820
868
  } & {
@@ -837,13 +885,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
837
885
  getRefNameColor(refName: string): string | undefined;
838
886
  isValidRefName(refName: string): boolean;
839
887
  } & {
840
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
888
+ setLoaded({ regions, refNameAliases, cytobands, }: {
889
+ regions: import("@jbrowse/core/util").Region[];
890
+ refNameAliases: {
891
+ [x: string]: string;
892
+ };
893
+ cytobands: import("@jbrowse/core/util").Feature[];
894
+ }): void;
841
895
  setError(e: unknown): void;
842
896
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
843
897
  setRefNameAliases(aliases: {
844
- [x: string]: string | undefined;
845
- }, lcAliases: {
846
- [x: string]: string | undefined;
898
+ [x: string]: string;
847
899
  }): void;
848
900
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
849
901
  setLoadingP(p?: Promise<void>): void;
@@ -856,12 +908,12 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
856
908
  getRefNameMapForAdapter(adapterConf: {
857
909
  [x: string]: unknown;
858
910
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
859
- [x: string]: string | undefined;
911
+ [x: string]: string;
860
912
  }>;
861
913
  getReverseRefNameMapForAdapter(adapterConf: {
862
914
  [x: string]: unknown;
863
915
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
864
- [x: string]: string | undefined;
916
+ [x: string]: string;
865
917
  }>;
866
918
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
867
919
  readonly assemblyNamesList: any[];
@@ -872,16 +924,16 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
872
924
  configuration: any;
873
925
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
874
926
  error: unknown;
875
- loaded: boolean;
876
927
  loadingP: Promise<void> | undefined;
877
928
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
878
929
  refNameAliases: {
879
- [x: string]: string | undefined;
880
- } | undefined;
881
- lowerCaseRefNameAliases: {
882
- [x: string]: string | undefined;
930
+ [x: string]: string;
883
931
  } | undefined;
884
932
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
933
+ } & {
934
+ readonly lowerCaseRefNameAliases: {
935
+ [k: string]: string;
936
+ } | undefined;
885
937
  } & {
886
938
  getConf(arg: string): any;
887
939
  } & {
@@ -904,13 +956,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
904
956
  getRefNameColor(refName: string): string | undefined;
905
957
  isValidRefName(refName: string): boolean;
906
958
  } & {
907
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
959
+ setLoaded({ regions, refNameAliases, cytobands, }: {
960
+ regions: import("@jbrowse/core/util").Region[];
961
+ refNameAliases: {
962
+ [x: string]: string;
963
+ };
964
+ cytobands: import("@jbrowse/core/util").Feature[];
965
+ }): void;
908
966
  setError(e: unknown): void;
909
967
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
910
968
  setRefNameAliases(aliases: {
911
- [x: string]: string | undefined;
912
- }, lcAliases: {
913
- [x: string]: string | undefined;
969
+ [x: string]: string;
914
970
  }): void;
915
971
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
916
972
  setLoadingP(p?: Promise<void>): void;
@@ -923,27 +979,27 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
923
979
  getRefNameMapForAdapter(adapterConf: {
924
980
  [x: string]: unknown;
925
981
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
926
- [x: string]: string | undefined;
982
+ [x: string]: string;
927
983
  }>;
928
984
  getReverseRefNameMapForAdapter(adapterConf: {
929
985
  [x: string]: unknown;
930
986
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
931
- [x: string]: string | undefined;
987
+ [x: string]: string;
932
988
  }>;
933
989
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
934
990
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
935
991
  }, {
936
992
  error: unknown;
937
- loaded: boolean;
938
993
  loadingP: Promise<void> | undefined;
939
994
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
940
995
  refNameAliases: {
941
