@jbrowse/plugin-wiggle 4.1.13 → 4.1.15

package/esm/DensityRenderer/configSchema.d.ts

@@ -24,7 +24,7 @@ declare const configSchema: import("@jbrowse/core/configuration/configurationSch
     };
     bicolorPivot: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"none" | "numeric" | "mean" | "z_score">;
         description: string;
         defaultValue: string;
     };

package/esm/LinePlotRenderer/configSchema.d.ts

@@ -30,7 +30,7 @@ declare const configSchema: import("@jbrowse/core/configuration/configurationSch
     };
     bicolorPivot: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"none" | "numeric" | "mean" | "z_score">;
         description: string;
         defaultValue: string;
     };

package/esm/LinearWiggleDisplay/configSchema.d.ts

@@ -2,7 +2,7 @@ import type PluginManager from '@jbrowse/core/PluginManager';
 export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     defaultRendering: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"line" | "density" | "xyplot">;
         defaultValue: string;
     };
     renderers: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
@@ -14,7 +14,7 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
     autoscale: {
         type: string;
         defaultValue: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"local" | "global" | "globalsd" | "localsd" | "zscore">;
         description: string;
     };
     minimalTicks: {
@@ -39,7 +39,7 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
     };
     scaleType: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"log" | "linear">;
         description: string;
         defaultValue: string;
     };

package/esm/LinearWiggleDisplay/model.d.ts

@@ -1105,6 +1105,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         onMouseMove(_: unknown, featureId?: string): void;
         onMouseLeave(_: unknown): void;
         onContextMenu(_: unknown): void;
+        onFeatureClick(_: unknown, featureId?: string): void;
     };
     renderProps(): any;
 } & {
@@ -1155,7 +1156,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
 } & {
     readonly adapterCapabilities: string[];
     readonly rendererConfig: {
-        scaleType: string;
+        scaleType: any;
         filled: any;
         displayCrossHatches: any;
         summaryScoreMode: any;
@@ -1225,8 +1226,8 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     readonly ticks: {
         range: number[];
         values: number[];
-        format: (d: import("d3-scale").NumberValue) => string;
-        position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+        format: (d: import("@mui/x-charts-vendor/d3-scale").NumberValue) => string;
+        position: import("@mui/x-charts-vendor/d3-scale").ScaleLinear<number, number, never> | import("@mui/x-charts-vendor/d3-scale").ScaleQuantize<number, never>;
     } | undefined;
 } & {
     renderProps(): any;

package/esm/MultiDensityRenderer/configSchema.d.ts

@@ -24,7 +24,7 @@ declare const configSchema: import("@jbrowse/core/configuration/configurationSch
     };
     bicolorPivot: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"none" | "numeric" | "mean" | "z_score">;
         description: string;
         defaultValue: string;
     };

package/esm/MultiLineRenderer/configSchema.d.ts

@@ -6,7 +6,7 @@ declare const configSchema: import("@jbrowse/core/configuration/configurationSch
     };
     summaryScoreMode: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"max" | "min" | "whiskers" | "avg">;
         description: string;
         defaultValue: string;
     };
@@ -36,7 +36,7 @@ declare const configSchema: import("@jbrowse/core/configuration/configurationSch
     };
     bicolorPivot: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"none" | "numeric" | "mean" | "z_score">;
         description: string;
         defaultValue: string;
     };

package/esm/MultiLinearWiggleDisplay/configSchema.d.ts

@@ -2,7 +2,7 @@ import type PluginManager from '@jbrowse/core/PluginManager';
 export default function WiggleConfigFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
     defaultRendering: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"multiline" | "xyplot" | "multirowxy" | "multirowdensity" | "multirowline">;
         defaultValue: string;
     };
     renderers: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
@@ -20,7 +20,7 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
     autoscale: {
         type: string;
         defaultValue: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"local" | "global" | "globalsd" | "localsd" | "zscore">;
         description: string;
     };
     minimalTicks: {
@@ -45,7 +45,7 @@ export default function WiggleConfigFactory(pluginManager: PluginManager): impor
     };
     scaleType: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"log" | "linear">;
         description: string;
         defaultValue: string;
     };

