@jbrowse/product-core 2.13.0 → 2.14.0

package/dist/Session/Tracks.js

@@ -37,7 +37,9 @@ function TracksManagerSessionMixin(pluginManager) {
             const dereferenceTypeCount = {};
             const referring = self.getReferring(trackConf);
             self.removeReferring(referring, trackConf, callbacksToDereferenceTrack, dereferenceTypeCount);
-            callbacksToDereferenceTrack.forEach(cb => cb());
+            callbacksToDereferenceTrack.forEach(cb => {
+                cb();
+            });
             if (self.adminMode) {
                 return self.jbrowse.deleteTrackConf(trackConf);
             }

package/dist/ui/AboutDialogContents.js

@@ -76,17 +76,23 @@ const AboutDialogContents = (0, mobx_react_1.observer)(function ({ config, }) {
     return (react_1.default.createElement("div", { className: classes.content },
         react_1.default.createElement(BaseFeatureDetail_1.BaseCard, { title: "Configuration" },
             !hideUris ? (react_1.default.createElement("span", { className: classes.button },
-                react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => setShowRefNames(true) }, "Show ref names"),
+                react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
+                        setShowRefNames(true);
+                    } }, "Show ref names"),
                 react_1.default.createElement(material_1.Button, { variant: "contained", onClick: () => {
                         const snap = removeAttr((0, clone_1.default)(conf), 'baseUri');
                         (0, copy_to_clipboard_1.default)(JSON.stringify(snap, null, 2));
                         setCopied(true);
-                        setTimeout(() => setCopied(false), 1000);
+                        setTimeout(() => {
+                            setCopied(false);
+                        }, 1000);
                     } }, copied ? 'Copied to clipboard!' : 'Copy config'))) : null,
             react_1.default.createElement(BaseFeatureDetail_1.Attributes, { attributes: confPostExt, omit: ['displays', 'baseUri', 'refNames', 'formatAbout'], hideUris: hideUris })),
         ExtraPanel ? (react_1.default.createElement(BaseFeatureDetail_1.BaseCard, { title: ExtraPanel.name },
             react_1.default.createElement(ExtraPanel.Component, { config: config }))) : null,
         react_1.default.createElement(FileInfoPanel_1.default, { config: config }),
-        showRefNames ? (react_1.default.createElement(RefNameInfoDialog_1.default, { config: config, onClose: () => setShowRefNames(false) })) : null));
+        showRefNames ? (react_1.default.createElement(RefNameInfoDialog_1.default, { config: config, onClose: () => {
+                setShowRefNames(false);
+            } })) : null));
 });
 exports.default = AboutDialogContents;

package/dist/ui/FileInfoPanel.d.ts

@@ -2,4 +2,4 @@ import React from 'react';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 export default function FileInfoPanel({ config, }: {
     config: AnyConfigurationModel;
-}): React.JSX.Element | null;
+}): React.JSX.Element;

package/dist/ui/FileInfoPanel.js

@@ -58,5 +58,5 @@ function FileInfoPanel({ config, }) {
                 .replaceAll('>', '&gt;')}</pre>`,
         }
         : info || {};
-    return info !== null ? (react_1.default.createElement(BaseFeatureDetail_1.BaseCard, { title: "File info" }, error ? (react_1.default.createElement(ui_1.ErrorMessage, { error: error })) : info === undefined ? (react_1.default.createElement(ui_1.LoadingEllipses, { message: "Loading file data" })) : (react_1.default.createElement(BaseFeatureDetail_1.Attributes, { attributes: details })))) : null;
+    return (react_1.default.createElement(BaseFeatureDetail_1.BaseCard, { title: "File info" }, error ? (react_1.default.createElement(ui_1.ErrorMessage, { error: error })) : info === undefined ? (react_1.default.createElement(ui_1.LoadingEllipses, { message: "Loading file data" })) : (react_1.default.createElement(BaseFeatureDetail_1.Attributes, { attributes: details }))));
 }

package/dist/ui/RefNameInfoDialog.js

@@ -85,9 +85,9 @@ const RefNameInfoDialog = (0, mobx_react_1.observer)(function ({ config, onClose
         return [
             `--- ${assemblyName} ---`,
             ...refNames.slice(0, MAX_REF_NAMES),
-            `${refNames.length > MAX_REF_NAMES
+            refNames.length > MAX_REF_NAMES
                 ? `\nToo many refNames to show in browser for ${assemblyName}, use "Copy ref names" button to copy to clipboard`
-                : ''}`,
+                : '',
         ];
     })
         .filter(f => !!f)
@@ -103,7 +103,9 @@ const RefNameInfoDialog = (0, mobx_react_1.observer)(function ({ config, onClose
                         .filter(f => !!f)
                         .join('\n'));
                     setCopied(true);
-                    setTimeout(() => setCopied(false), 1000);
+                    setTimeout(() => {
+                        setCopied(false);
+                    }, 1000);
                 } }, copied ? 'Copied to clipboard!' : 'Copy ref names'),
             react_1.default.createElement("pre", { className: classes.refNames }, result))))));
 });

