@jbrowse/product-core 2.10.1 → 2.10.3

package/dist/RootModel/BaseRootModel.d.ts

@@ -56,14 +56,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
             readonly aliases: string[];
             readonly displayName: string | undefined;
-            hasName(name: string): boolean; /**
-             * #action
-             */
+            hasName(name: string): boolean;
             readonly allAliases: string[];
             readonly allRefNames: string[] | undefined;
-            readonly lowerCaseRefNames: string[] | undefined; /**
-             * #action
-             */
+            readonly lowerCaseRefNames: string[] | undefined;
             readonly allRefNamesWithLowerCase: string[] | undefined;
             readonly rpcManager: RpcManager;
             readonly refNameColors: string[];
@@ -529,7 +525,9 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             readonly displayName: string | undefined;
             hasName(name: string): boolean;
             readonly allAliases: string[];
-            readonly allRefNames: string[] | undefined;
+            readonly allRefNames: string[] | undefined; /**
+             * #action
+             */
             readonly lowerCaseRefNames: string[] | undefined;
             readonly allRefNamesWithLowerCase: string[] | undefined;
             readonly rpcManager: RpcManager;
@@ -542,7 +540,6 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             isValidRefName(refName: string): boolean;
         } & {
             setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-            /** Type guard for checking if something is a JB root model */
             setError(e: unknown): void;
             setRegions(regions: import("@jbrowse/core/util").Region[]): void;
             setRefNameAliases(aliases: {
@@ -592,7 +589,9 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             readonly displayName: string | undefined;
             hasName(name: string): boolean;
             readonly allAliases: string[];
-            readonly allRefNames: string[] | undefined;
+            readonly allRefNames: string[] | undefined; /**
+             * #action
+             */
             readonly lowerCaseRefNames: string[] | undefined;
             readonly allRefNamesWithLowerCase: string[] | undefined;
             readonly rpcManager: RpcManager;
@@ -605,7 +604,6 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             isValidRefName(refName: string): boolean;
         } & {
             setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-            /** Type guard for checking if something is a JB root model */
             setError(e: unknown): void;
             setRegions(regions: import("@jbrowse/core/util").Region[]): void;
             setRefNameAliases(aliases: {
@@ -638,7 +636,6 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
 }, {
     rpcManager: RpcManager;
     adminMode: boolean;
-    isAssemblyEditing: boolean;
     error: unknown;
     textSearchManager: TextSearchManager;
     pluginManager: PluginManager;
@@ -663,10 +660,6 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
      * #action
      */
     renameCurrentSession(newName: string): void;
-    /**
-     * #action
-     */
-    setAssemblyEditing(flag: boolean): void;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export type BaseRootModelType = ReturnType<typeof BaseRootModelFactory>;
 export type BaseRootModel = Instance<BaseRootModelType>;

package/dist/RootModel/BaseRootModel.js

@@ -42,7 +42,6 @@ function BaseRootModelFactory({ pluginManager, jbrowseModelType, sessionModelTyp
             MainThreadRpcDriver: {},
         }),
         adminMode: false,
-        isAssemblyEditing: false,
         error: undefined,
         textSearchManager: new TextSearchManager_1.default(pluginManager),
         pluginManager,
@@ -82,12 +81,6 @@ function BaseRootModelFactory({ pluginManager, jbrowseModelType, sessionModelTyp
                 this.setSession(snapshot);
             }
         },
-        /**
-         * #action
-         */
-        setAssemblyEditing(flag) {
-            self.isAssemblyEditing = flag;
-        },
     }));
 }
 exports.BaseRootModelFactory = BaseRootModelFactory;

package/dist/Session/MultipleViews.d.ts

@@ -1300,7 +1300,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
         rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         adminMode: boolean;
-        isAssemblyEditing: boolean;
         error: unknown;
         textSearchManager: import("@jbrowse/core/util").TextSearchManager;
         pluginManager: PluginManager;
@@ -1310,7 +1309,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
         setDefaultSession(): void;
         setSessionPath(path: string): void;
         renameCurrentSession(newName: string): void;
-        setAssemblyEditing(flag: boolean): void;
     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
         jbrowse: import("mobx-state-tree").IAnyType;
         session: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
@@ -1918,7 +1916,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
     }, {
         rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         adminMode: boolean;
-        isAssemblyEditing: boolean;
         error: unknown;
         textSearchManager: import("@jbrowse/core/util").TextSearchManager;
         pluginManager: PluginManager;
@@ -1928,7 +1925,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
         setDefaultSession(): void;
         setSessionPath(path: string): void;
         renameCurrentSession(newName: string): void;
-        setAssemblyEditing(flag: boolean): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
 } & {
     readonly jbrowse: any;