package/esm/MultiLinearWiggleDisplay/model.d.ts

@@ -1113,6 +1113,7 @@ export declare function stateModelFactory(_pluginManager: PluginManager, configS
         onMouseMove(_: unknown, featureId?: string): void;
         onMouseLeave(_: unknown): void;
         onContextMenu(_: unknown): void;
+        onFeatureClick(_: unknown, featureId?: string): void;
     };
     renderProps(): any;
 } & {
@@ -1163,7 +1164,7 @@ export declare function stateModelFactory(_pluginManager: PluginManager, configS
 } & {
     readonly adapterCapabilities: string[];
     readonly rendererConfig: {
-        scaleType: string;
+        scaleType: any;
         filled: any;
         displayCrossHatches: any;
         summaryScoreMode: any;
@@ -1282,8 +1283,8 @@ export declare function stateModelFactory(_pluginManager: PluginManager, configS
     readonly ticks: {
         range: number[];
         values: number[];
-        format: (d: import("d3-scale").NumberValue) => string;
-        position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+        format: (d: import("@mui/x-charts-vendor/d3-scale").NumberValue) => string;
+        position: import("@mui/x-charts-vendor/d3-scale").ScaleLinear<number, number, never> | import("@mui/x-charts-vendor/d3-scale").ScaleQuantize<number, never>;
     } | undefined;
     readonly colors: string[];
     readonly quantitativeStatsRelevantToCurrentZoom: boolean;
@@ -2456,6 +2457,7 @@ export declare function stateModelFactory(_pluginManager: PluginManager, configS
                 onMouseMove(_: unknown, featureId?: string): void;
                 onMouseLeave(_: unknown): void;
                 onContextMenu(_: unknown): void;
+                onFeatureClick(_: unknown, featureId?: string): void;
             };
             renderProps(): any;
         } & {
@@ -2506,7 +2508,7 @@ export declare function stateModelFactory(_pluginManager: PluginManager, configS
         } & {
             readonly adapterCapabilities: string[];
             readonly rendererConfig: {
-                scaleType: string;
+                scaleType: any;
                 filled: any;
                 displayCrossHatches: any;
                 summaryScoreMode: any;
@@ -2625,8 +2627,8 @@ export declare function stateModelFactory(_pluginManager: PluginManager, configS
             readonly ticks: {
                 range: number[];
                 values: number[];
-                format: (d: import("d3-scale").NumberValue) => string;
-                position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+                format: (d: import("@mui/x-charts-vendor/d3-scale").NumberValue) => string;
+                position: import("@mui/x-charts-vendor/d3-scale").ScaleLinear<number, number, never> | import("@mui/x-charts-vendor/d3-scale").ScaleQuantize<number, never>;
             } | undefined;
             readonly colors: string[];
             readonly quantitativeStatsRelevantToCurrentZoom: boolean;
@@ -3737,6 +3739,7 @@ export declare function stateModelFactory(_pluginManager: PluginManager, configS
                 onMouseMove(_: unknown, featureId?: string): void;
                 onMouseLeave(_: unknown): void;
                 onContextMenu(_: unknown): void;
+                onFeatureClick(_: unknown, featureId?: string): void;
             };
             renderProps(): any;
         } & {
@@ -3787,7 +3790,7 @@ export declare function stateModelFactory(_pluginManager: PluginManager, configS
         } & {
             readonly adapterCapabilities: string[];
             readonly rendererConfig: {
-                scaleType: string;
+                scaleType: any;
                 filled: any;
                 displayCrossHatches: any;
                 summaryScoreMode: any;
@@ -3906,8 +3909,8 @@ export declare function stateModelFactory(_pluginManager: PluginManager, configS
             readonly ticks: {
                 range: number[];
                 values: number[];
-                format: (d: import("d3-scale").NumberValue) => string;
-                position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+                format: (d: import("@mui/x-charts-vendor/d3-scale").NumberValue) => string;
+                position: import("@mui/x-charts-vendor/d3-scale").ScaleLinear<number, number, never> | import("@mui/x-charts-vendor/d3-scale").ScaleQuantize<number, never>;
             } | undefined;
             readonly colors: string[];
             readonly quantitativeStatsRelevantToCurrentZoom: boolean;

package/esm/MultiRowLineRenderer/configSchema.d.ts

@@ -6,7 +6,7 @@ declare const configSchema: import("@jbrowse/core/configuration/configurationSch
     };
     summaryScoreMode: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"max" | "min" | "whiskers" | "avg">;
         description: string;
         defaultValue: string;
     };
@@ -36,7 +36,7 @@ declare const configSchema: import("@jbrowse/core/configuration/configurationSch
     };
     bicolorPivot: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"none" | "numeric" | "mean" | "z_score">;
         description: string;
         defaultValue: string;
     };