package/esm/RootModel/BaseRootModel.d.ts

@@ -38,16 +38,16 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
         }, {
             error: unknown;
-            loaded: boolean;
             loadingP: Promise<void> | undefined;
             volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
             refNameAliases: {
-                [x: string]: string | undefined;
-            } | undefined;
-            lowerCaseRefNameAliases: {
-                [x: string]: string | undefined;
+                [x: string]: string;
             } | undefined;
             cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+        } & {
+            readonly lowerCaseRefNameAliases: {
+                [k: string]: string;
+            } | undefined;
         } & {
             getConf(arg: string): any;
         } & {
@@ -70,15 +70,17 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             getRefNameColor(refName: string): string | undefined;
             isValidRefName(refName: string): boolean;
         } & {
-            setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+            setLoaded({ regions, refNameAliases, cytobands, }: {
+                regions: import("@jbrowse/core/util").Region[];
+                refNameAliases: {
+                    [x: string]: string;
+                };
+                cytobands: import("@jbrowse/core/util").Feature[];
+            }): void;
             setError(e: unknown): void;
-            setRegions(regions: import("@jbrowse/core/util" /**
-             * #action
-             */).Region[]): void;
+            setRegions(regions: import("@jbrowse/core/util").Region[]): void;
             setRefNameAliases(aliases: {
-                [x: string]: string | undefined;
-            }, lcAliases: {
-                [x: string]: string | undefined;
+                [x: string]: string;
             }): void;
             setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
             setLoadingP(p?: Promise<void>): void;
@@ -91,29 +93,29 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
+                [x: string]: string;
             }>;
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
+                [x: string]: string;
             }>;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }, {
-        readonly assemblyNameMap: Record<string, ({
+        readonly assemblyNameMap: Record<string, {
             configuration: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             error: unknown;
-            loaded: boolean;
             loadingP: Promise<void> | undefined;
             volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
             refNameAliases: {
-                [x: string]: string | undefined;
-            } | undefined;
-            lowerCaseRefNameAliases: {
-                [x: string]: string | undefined;
+                [x: string]: string;
             } | undefined;
             cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+        } & {
+            readonly lowerCaseRefNameAliases: {
+                [k: string]: string;
+            } | undefined;
         } & {
             getConf(arg: string): any;
         } & {
@@ -136,13 +138,17 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             getRefNameColor(refName: string): string | undefined;
             isValidRefName(refName: string): boolean;
         } & {
-            setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+            setLoaded({ regions, refNameAliases, cytobands, }: {
+                regions: import("@jbrowse/core/util").Region[];
+                refNameAliases: {
+                    [x: string]: string;
+                };
+                cytobands: import("@jbrowse/core/util").Feature[];
+            }): void;
             setError(e: unknown): void;
             setRegions(regions: import("@jbrowse/core/util").Region[]): void;
             setRefNameAliases(aliases: {
-                [x: string]: string | undefined;
-            }, lcAliases: {
-                [x: string]: string | undefined;
+                [x: string]: string;
             }): void;
             setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
             setLoadingP(p?: Promise<void>): void;
@@ -155,27 +161,27 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
+                [x: string]: string;
             }>;
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
+                [x: string]: string;
             }>;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
         }, {
             error: unknown;
-            loaded: boolean;
             loadingP: Promise<void> | undefined;
             volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
             refNameAliases: {
-                [x: string]: string | undefined;
-            } | undefined;
-            lowerCaseRefNameAliases: {
-                [x: string]: string | undefined;
+                [x: string]: string;
             } | undefined;
             cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+        } & {
+            readonly lowerCaseRefNameAliases: {
+                [k: string]: string;
+            } | undefined;
         } & {
             getConf(arg: string): any;
         } & {
@@ -198,13 +204,17 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             getRefNameColor(refName: string): string | undefined;
             isValidRefName(refName: string): boolean;
         } & {
-            setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+            setLoaded({ regions, refNameAliases, cytobands, }: {
+                regions: import("@jbrowse/core/util").Region[];
+                refNameAliases: {
+                    [x: string]: string;
+                };
+                cytobands: import("@jbrowse/core/util").Feature[];
+            }): void;
             setError(e: unknown): void;
             setRegions(regions: import("@jbrowse/core/util").Region[]): void;
             setRefNameAliases(aliases: {
-                [x: string]: string | undefined;
-            }, lcAliases: {
-                [x: string]: string | undefined;
+                [x: string]: string;
             }): void;
             setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
             setLoadingP(p?: Promise<void>): void;
@@ -217,29 +227,29 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
+                [x: string]: string;
             }>;
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
+                [x: string]: string;
             }>;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
     } & {
         get(asmName: string): ({
             configuration: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             error: unknown;
-            loaded: boolean;
             loadingP: Promise<void> | undefined;
             volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
             refNameAliases: {
-                [x: string]: string | undefined;
-            } | undefined;
-            lowerCaseRefNameAliases: {
-                [x: string]: string | undefined;
+                [x: string]: string;
             } | undefined;
             cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+        } & {
+            readonly lowerCaseRefNameAliases: {
+                [k: string]: string;
+            } | undefined;
         } & {
             getConf(arg: string): any;
         } & {
@@ -262,13 +272,17 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             getRefNameColor(refName: string): string | undefined;
             isValidRefName(refName: string): boolean;
         } & {
-            setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+            setLoaded({ regions, refNameAliases, cytobands, }: {
+                regions: import("@jbrowse/core/util").Region[];
+                refNameAliases: {
+                    [x: string]: string;
+                };
+                cytobands: import("@jbrowse/core/util").Feature[];
+            }): void;
             setError(e: unknown): void;