package/dist/Session/SessionTracks.d.ts

@@ -554,7 +554,9 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
             removeAssembly(asm: {
                 configuration: any;
             } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                error: unknown;
+                error: unknown; /**
+                 * #action
+                 */
                 loaded: boolean;
                 loadingP: Promise<void> | undefined;
                 volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
@@ -614,11 +616,11 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
                     [x: string]: string | undefined;
                 }>;
             } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>; /**
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown; /**
                  * #action
                  */
-            }, {
-                error: unknown;
                 loaded: boolean;
                 loadingP: Promise<void> | undefined;
                 volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
@@ -1151,7 +1153,9 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
             removeAssembly(asm: {
                 configuration: any;
             } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                error: unknown;
+                error: unknown; /**
+                 * #action
+                 */
                 loaded: boolean;
                 loadingP: Promise<void> | undefined;
                 volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
@@ -1211,11 +1215,11 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
                     [x: string]: string | undefined;
                 }>;
             } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>; /**
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown; /**
                  * #action
                  */
-            }, {
-                error: unknown;
                 loaded: boolean;
                 loadingP: Promise<void> | undefined;
                 volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
@@ -1281,7 +1285,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
         rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         adminMode: boolean;
-        isAssemblyEditing: boolean;
         error: unknown;
         textSearchManager: import("@jbrowse/core/util").TextSearchManager;
         pluginManager: PluginManager;
@@ -1291,7 +1294,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
         setDefaultSession(): void;
         setSessionPath(path: string): void;
         renameCurrentSession(newName: string): void;
-        setAssemblyEditing(flag: boolean): void;
     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
         jbrowse: import("mobx-state-tree").IAnyType;
         session: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
@@ -1767,7 +1769,9 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
             removeAssembly(asm: {
                 configuration: any;
             } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                error: unknown;
+                error: unknown; /**
+                 * #action
+                 */
                 loaded: boolean;
                 loadingP: Promise<void> | undefined;
                 volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
@@ -1827,11 +1831,11 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
                     [x: string]: string | undefined;
                 }>;
             } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>; /**
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown; /**
                  * #action
                  */
-            }, {
-                error: unknown;
                 loaded: boolean;
                 loadingP: Promise<void> | undefined;
                 volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
@@ -1897,7 +1901,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
     }, {
         rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         adminMode: boolean;
-        isAssemblyEditing: boolean;
         error: unknown;
         textSearchManager: import("@jbrowse/core/util").TextSearchManager;
         pluginManager: PluginManager;
@@ -1907,7 +1910,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
         setDefaultSession(): void;
         setSessionPath(path: string): void;
         renameCurrentSession(newName: string): void;
-        setAssemblyEditing(flag: boolean): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
 } & {
     readonly jbrowse: any;
@@ -2009,6 +2011,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
             };
             subfeatures: {
                 type: string;
+                /** Session mixin MST type for a session that has `sessionTracks` */
                 description: string;
                 defaultValue: {};
                 contextVariable: string[];
@@ -2044,9 +2047,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
         setSubschema(slotName: string, data: unknown): any;
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
 } & {
-    addTrackConf(trackConf: AnyConfiguration): any; /**
-     * #action
-     */
+    addTrackConf(trackConf: AnyConfiguration): any;
     deleteTrackConf(trackConf: {
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {

package/dist/Session/SessionTracks.js

@@ -22,7 +22,7 @@ function SessionTracksManagerSessionMixin(pluginManager) {
          * #getter
          */
         get tracks() {
-            return self.jbrowse.tracks;
+            return [...self.sessionTracks, ...self.jbrowse.tracks];
         },
     }))
         .actions(self => {