package/esm/MultiRowXYPlotRenderer/configSchema.d.ts

@@ -10,7 +10,7 @@ declare const configSchema: import("@jbrowse/core/configuration/configurationSch
     };
     summaryScoreMode: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"max" | "min" | "whiskers" | "avg">;
         description: string;
         defaultValue: string;
     };
@@ -44,7 +44,7 @@ declare const configSchema: import("@jbrowse/core/configuration/configurationSch
     };
     bicolorPivot: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"none" | "numeric" | "mean" | "z_score">;
         description: string;
         defaultValue: string;
     };

package/esm/MultiXYPlotRenderer/configSchema.d.ts

@@ -10,7 +10,7 @@ declare const configSchema: import("@jbrowse/core/configuration/configurationSch
     };
     summaryScoreMode: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"max" | "min" | "whiskers" | "avg">;
         description: string;
         defaultValue: string;
     };
@@ -44,7 +44,7 @@ declare const configSchema: import("@jbrowse/core/configuration/configurationSch
     };
     bicolorPivot: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"none" | "numeric" | "mean" | "z_score">;
         description: string;
         defaultValue: string;
     };

package/esm/WiggleRPC/MultiWiggleGetScoreMatrix.js

@@ -1,11 +1,13 @@
 import RpcMethodTypeWithFiltersAndRenameRegions from '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions';
+import { createStopTokenChecker } from '@jbrowse/core/util/stopToken';
 import { getScoreMatrix } from "./getScoreMatrix.js";
 export class MultiWiggleGetScoreMatrix extends RpcMethodTypeWithFiltersAndRenameRegions {
     name = 'MultiWiggleGetScoreMatrix';
     async execute(args, rpcDriverClassName) {
         const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
+        const stopTokenCheck = createStopTokenChecker(deserializedArgs.stopToken);
         return getScoreMatrix({
-            args: deserializedArgs,
+            args: { ...deserializedArgs, stopTokenCheck },
             pluginManager: this.pluginManager,
         });
     }

package/esm/WiggleRPC/executeClusterScoreMatrix.js

@@ -1,18 +1,23 @@
-import { clusterData, toNewick } from '@gmod/hclust';
+import { clusterObject, toNewick } from '@gmod/hclust';
+import { checkStopToken2, createStopTokenChecker, } from '@jbrowse/core/util/stopToken';
 import { getScoreMatrix } from "./getScoreMatrix.js";
 export async function executeClusterScoreMatrix({ pluginManager, args, }) {
+    const stopTokenCheck = createStopTokenChecker(args.stopToken);
     const matrix = await getScoreMatrix({
         pluginManager,
-        args,
+        args: {
+            ...args,
+            stopTokenCheck,
+        },
     });
-    const sampleLabels = Object.keys(matrix);
-    const result = await clusterData({
-        data: Object.values(matrix),
-        sampleLabels,
-        stopToken: args.stopToken,
+    const result = await clusterObject({
+        data: matrix,
         onProgress: a => {
             args.statusCallback?.(a);
         },
+        checkCancellation: () => {
+            checkStopToken2(stopTokenCheck);
+        },
     });
     return {
         order: result.order,

package/esm/WiggleRPC/getScoreMatrix.js

@@ -1,8 +1,9 @@
 import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
 import { groupBy } from '@jbrowse/core/util';
+import { checkStopToken2 } from '@jbrowse/core/util/stopToken';
 import { firstValueFrom, toArray } from 'rxjs';
 export async function getScoreMatrix({ pluginManager, args, }) {
-    const { sources, regions, adapterConfig, sessionId, bpPerPx } = args;
+    const { sources, regions, adapterConfig, sessionId, bpPerPx, stopTokenCheck, } = args;
     const adapter = await getAdapter(pluginManager, sessionId, adapterConfig);
     const dataAdapter = adapter.dataAdapter;
     const r0 = regions[0];
@@ -30,6 +31,7 @@ export async function getScoreMatrix({ pluginManager, args, }) {
             }
         }
         rows[name] = Array.from(arr);
+        checkStopToken2(stopTokenCheck);
     }
     return rows;
 }

package/esm/WiggleRPC/types.d.ts

@@ -1,9 +1,10 @@
 import type { Source } from '../util.ts';
 import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { Region } from '@jbrowse/core/util';
+import type { LastStopTokenCheck, Region } from '@jbrowse/core/util';
 export interface GetScoreMatrixArgs {
     adapterConfig: AnyConfigurationModel;
     stopToken?: string;
+    stopTokenCheck?: LastStopTokenCheck;
     sessionId: string;
     headers?: Record<string, string>;
     regions: Region[];