             setRegions(regions: import("@jbrowse/core/util").Region[]): void;
             setRefNameAliases(aliases: {
-                [x: string]: string | undefined;
-            }, lcAliases: {
-                [x: string]: string | undefined;
+                [x: string]: string;
             }): void;
             setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
             setLoadingP(p?: Promise<void>): void;
@@ -281,27 +295,27 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
+                [x: string]: string;
             }>;
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
+                [x: string]: string;
             }>;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
         }, {
             error: unknown;
-            loaded: boolean;
             loadingP: Promise<void> | undefined;
             volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
             refNameAliases: {
-                [x: string]: string | undefined;
-            } | undefined;
-            lowerCaseRefNameAliases: {
-                [x: string]: string | undefined;
+                [x: string]: string;
             } | undefined;
             cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+        } & {
+            readonly lowerCaseRefNameAliases: {
+                [k: string]: string;
+            } | undefined;
         } & {
             getConf(arg: string): any;
         } & {
@@ -324,13 +338,17 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             getRefNameColor(refName: string): string | undefined;
             isValidRefName(refName: string): boolean;
         } & {
-            setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+            setLoaded({ regions, refNameAliases, cytobands, }: {
+                regions: import("@jbrowse/core/util").Region[];
+                refNameAliases: {
+                    [x: string]: string;
+                };
+                cytobands: import("@jbrowse/core/util").Feature[];
+            }): void;
             setError(e: unknown): void;
             setRegions(regions: import("@jbrowse/core/util").Region[]): void;
             setRefNameAliases(aliases: {
-                [x: string]: string | undefined;
-            }, lcAliases: {
-                [x: string]: string | undefined;
+                [x: string]: string;
             }): void;
             setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
             setLoadingP(p?: Promise<void>): void;
@@ -343,12 +361,12 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
+                [x: string]: string;
             }>;
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
+                [x: string]: string;
             }>;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
         readonly assemblyNamesList: any[];
@@ -359,16 +377,16 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             configuration: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             error: unknown;
-            loaded: boolean;
             loadingP: Promise<void> | undefined;
             volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
             refNameAliases: {
-                [x: string]: string | undefined;
-            } | undefined;
-            lowerCaseRefNameAliases: {
-                [x: string]: string | undefined;
+                [x: string]: string;
             } | undefined;
             cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+        } & {
+            readonly lowerCaseRefNameAliases: {
+                [k: string]: string;
+            } | undefined;
         } & {
             getConf(arg: string): any;
         } & {
@@ -391,13 +409,17 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             getRefNameColor(refName: string): string | undefined;
             isValidRefName(refName: string): boolean;
         } & {
-            setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+            setLoaded({ regions, refNameAliases, cytobands, }: {
+                regions: import("@jbrowse/core/util").Region[];
+                refNameAliases: {
+                    [x: string]: string;
+                };
+                cytobands: import("@jbrowse/core/util").Feature[];
+            }): void;
             setError(e: unknown): void;
             setRegions(regions: import("@jbrowse/core/util").Region[]): void;
             setRefNameAliases(aliases: {
-                [x: string]: string | undefined;
-            }, lcAliases: {
-                [x: string]: string | undefined;
+                [x: string]: string;
             }): void;
             setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
             setLoadingP(p?: Promise<void>): void;
@@ -410,27 +432,27 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
+                [x: string]: string;
             }>;
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
+                [x: string]: string;
             }>;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<IAnyType>>;
         }, {
             error: unknown;
-            loaded: boolean;
             loadingP: Promise<void> | undefined;
             volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
             refNameAliases: {
-                [x: string]: string | undefined;
-            } | undefined;
-            lowerCaseRefNameAliases: {
-                [x: string]: string | undefined;
+                [x: string]: string;
             } | undefined;
             cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+        } & {
+            readonly lowerCaseRefNameAliases: {
+                [k: string]: string;
+            } | undefined;
         } & {
             getConf(arg: string): any;
         } & {
@@ -453,13 +475,17 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             getRefNameColor(refName: string): string | undefined;
             isValidRefName(refName: string): boolean;
         } & {
-            setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
+            setLoaded({ regions, refNameAliases, cytobands, }: {
+                regions: import("@jbrowse/core/util").Region[];
+                refNameAliases: {
+                    [x: string]: string;
+                };
+                cytobands: import("@jbrowse/core/util").Feature[];
+            }): void;
             setError(e: unknown): void;
             setRegions(regions: import("@jbrowse/core/util").Region[]): void;
             setRefNameAliases(aliases: {
-                [x: string]: string | undefined;
-            }, lcAliases: {
-                [x: string]: string | undefined;
+                [x: string]: string;
             }): void;
             setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
             setLoadingP(p?: Promise<void>): void;
@@ -472,12 +498,12 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             getRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
+                [x: string]: string;
             }>;
             getReverseRefNameMapForAdapter(adapterConf: {
                 [x: string]: unknown;
             }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                [x: string]: string | undefined;
+                [x: string]: string;
             }>;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined>;
         getRefNameMapForAdapter(adapterConf: {
@@ -486,7 +512,7 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             signal?: AbortSignal;
             sessionId: string;
         }): Promise<{
-            [x: string]: string | undefined;
+            [x: string]: string;
         } | undefined>;
         getReverseRefNameMapForAdapter(adapterConf: {
             [x: string]: unknown;
@@ -494,7 +520,7 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             signal?: AbortSignal;
             sessionId: string;
         }): Promise<{
-            [x: string]: string | undefined;
+            [x: string]: string;
         } | undefined>;
         isValidRefName(refName: string, assemblyName: string): boolean;
     } & {