package/dist/Session/Tracks.d.ts

@@ -1293,18 +1293,15 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
         rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         adminMode: boolean;
-        isAssemblyEditing: boolean;
         error: unknown;
         textSearchManager: import("@jbrowse/core/util").TextSearchManager;
         pluginManager: PluginManager;
     } & {
-        /** Type guard for SessionWithTracks */
         setError(error: unknown): void;
         setSession(sessionSnapshot?: any): void;
         setDefaultSession(): void;
         setSessionPath(path: string): void;
         renameCurrentSession(newName: string): void;
-        setAssemblyEditing(flag: boolean): void;
     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
         jbrowse: import("mobx-state-tree").IAnyType;
         session: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
@@ -1916,18 +1913,15 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
     }, {
         rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         adminMode: boolean;
-        isAssemblyEditing: boolean;
         error: unknown;
         textSearchManager: import("@jbrowse/core/util").TextSearchManager;
         pluginManager: PluginManager;
     } & {
-        /** Type guard for SessionWithTracks */
         setError(error: unknown): void;
         setSession(sessionSnapshot?: any): void;
         setDefaultSession(): void;
         setSessionPath(path: string): void;
         renameCurrentSession(newName: string): void;
-        setAssemblyEditing(flag: boolean): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
 } & {
     readonly jbrowse: any;

package/dist/rpcWorker.js

@@ -58,7 +58,7 @@ async function initializeWorker(corePlugins, opts) {
         self.rpcServer = new librpc_web_mod_1.default.Server({
             ...rpcConfig,
             ...(0, remoteAbortSignals_1.remoteAbortRpcHandler)(),
-            ping: () => {
+            ping: async () => {
                 // the ping method is required by the worker driver for checking the
                 // health of the worker
             },

package/dist/ui/FileInfoPanel.js

@@ -22,47 +22,33 @@ var __importStar = (this && this.__importStar) || function (mod) {
     __setModuleDefault(result, mod);
     return result;
 };
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
-const material_1 = require("@mui/material");
 const configuration_1 = require("@jbrowse/core/configuration");
-const LoadingEllipses_1 = __importDefault(require("@jbrowse/core/ui/LoadingEllipses"));
 const util_1 = require("@jbrowse/core/util");
 const BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
+const ui_1 = require("@jbrowse/core/ui");
 function FileInfoPanel({ config, }) {
     const [error, setError] = (0, react_1.useState)();
     const [info, setInfo] = (0, react_1.useState)();
     const session = (0, util_1.getSession)(config);
     const { rpcManager } = session;
     (0, react_1.useEffect)(() => {
-        const aborter = new AbortController();
-        const { signal } = aborter;
-        let cancelled = false;
+        // eslint-disable-next-line @typescript-eslint/no-floating-promises
+        ;
         (async () => {
             try {
                 const adapterConfig = (0, configuration_1.readConfObject)(config, 'adapter');
                 const result = await rpcManager.call(config.trackId, 'CoreGetInfo', {
                     adapterConfig,
-                    signal,
                 });
-                if (!cancelled) {
-                    setInfo(result);
-                }
+                setInfo(result);
             }
             catch (e) {
-                if (!cancelled) {
-                    console.error(e);
-                    setError(e);
-                }
+                console.error(e);
+                setError(e);
             }
         })();
-        return () => {
-            aborter.abort();
-            cancelled = true;
-        };
     }, [config, rpcManager]);
     const details = typeof info === 'string'
         ? {
@@ -71,6 +57,6 @@ function FileInfoPanel({ config, }) {
                 .replaceAll('>', '&gt;')}</pre>`,
         }
         : info || {};
-    return info !== null ? (react_1.default.createElement(BaseFeatureDetail_1.BaseCard, { title: "File info" }, error ? (react_1.default.createElement(material_1.Typography, { color: "error" }, `${error}`)) : info === undefined ? (react_1.default.createElement(LoadingEllipses_1.default, { message: "Loading file data" })) : (react_1.default.createElement(BaseFeatureDetail_1.Attributes, { attributes: details })))) : null;
+    return info !== null ? (react_1.default.createElement(BaseFeatureDetail_1.BaseCard, { title: "File info" }, error ? (react_1.default.createElement(ui_1.ErrorMessage, { error: error })) : info === undefined ? (react_1.default.createElement(ui_1.LoadingEllipses, { message: "Loading file data" })) : (react_1.default.createElement(BaseFeatureDetail_1.Attributes, { attributes: details })))) : null;
 }
 exports.default = FileInfoPanel;