package/esm/XYPlotRenderer/configSchema.d.ts

@@ -10,7 +10,7 @@ declare const configSchema: import("@jbrowse/core/configuration/configurationSch
     };
     summaryScoreMode: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"max" | "min" | "whiskers" | "avg">;
         description: string;
         defaultValue: string;
     };
@@ -44,7 +44,7 @@ declare const configSchema: import("@jbrowse/core/configuration/configurationSch
     };
     bicolorPivot: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"none" | "numeric" | "mean" | "z_score">;
         description: string;
         defaultValue: string;
     };

package/esm/configSchema.d.ts

@@ -24,7 +24,7 @@ declare const WiggleRenderer: import("@jbrowse/core/configuration/configurationS
     };
     bicolorPivot: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"none" | "numeric" | "mean" | "z_score">;
         description: string;
         defaultValue: string;
     };

package/esm/index.d.ts

@@ -33,7 +33,7 @@ export default class WigglePlugin extends Plugin {
             };
             summaryScoreMode: {
                 type: string;
-                model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                model: import("@jbrowse/mobx-state-tree").ISimpleType<"max" | "min" | "whiskers" | "avg">;
                 description: string;
                 defaultValue: string;
             };
@@ -67,7 +67,7 @@ export default class WigglePlugin extends Plugin {
             };
             bicolorPivot: {
                 type: string;
-                model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+                model: import("@jbrowse/mobx-state-tree").ISimpleType<"none" | "numeric" | "mean" | "z_score">;
                 description: string;
                 defaultValue: string;
             };

package/esm/shared/SharedWiggleConfigSchema.d.ts

@@ -2,7 +2,7 @@ export default function sharedWiggleConfigFactory(): import("@jbrowse/core/confi
     autoscale: {
         type: string;
         defaultValue: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"local" | "global" | "globalsd" | "localsd" | "zscore">;
         description: string;
     };
     minimalTicks: {
@@ -27,7 +27,7 @@ export default function sharedWiggleConfigFactory(): import("@jbrowse/core/confi
     };
     scaleType: {
         type: string;
-        model: import("@jbrowse/mobx-state-tree").ISimpleType<string>;
+        model: import("@jbrowse/mobx-state-tree").ISimpleType<"log" | "linear">;
         description: string;
         defaultValue: string;
     };

package/esm/shared/SharedWiggleMixin.d.ts

@@ -1100,6 +1100,7 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
         onMouseMove(_: unknown, featureId?: string): void;
         onMouseLeave(_: unknown): void;
         onContextMenu(_: unknown): void;
+        onFeatureClick(_: unknown, featureId?: string): void;
     };
     renderProps(): any;
 } & {
@@ -1150,7 +1151,7 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
 } & {
     readonly adapterCapabilities: string[];
     readonly rendererConfig: {
-        scaleType: string;
+        scaleType: any;
         filled: any;
         displayCrossHatches: any;
         summaryScoreMode: any;

package/esm/shared/SharedWiggleMixin.js

@@ -1,5 +1,5 @@
 import { lazy } from 'react';
-import { ConfigurationReference, getConf, readConfObject, } from '@jbrowse/core/configuration';
+import { ConfigurationReference, getConf } from '@jbrowse/core/configuration';
 import { getEnv, getSession, isSelectionContainer } from '@jbrowse/core/util';
 import { stopStopToken } from '@jbrowse/core/util/stopToken';
 import { types } from '@jbrowse/mobx-state-tree';
@@ -144,17 +144,17 @@ export default function SharedWiggleMixin(configSchema) {
             return pluginManager.getAdapterType(type).adapterCapabilities;
         },
         get rendererConfig() {
-            const { color, displayCrossHatches, fill, minSize, negColor, posColor, summaryScoreMode, scaleType, rendererTypeName, } = self;
+            const { color, displayCrossHatches, fill, minSize, negColor, posColor, summaryScoreMode, scale, rendererTypeName, } = self;
             const conf = self.configuration.renderers?.[rendererTypeName];
             return {
-                scaleType: scaleType ?? readConfObject(conf, 'scaleType'),
-                filled: fill ?? readConfObject(conf, 'filled'),
-                displayCrossHatches: displayCrossHatches ?? readConfObject(conf, 'displayCrossHatches'),
-                summaryScoreMode: summaryScoreMode ?? readConfObject(conf, 'summaryScoreMode'),
-                color: color ?? readConfObject(conf, 'color'),
-                negColor: negColor ?? readConfObject(conf, 'negColor'),
-                posColor: posColor ?? readConfObject(conf, 'posColor'),
-                minSize: minSize ?? readConfObject(conf, 'minSize'),
+                scaleType: scale ?? conf?.scaleType?.value,
+                filled: fill ?? conf?.filled?.value,
+                displayCrossHatches: displayCrossHatches ?? conf?.displayCrossHatches?.value,
+                summaryScoreMode: summaryScoreMode ?? conf?.summaryScoreMode?.value,
+                color: color ?? conf?.color?.value,
+                negColor: negColor ?? conf?.negColor?.value,
+                posColor: posColor ?? conf?.posColor?.value,
+                minSize: minSize ?? conf?.minSize?.value,
             };
         },
         get autoscaleType() {