- [x: string]: string | undefined;
942
- } | undefined;
943
- lowerCaseRefNameAliases: {
944
- [x: string]: string | undefined;
996
+ [x: string]: string;
945
997
  } | undefined;
946
998
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
999
+ } & {
1000
+ readonly lowerCaseRefNameAliases: {
1001
+ [k: string]: string;
1002
+ } | undefined;
947
1003
  } & {
948
1004
  getConf(arg: string): any;
949
1005
  } & {
@@ -966,13 +1022,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
966
1022
  getRefNameColor(refName: string): string | undefined;
967
1023
  isValidRefName(refName: string): boolean;
968
1024
  } & {
969
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1025
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1026
+ regions: import("@jbrowse/core/util").Region[];
1027
+ refNameAliases: {
1028
+ [x: string]: string;
1029
+ };
1030
+ cytobands: import("@jbrowse/core/util").Feature[];
1031
+ }): void;
970
1032
  setError(e: unknown): void;
971
1033
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
972
1034
  setRefNameAliases(aliases: {
973
- [x: string]: string | undefined;
974
- }, lcAliases: {
975
- [x: string]: string | undefined;
1035
+ [x: string]: string;
976
1036
  }): void;
977
1037
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
978
1038
  setLoadingP(p?: Promise<void>): void;
@@ -985,12 +1045,12 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
985
1045
  getRefNameMapForAdapter(adapterConf: {
986
1046
  [x: string]: unknown;
987
1047
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
988
- [x: string]: string | undefined;
1048
+ [x: string]: string;
989
1049
  }>;
990
1050
  getReverseRefNameMapForAdapter(adapterConf: {
991
1051
  [x: string]: unknown;
992
1052
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
993
- [x: string]: string | undefined;
1053
+ [x: string]: string;
994
1054
  }>;
995
1055
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
996
1056
  getRefNameMapForAdapter(adapterConf: {
@@ -999,7 +1059,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
999
1059
  signal?: AbortSignal;
1000
1060
  sessionId: string;
1001
1061
  }): Promise<{
1002
- [x: string]: string | undefined;
1062
+ [x: string]: string;
1003
1063
  } | undefined>;
1004
1064
  getReverseRefNameMapForAdapter(adapterConf: {
1005
1065
  [x: string]: unknown;
@@ -1007,7 +1067,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1007
1067
  signal?: AbortSignal;
1008
1068
  sessionId: string;
1009
1069
  }): Promise<{
1010
- [x: string]: string | undefined;
1070
+ [x: string]: string;
1011
1071
  } | undefined>;
1012
1072
  isValidRefName(refName: string, assemblyName: string): boolean;
1013
1073
  } & {
@@ -1037,16 +1097,16 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1037
1097
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1038
1098
  }, {
1039
1099
  error: unknown;
1040
- loaded: boolean;
1041
1100
  loadingP: Promise<void> | undefined;
1042
1101
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1043
1102
  refNameAliases: {
1044
- [x: string]: string | undefined;
1045
- } | undefined;
1046
- lowerCaseRefNameAliases: {
1047
- [x: string]: string | undefined;
1103
+ [x: string]: string;
1048
1104
  } | undefined;
1049
1105
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1106
+ } & {
1107
+ readonly lowerCaseRefNameAliases: {
1108
+ [k: string]: string;
1109
+ } | undefined;
1050
1110
  } & {
1051
1111
  getConf(arg: string): any;
1052
1112
  } & {
@@ -1069,13 +1129,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1069
1129
  getRefNameColor(refName: string): string | undefined;
1070
1130
  isValidRefName(refName: string): boolean;
1071
1131
  } & {
1072
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1132
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1133
+ regions: import("@jbrowse/core/util").Region[];
1134
+ refNameAliases: {
1135
+ [x: string]: string;
1136
+ };
1137
+ cytobands: import("@jbrowse/core/util").Feature[];
1138
+ }): void;
1073
1139
  setError(e: unknown): void;
1074
1140
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1075