package/esm/RootModel/InternetAccounts.d.ts

@@ -19,7 +19,7 @@ export declare function InternetAccountsRootModelMixin(pluginManager: PluginMana
     /**
      * #action
      */
-    createEphemeralInternetAccount(internetAccountId: string, initialSnapshot: {} | undefined, url: string): any;
+    createEphemeralInternetAccount(internetAccountId: string, initialSnapshot: Record<string, unknown>, url: string): any;
     /**
      * #action
      */

package/esm/RootModel/InternetAccounts.js

@@ -31,7 +31,7 @@ export function InternetAccountsRootModelMixin(pluginManager) {
         /**
          * #action
          */
-        createEphemeralInternetAccount(internetAccountId, initialSnapshot = {}, url) {
+        createEphemeralInternetAccount(internetAccountId, initialSnapshot, url) {
             let hostUri;
             try {
                 hostUri = new URL(url).origin;
@@ -39,7 +39,6 @@ export function InternetAccountsRootModelMixin(pluginManager) {
             catch (e) {
                 // ignore
             }
-            // id of a custom new internaccount is `${type}-${name}`
             const internetAccountSplit = internetAccountId.split('-');
             const configuration = {
                 type: internetAccountSplit[0],

package/esm/Session/BaseSession.d.ts

@@ -82,8 +82,12 @@ export declare function BaseSessionModel<ROOT_MODEL_TYPE extends BaseRootModelTy
         refNameAliases: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
             adapter: import("mobx-state-tree").IAnyModelType;
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-        cytobands: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-            adapter: import("mobx-state-tree").IAnyModelType;
+        cytobands: import("@jbrowse/core/configuration/configurationSchema" /**
+         * #getter
+         */).ConfigurationSchemaType<{
+            adapter: import("mobx-state-tree" /**
+             * #getter
+             */).IAnyModelType;
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
         displayName: {
             type: string;