package/esm/RootModel/BaseRootModel.d.ts

@@ -56,14 +56,10 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
             readonly aliases: string[];
             readonly displayName: string | undefined;
-            hasName(name: string): boolean; /**
-             * #action
-             */
+            hasName(name: string): boolean;
             readonly allAliases: string[];
             readonly allRefNames: string[] | undefined;
-            readonly lowerCaseRefNames: string[] | undefined; /**
-             * #action
-             */
+            readonly lowerCaseRefNames: string[] | undefined;
             readonly allRefNamesWithLowerCase: string[] | undefined;
             readonly rpcManager: RpcManager;
             readonly refNameColors: string[];
@@ -529,7 +525,9 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             readonly displayName: string | undefined;
             hasName(name: string): boolean;
             readonly allAliases: string[];
-            readonly allRefNames: string[] | undefined;
+            readonly allRefNames: string[] | undefined; /**
+             * #action
+             */
             readonly lowerCaseRefNames: string[] | undefined;
             readonly allRefNamesWithLowerCase: string[] | undefined;
             readonly rpcManager: RpcManager;
@@ -542,7 +540,6 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             isValidRefName(refName: string): boolean;
         } & {
             setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-            /** Type guard for checking if something is a JB root model */
             setError(e: unknown): void;
             setRegions(regions: import("@jbrowse/core/util").Region[]): void;
             setRefNameAliases(aliases: {
@@ -592,7 +589,9 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             readonly displayName: string | undefined;
             hasName(name: string): boolean;
             readonly allAliases: string[];
-            readonly allRefNames: string[] | undefined;
+            readonly allRefNames: string[] | undefined; /**
+             * #action
+             */
             readonly lowerCaseRefNames: string[] | undefined;
             readonly allRefNamesWithLowerCase: string[] | undefined;
             readonly rpcManager: RpcManager;
@@ -605,7 +604,6 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
             isValidRefName(refName: string): boolean;
         } & {
             setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-            /** Type guard for checking if something is a JB root model */
             setError(e: unknown): void;
             setRegions(regions: import("@jbrowse/core/util").Region[]): void;
             setRefNameAliases(aliases: {
@@ -638,7 +636,6 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
 }, {
     rpcManager: RpcManager;
     adminMode: boolean;
-    isAssemblyEditing: boolean;
     error: unknown;
     textSearchManager: TextSearchManager;
     pluginManager: PluginManager;
@@ -663,10 +660,6 @@ export declare function BaseRootModelFactory({ pluginManager, jbrowseModelType,
      * #action
      */
     renameCurrentSession(newName: string): void;
-    /**
-     * #action
-     */
-    setAssemblyEditing(flag: boolean): void;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export type BaseRootModelType = ReturnType<typeof BaseRootModelFactory>;
 export type BaseRootModel = Instance<BaseRootModelType>;

package/esm/RootModel/BaseRootModel.js

@@ -36,7 +36,6 @@ export function BaseRootModelFactory({ pluginManager, jbrowseModelType, sessionM
             MainThreadRpcDriver: {},
         }),
         adminMode: false,
-        isAssemblyEditing: false,
         error: undefined,
         textSearchManager: new TextSearchManager(pluginManager),
         pluginManager,
@@ -76,12 +75,6 @@ export function BaseRootModelFactory({ pluginManager, jbrowseModelType, sessionM
                 this.setSession(snapshot);
             }
         },
-        /**
-         * #action
-         */
-        setAssemblyEditing(flag) {
-            self.isAssemblyEditing = flag;
-        },
     }));
 }
 /** Type guard for checking if something is a JB root model */

package/esm/Session/MultipleViews.d.ts

@@ -1300,7 +1300,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
         rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         adminMode: boolean;
-        isAssemblyEditing: boolean;
         error: unknown;
         textSearchManager: import("@jbrowse/core/util").TextSearchManager;
         pluginManager: PluginManager;
@@ -1310,7 +1309,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
         setDefaultSession(): void;
         setSessionPath(path: string): void;
         renameCurrentSession(newName: string): void;
-        setAssemblyEditing(flag: boolean): void;
     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
         jbrowse: import("mobx-state-tree").IAnyType;
         session: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
@@ -1918,7 +1916,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
     }, {
         rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         adminMode: boolean;
-        isAssemblyEditing: boolean;
         error: unknown;
         textSearchManager: import("@jbrowse/core/util").TextSearchManager;
         pluginManager: PluginManager;
@@ -1928,7 +1925,6 @@ export declare function MultipleViewsSessionMixin(pluginManager: PluginManager):
         setDefaultSession(): void;
         setSessionPath(path: string): void;
         renameCurrentSession(newName: string): void;
-        setAssemblyEditing(flag: boolean): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
 } & {
     readonly jbrowse: any;