1141
  setRefNameAliases(aliases: {
1076
- [x: string]: string | undefined;
1077
- }, lcAliases: {
1078
- [x: string]: string | undefined;
1142
+ [x: string]: string;
1079
1143
  }): void;
1080
1144
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1081
1145
  setLoadingP(p?: Promise<void>): void;
@@ -1088,29 +1152,29 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1088
1152
  getRefNameMapForAdapter(adapterConf: {
1089
1153
  [x: string]: unknown;
1090
1154
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1091
- [x: string]: string | undefined;
1155
+ [x: string]: string;
1092
1156
  }>;
1093
1157
  getReverseRefNameMapForAdapter(adapterConf: {
1094
1158
  [x: string]: unknown;
1095
1159
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1096
- [x: string]: string | undefined;
1160
+ [x: string]: string;
1097
1161
  }>;
1098
1162
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1099
1163
  }, {
1100
- readonly assemblyNameMap: Record<string, ({
1164
+ readonly assemblyNameMap: Record<string, {
1101
1165
  configuration: any;
1102
1166
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1103
1167
  error: unknown;
1104
- loaded: boolean;
1105
1168
  loadingP: Promise<void> | undefined;
1106
1169
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1107
1170
  refNameAliases: {
1108
- [x: string]: string | undefined;
1109
- } | undefined;
1110
- lowerCaseRefNameAliases: {
1111
- [x: string]: string | undefined;
1171
+ [x: string]: string;
1112
1172
  } | undefined;
1113
1173
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1174
+ } & {
1175
+ readonly lowerCaseRefNameAliases: {
1176
+ [k: string]: string;
1177
+ } | undefined;
1114
1178
  } & {
1115
1179
  getConf(arg: string): any;
1116
1180
  } & {
@@ -1133,13 +1197,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1133
1197
  getRefNameColor(refName: string): string | undefined;
1134
1198
  isValidRefName(refName: string): boolean;
1135
1199
  } & {
1136
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1200
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1201
+ regions: import("@jbrowse/core/util").Region[];
1202
+ refNameAliases: {
1203
+ [x: string]: string;
1204
+ };
1205
+ cytobands: import("@jbrowse/core/util").Feature[];
1206
+ }): void;
1137
1207
  setError(e: unknown): void;
1138
1208
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1139
1209
  setRefNameAliases(aliases: {
1140
- [x: string]: string | undefined;
1141
- }, lcAliases: {
1142
- [x: string]: string | undefined;
1210
+ [x: string]: string;
1143
1211
  }): void;
1144
1212
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1145
1213
  setLoadingP(p?: Promise<void>): void;
@@ -1152,27 +1220,27 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1152
1220
  getRefNameMapForAdapter(adapterConf: {
1153
1221
  [x: string]: unknown;
1154
1222
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1155
- [x: string]: string | undefined;
1223
+ [x: string]: string;
1156
1224
  }>;
1157
1225
  getReverseRefNameMapForAdapter(adapterConf: {
1158
1226
  [x: string]: unknown;
1159
1227
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1160
- [x: string]: string | undefined;
1228
+ [x: string]: string;
1161
1229
  }>;
1162
1230
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1163
1231
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1164
1232
  }, {
1165
1233
  error: unknown;
1166
- loaded: boolean;
1167
1234
  loadingP: Promise<void> | undefined;
1168
1235
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1169
1236
  refNameAliases: {
1170
- [x: string]: string | undefined;
1171
- } | undefined;
1172
- lowerCaseRefNameAliases: {
1173
- [x: string]: string | undefined;
1237
+ [x: string]: string;
1174
1238
  } | undefined;
1175
1239
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1240
+ } & {
1241
+ readonly lowerCaseRefNameAliases: {
1242
+ [k: string]: string;
1243
+ } | undefined;
1176
1244
  } & {
1177
1245
  getConf(arg: string): any;
1178
1246
  } & {
@@ -1195,13 +1263,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1195