package/esm/shared/axisPropsFromTickScale.d.ts

@@ -2,6 +2,6 @@ import type { ScaleLinear, ScaleQuantize } from '@mui/x-charts-vendor/d3-scale';
 export default function axisPropsFromTickScale(scale: ScaleLinear<number, number> | ScaleQuantize<number>, tickCount: number): {
     range: number[];
     values: number[];
-    format: (d: import("d3-scale").NumberValue) => string;
+    format: (d: import("@mui/x-charts-vendor/d3-scale").NumberValue) => string;
     position: ScaleLinear<number, number, never> | ScaleQuantize<number, never>;
 };

package/esm/util.d.ts

@@ -19,7 +19,7 @@ export interface Source {
     color?: string;
     group?: string;
 }
-export declare function getScale({ domain, range, scaleType, pivotValue, inverted, }: ScaleOpts): import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleLogarithmic<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
+export declare function getScale({ domain, range, scaleType, pivotValue, inverted, }: ScaleOpts): import("@mui/x-charts-vendor/d3-scale").ScaleLinear<number, number, never> | import("@mui/x-charts-vendor/d3-scale").ScaleLogarithmic<number, number, never> | import("@mui/x-charts-vendor/d3-scale").ScaleQuantize<number, never>;
 export declare function getOrigin(scaleType: string): 0 | 1;
 export declare function getNiceDomain({ scaleType, domain, bounds, }: {
     scaleType: string;

package/esm/util.js

@@ -3,12 +3,12 @@ import { scaleLinear, scaleLog, scaleQuantize, } from '@mui/x-charts-vendor/d3-s
 export const YSCALEBAR_LABEL_OFFSET = 5;
 export const WIGGLE_COLOR_DEFAULT = '#f0f';
 export function getColorCallback(config, opts) {
-    const color = readConfObject(config, 'color');
     const colorIsCallback = config.color?.isCallback;
-    const colorIsDefault = color === WIGGLE_COLOR_DEFAULT;
     if (colorIsCallback) {
         return (feature) => readConfObject(config, 'color', { feature });
     }
+    const color = readConfObject(config, 'color');
+    const colorIsDefault = color === WIGGLE_COLOR_DEFAULT;
     if (!colorIsDefault) {
         return () => color;
     }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-wiggle",
-  "version": "4.1.13",
+  "version": "4.1.15",
   "type": "module",
   "description": "JBrowse 2 wiggle adapters, tracks, etc.",
   "keywords": [
@@ -21,13 +21,13 @@
     "esm"
   ],
   "dependencies": {
-    "@gmod/bbi": "^8.1.1",
-    "@gmod/hclust": "^1.0.7",
-    "@jbrowse/mobx-state-tree": "^5.5.0",
-    "@mui/icons-material": "^7.3.8",
-    "@mui/material": "^7.3.8",
+    "@gmod/bbi": "^9.0.7",
+    "@gmod/hclust": "^3.0.4",
+    "@jbrowse/mobx-state-tree": "^5.6.0",
+    "@mui/icons-material": "^7.3.9",
+    "@mui/material": "^7.3.9",
     "@mui/x-charts-vendor": "^8.26.0",
-    "@mui/x-data-grid": "^8.27.1",
+    "@mui/x-data-grid": "^8.28.2",
     "@types/file-saver-es": "^2.0.3",
     "colord": "^2.9.3",
     "copy-to-clipboard": "^3.3.3",
@@ -36,9 +36,9 @@
     "mobx": "^6.15.0",
     "mobx-react": "^9.2.1",
     "rxjs": "^7.8.2",
-    "@jbrowse/plugin-data-management": "^4.1.13",
-    "@jbrowse/core": "^4.1.13",
-    "@jbrowse/plugin-linear-genome-view": "^4.1.13"
+    "@jbrowse/plugin-data-management": "^4.1.15",
+    "@jbrowse/core": "^4.1.15",
+    "@jbrowse/plugin-linear-genome-view": "^4.1.15"
   },
   "peerDependencies": {
     "react": ">=18.0.0"