package/esm/Session/SessionTracks.d.ts

@@ -554,7 +554,9 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
             removeAssembly(asm: {
                 configuration: any;
             } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                error: unknown;
+                error: unknown; /**
+                 * #action
+                 */
                 loaded: boolean;
                 loadingP: Promise<void> | undefined;
                 volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
@@ -614,11 +616,11 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
                     [x: string]: string | undefined;
                 }>;
             } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>; /**
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown; /**
                  * #action
                  */
-            }, {
-                error: unknown;
                 loaded: boolean;
                 loadingP: Promise<void> | undefined;
                 volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
@@ -1151,7 +1153,9 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
             removeAssembly(asm: {
                 configuration: any;
             } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                error: unknown;
+                error: unknown; /**
+                 * #action
+                 */
                 loaded: boolean;
                 loadingP: Promise<void> | undefined;
                 volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
@@ -1211,11 +1215,11 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
                     [x: string]: string | undefined;
                 }>;
             } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>; /**
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown; /**
                  * #action
                  */
-            }, {
-                error: unknown;
                 loaded: boolean;
                 loadingP: Promise<void> | undefined;
                 volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
@@ -1281,7 +1285,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
         rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         adminMode: boolean;
-        isAssemblyEditing: boolean;
         error: unknown;
         textSearchManager: import("@jbrowse/core/util").TextSearchManager;
         pluginManager: PluginManager;
@@ -1291,7 +1294,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
         setDefaultSession(): void;
         setSessionPath(path: string): void;
         renameCurrentSession(newName: string): void;
-        setAssemblyEditing(flag: boolean): void;
     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
         jbrowse: import("mobx-state-tree").IAnyType;
         session: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
@@ -1767,7 +1769,9 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
             removeAssembly(asm: {
                 configuration: any;
             } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                error: unknown;
+                error: unknown; /**
+                 * #action
+                 */
                 loaded: boolean;
                 loadingP: Promise<void> | undefined;
                 volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
@@ -1827,11 +1831,11 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
                     [x: string]: string | undefined;
                 }>;
             } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>; /**
+                configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+            }, {
+                error: unknown; /**
                  * #action
                  */
-            }, {
-                error: unknown;
                 loaded: boolean;
                 loadingP: Promise<void> | undefined;
                 volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
@@ -1897,7 +1901,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
     }, {
         rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         adminMode: boolean;
-        isAssemblyEditing: boolean;
         error: unknown;
         textSearchManager: import("@jbrowse/core/util").TextSearchManager;
         pluginManager: PluginManager;
@@ -1907,7 +1910,6 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
         setDefaultSession(): void;
         setSessionPath(path: string): void;
         renameCurrentSession(newName: string): void;
-        setAssemblyEditing(flag: boolean): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
 } & {
     readonly jbrowse: any;
@@ -2009,6 +2011,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
             };
             subfeatures: {
                 type: string;
+                /** Session mixin MST type for a session that has `sessionTracks` */
                 description: string;
                 defaultValue: {};
                 contextVariable: string[];
@@ -2044,9 +2047,7 @@ export declare function SessionTracksManagerSessionMixin(pluginManager: PluginMa
         setSubschema(slotName: string, data: unknown): any;
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
 } & {
-    addTrackConf(trackConf: AnyConfiguration): any; /**
-     * #action
-     */
+    addTrackConf(trackConf: AnyConfiguration): any;
     deleteTrackConf(trackConf: {
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {

package/esm/Session/SessionTracks.js

@@ -19,7 +19,7 @@ export function SessionTracksManagerSessionMixin(pluginManager) {
          * #getter
          */
         get tracks() {
-            return self.jbrowse.tracks;
+            return [...self.sessionTracks, ...self.jbrowse.tracks];
         },
     }))
         .actions(self => {