1263
  getRefNameColor(refName: string): string | undefined;
1196
1264
  isValidRefName(refName: string): boolean;
1197
1265
  } & {
1198
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1266
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1267
+ regions: import("@jbrowse/core/util").Region[];
1268
+ refNameAliases: {
1269
+ [x: string]: string;
1270
+ };
1271
+ cytobands: import("@jbrowse/core/util").Feature[];
1272
+ }): void;
1199
1273
  setError(e: unknown): void;
1200
1274
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1201
1275
  setRefNameAliases(aliases: {
1202
- [x: string]: string | undefined;
1203
- }, lcAliases: {
1204
- [x: string]: string | undefined;
1276
+ [x: string]: string;
1205
1277
  }): void;
1206
1278
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1207
1279
  setLoadingP(p?: Promise<void>): void;
@@ -1214,29 +1286,29 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1214
1286
  getRefNameMapForAdapter(adapterConf: {
1215
1287
  [x: string]: unknown;
1216
1288
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1217
- [x: string]: string | undefined;
1289
+ [x: string]: string;
1218
1290
  }>;
1219
1291
  getReverseRefNameMapForAdapter(adapterConf: {
1220
1292
  [x: string]: unknown;
1221
1293
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1222
- [x: string]: string | undefined;
1294
+ [x: string]: string;
1223
1295
  }>;
1224
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1296
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
1225
1297
  } & {
1226
1298
  get(asmName: string): ({
1227
1299
  configuration: any;
1228
1300
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1229
1301
  error: unknown;
1230
- loaded: boolean;
1231
1302
  loadingP: Promise<void> | undefined;
1232
1303
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1233
1304
  refNameAliases: {
1234
- [x: string]: string | undefined;
1235
- } | undefined;
1236
- lowerCaseRefNameAliases: {
1237
- [x: string]: string | undefined;
1305
+ [x: string]: string;
1238
1306
  } | undefined;
1239
1307
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1308
+ } & {
1309
+ readonly lowerCaseRefNameAliases: {
1310
+ [k: string]: string;
1311
+ } | undefined;
1240
1312
  } & {
1241
1313
  getConf(arg: string): any;
1242
1314
  } & {
@@ -1259,13 +1331,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1259
1331
  getRefNameColor(refName: string): string | undefined;
1260
1332
  isValidRefName(refName: string): boolean;
1261
1333
  } & {
1262
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1334
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1335
+ regions: import("@jbrowse/core/util").Region[];
1336
+ refNameAliases: {
1337
+ [x: string]: string;
1338
+ };
1339
+ cytobands: import("@jbrowse/core/util").Feature[];
1340
+ }): void;
1263
1341
  setError(e: unknown): void;
1264
1342
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1265
1343
  setRefNameAliases(aliases: {
1266
- [x: string]: string | undefined;
1267
- }, lcAliases: {
1268
- [x: string]: string | undefined;
1344
+ [x: string]: string;
1269
1345
  }): void;
1270
1346
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1271
1347
  setLoadingP(p?: Promise<void>): void;
@@ -1278,27 +1354,27 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1278
1354
  getRefNameMapForAdapter(adapterConf: {
1279
1355
  [x: string]: unknown;
1280
1356
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1281
- [x: string]: string | undefined;
1357
+ [x: string]: string;
1282
1358
  }>;
1283
1359
  getReverseRefNameMapForAdapter(adapterConf: {
1284
1360
  [x: string]: unknown;
1285
1361
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1286
- [x: string]: string | undefined;
1362
+ [x: string]: string;
1287
1363
  }>;
1288
1364
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1289
1365
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1290
1366
  }, {
1291
1367
  error: unknown;
1292
- loaded: boolean;
1293
1368
  loadingP: Promise<void> | undefined;
1294
1369
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1295
1370
  refNameAliases: {
1296
- [x: string]: string | undefined;
1297
- } | undefined;
1298
- lowerCaseRefNameAliases: {
1299
- [x: string]: string | undefined;
1371
+ [x: string]: string;
1300
1372
  } | undefined;
1301
1373
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1374
+ } & {
1375
+ readonly lowerCaseRefNameAliases: {
1376
+ [k: string]: string;
1377
+ } | undefined;
1302
1378
  } & {
1303
1379
  getConf(arg: string): any;
1304
1380
  } & {
@@ -1321,13 +1397,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1321
1397
  getRefNameColor(refName: string): string | undefined;
1322
1398
  isValidRefName(refName: string): boolean;
1323
1399
  } & {
1324
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1400
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1401
+ regions: import("@jbrowse/core/util").Region[];
1402
+ refNameAliases: {
1403
+ [x: string]: string;
1404
+ };
1405
+ cytobands: import("@jbrowse/core/util").Feature[];
1406
+ }): void;
1325
1407
  setError(e: unknown): void;
1326
1408
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1327
1409
  setRefNameAliases(aliases: {
1328
- [x: string]: string | undefined;
1329
- }, lcAliases: {
1330
- [x: string]: string | undefined;
1410
+ [x: string]: string;
1331
1411
  }): void;
1332
1412
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1333
1413
  setLoadingP(p?: Promise<void>): void;
@@ -1340,12 +1420,12 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1340
1420
  getRefNameMapForAdapter(adapterConf: {
1341
1421
  [x: string]: unknown;
1342
1422
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1343
- [x: string]: string | undefined;
1423
+ [x: string]: string;
1344
1424
  }>;
1345
1425
  getReverseRefNameMapForAdapter(adapterConf: {
1346
1426
  [x: string]: unknown;
1347
1427
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1348
- [x: string]: string | undefined;
1428
+ [x: string]: string;
1349
1429
  }>;
1350
1430
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
1351
1431
  readonly assemblyNamesList: any[];
@@ -1356,16 +1436,16 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1356
1436
  configuration: any;
1357
1437
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
1358
1438
  error: unknown;
1359
- loaded: boolean;
1360
1439
  loadingP: Promise<void> | undefined;
1361
1440
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1362
1441
  refNameAliases: {
1363
- [x: string]: string | undefined;
1364
- } | undefined;
1365
- lowerCaseRefNameAliases: {
1366
- [x: string]: string | undefined;
1442
+ [x: string]: string;
1367
1443
  } | undefined;
1368
1444
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1445
+ } & {
1446
+ readonly lowerCaseRefNameAliases: {
1447
+ [k: string]: string;
1448
+ } | undefined;
1369
1449
  } & {
1370
1450
  getConf(arg: string): any;
1371
1451
  } & {
@@ -1388,13 +1468,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1388
1468
  getRefNameColor(refName: string): string | undefined;
1389
1469
  isValidRefName(refName: string): boolean;
1390
1470
  } & {
1391
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1471
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1472
+ regions: import("@jbrowse/core/util").Region[];
1473
+ refNameAliases: {
1474
+ [x: string]: string;
1475
+ };
1476
+ cytobands: import("@jbrowse/core/util").Feature[];
1477
+ }): void;
1392
1478
  setError(e: unknown): void;
1393
1479
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1394
1480
  setRefNameAliases(aliases: {
1395
- [x: string]: string | undefined;
1396
- }, lcAliases: {
1397
- [x: string]: string | undefined;
1481
+ [x: string]: string;
1398
1482
  }): void;
1399
1483
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1400
1484
  setLoadingP(p?: Promise<void>): void;
@@ -1407,27 +1491,27 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1407
1491
  getRefNameMapForAdapter(adapterConf: {
1408
1492
  [x: string]: unknown;
1409
1493
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1410
- [x: string]: string | undefined;
1494
+ [x: string]: string;
1411
1495
  }>;