package/esm/Session/Tracks.d.ts

@@ -1293,18 +1293,15 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
         rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         adminMode: boolean;
-        isAssemblyEditing: boolean;
         error: unknown;
         textSearchManager: import("@jbrowse/core/util").TextSearchManager;
         pluginManager: PluginManager;
     } & {
-        /** Type guard for SessionWithTracks */
         setError(error: unknown): void;
         setSession(sessionSnapshot?: any): void;
         setDefaultSession(): void;
         setSessionPath(path: string): void;
         renameCurrentSession(newName: string): void;
-        setAssemblyEditing(flag: boolean): void;
     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
         jbrowse: import("mobx-state-tree").IAnyType;
         session: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IAnyType>;
@@ -1916,18 +1913,15 @@ export declare function TracksManagerSessionMixin(pluginManager: PluginManager):
     }, {
         rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
         adminMode: boolean;
-        isAssemblyEditing: boolean;
         error: unknown;
         textSearchManager: import("@jbrowse/core/util").TextSearchManager;
         pluginManager: PluginManager;
     } & {
-        /** Type guard for SessionWithTracks */
         setError(error: unknown): void;
         setSession(sessionSnapshot?: any): void;
         setDefaultSession(): void;
         setSessionPath(path: string): void;
         renameCurrentSession(newName: string): void;
-        setAssemblyEditing(flag: boolean): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
 } & {
     readonly jbrowse: any;

package/esm/rpcWorker.js

@@ -52,7 +52,7 @@ export async function initializeWorker(corePlugins, opts) {
         self.rpcServer = new RpcServer.Server({
             ...rpcConfig,
             ...remoteAbortRpcHandler(),
-            ping: () => {
+            ping: async () => {
                 // the ping method is required by the worker driver for checking the
                 // health of the worker
             },

package/esm/ui/FileInfoPanel.js

@@ -1,40 +1,29 @@
 import React, { useState, useEffect } from 'react';
-import { Typography } from '@mui/material';
 import { readConfObject, } from '@jbrowse/core/configuration';
-import LoadingEllipses from '@jbrowse/core/ui/LoadingEllipses';
 import { getSession } from '@jbrowse/core/util';
 import { BaseCard, Attributes, } from '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail';
+import { ErrorMessage, LoadingEllipses } from '@jbrowse/core/ui';
 export default function FileInfoPanel({ config, }) {
     const [error, setError] = useState();
     const [info, setInfo] = useState();
     const session = getSession(config);
     const { rpcManager } = session;
     useEffect(() => {
-        const aborter = new AbortController();
-        const { signal } = aborter;
-        let cancelled = false;
+        // eslint-disable-next-line @typescript-eslint/no-floating-promises
+        ;
         (async () => {
             try {
                 const adapterConfig = readConfObject(config, 'adapter');
                 const result = await rpcManager.call(config.trackId, 'CoreGetInfo', {
                     adapterConfig,
-                    signal,
                 });
-                if (!cancelled) {
-                    setInfo(result);
-                }
+                setInfo(result);
             }
             catch (e) {
-                if (!cancelled) {
-                    console.error(e);
-                    setError(e);
-                }
+                console.error(e);
+                setError(e);
             }
         })();
-        return () => {
-            aborter.abort();
-            cancelled = true;
-        };
     }, [config, rpcManager]);
     const details = typeof info === 'string'
         ? {
@@ -43,5 +32,5 @@ export default function FileInfoPanel({ config, }) {
                 .replaceAll('>', '&gt;')}</pre>`,
         }
         : info || {};
-    return info !== null ? (React.createElement(BaseCard, { title: "File info" }, error ? (React.createElement(Typography, { color: "error" }, `${error}`)) : info === undefined ? (React.createElement(LoadingEllipses, { message: "Loading file data" })) : (React.createElement(Attributes, { attributes: details })))) : null;
+    return info !== null ? (React.createElement(BaseCard, { title: "File info" }, error ? (React.createElement(ErrorMessage, { error: error })) : info === undefined ? (React.createElement(LoadingEllipses, { message: "Loading file data" })) : (React.createElement(Attributes, { attributes: details })))) : null;
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/product-core",
-  "version": "2.10.1",
+  "version": "2.10.3",
   "sideEffects": false,
   "description": "JBrowse 2 code shared between products but not used by plugins",
   "keywords": [
@@ -43,7 +43,7 @@
   },
   "dependencies": {
     "@babel/runtime": "^7.16.3",
-    "@jbrowse/core": "^2.10.1",
+    "@jbrowse/core": "^2.10.3",
     "@mui/icons-material": "^5.0.0",
     "@mui/material": "^5.10.17",
     "copy-to-clipboard": "^3.3.1",
@@ -63,5 +63,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "442b5f87efddfdf4ccf520b4d9dd01ddd370cb07"
+  "gitHead": "c8fc800cd17decd72b2e971c7a6add3b95214e72"
 }