1412
1496
  getReverseRefNameMapForAdapter(adapterConf: {
1413
1497
  [x: string]: unknown;
1414
1498
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1415
- [x: string]: string | undefined;
1499
+ [x: string]: string;
1416
1500
  }>;
1417
1501
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
1418
1502
  configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
1419
1503
  }, {
1420
1504
  error: unknown;
1421
- loaded: boolean;
1422
1505
  loadingP: Promise<void> | undefined;
1423
1506
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
1424
1507
  refNameAliases: {
1425
- [x: string]: string | undefined;
1426
- } | undefined;
1427
- lowerCaseRefNameAliases: {
1428
- [x: string]: string | undefined;
1508
+ [x: string]: string;
1429
1509
  } | undefined;
1430
1510
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
1511
+ } & {
1512
+ readonly lowerCaseRefNameAliases: {
1513
+ [k: string]: string;
1514
+ } | undefined;
1431
1515
  } & {
1432
1516
  getConf(arg: string): any;
1433
1517
  } & {
@@ -1450,13 +1534,17 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1450
1534
  getRefNameColor(refName: string): string | undefined;
1451
1535
  isValidRefName(refName: string): boolean;
1452
1536
  } & {
1453
- setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
1537
+ setLoaded({ regions, refNameAliases, cytobands, }: {
1538
+ regions: import("@jbrowse/core/util").Region[];
1539
+ refNameAliases: {
1540
+ [x: string]: string;
1541
+ };
1542
+ cytobands: import("@jbrowse/core/util").Feature[];
1543
+ }): void;
1454
1544
  setError(e: unknown): void;
1455
1545
  setRegions(regions: import("@jbrowse/core/util").Region[]): void;
1456
1546
  setRefNameAliases(aliases: {
1457
- [x: string]: string | undefined;
1458
- }, lcAliases: {
1459
- [x: string]: string | undefined;
1547
+ [x: string]: string;
1460
1548
  }): void;
1461
1549
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
1462
1550
  setLoadingP(p?: Promise<void>): void;
@@ -1469,12 +1557,12 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1469
1557
  getRefNameMapForAdapter(adapterConf: {
1470
1558
  [x: string]: unknown;
1471
1559
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1472
- [x: string]: string | undefined;
1560
+ [x: string]: string;
1473
1561
  }>;
1474
1562
  getReverseRefNameMapForAdapter(adapterConf: {
1475
1563
  [x: string]: unknown;
1476
1564
  }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
1477
- [x: string]: string | undefined;
1565
+ [x: string]: string;
1478
1566
  }>;
1479
1567
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
1480
1568
  getRefNameMapForAdapter(adapterConf: {
@@ -1483,7 +1571,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1483
1571
  signal?: AbortSignal;
1484
1572
  sessionId: string;
1485
1573
  }): Promise<{
1486
- [x: string]: string | undefined;
1574
+ [x: string]: string;
1487
1575
  } | undefined>;
1488
1576
  getReverseRefNameMapForAdapter(adapterConf: {
1489
1577
  [x: string]: unknown;
@@ -1491,7 +1579,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1491
1579
  signal?: AbortSignal;
1492
1580
  sessionId: string;
1493
1581
  }): Promise<{
1494
- [x: string]: string | undefined;
1582
+ [x: string]: string;
1495
1583
  } | undefined>;
1496
1584
  isValidRefName(refName: string, assemblyName: string): boolean;
1497
1585
  } & {
@@ -1571,7 +1659,7 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
1571
1659
  } & {
1572
1660
  getReferring(object: IAnyStateTreeNode): import("./ReferenceManagement").ReferringNode[];
1573
1661
  } & {
1574
- removeReferring(referring: import("./ReferenceManagement").ReferringNode[], track: import("@jbrowse/core/pluggableElementTypes").BaseTrackConfig, callbacks: Function[], dereferenceTypeCount: Record<string, number>): void;
1662
+ removeReferring(referring: import("./ReferenceManagement").ReferringNode[], track: import("@jbrowse/core/pluggableElementTypes").BaseTrackConfig, callbacks: ((arg: string) => void)[], dereferenceTypeCount: Record<string, number>): void;
1575
1663
  } & {
1576
1664
  /**
1577
1665
  * #getter