@jbrowse/plugin-wiggle 3.5.0 → 3.5.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/LinearWiggleDisplay/model.d.ts +1 -0
- package/dist/MultiLinearWiggleDisplay/components/SetColorDialog.js +4 -1
- package/dist/MultiLinearWiggleDisplay/components/SourcesGrid.js +6 -6
- package/dist/MultiLinearWiggleDisplay/model.d.ts +1 -0
- package/dist/shared/SharedWiggleMixin.d.ts +1 -0
- package/esm/LinearWiggleDisplay/model.d.ts +1 -0
- package/esm/MultiLinearWiggleDisplay/components/SetColorDialog.js +4 -1
- package/esm/MultiLinearWiggleDisplay/components/SourcesGrid.js +6 -6
- package/esm/MultiLinearWiggleDisplay/model.d.ts +1 -0
- package/esm/shared/SharedWiggleMixin.d.ts +1 -0
- package/package.json +5 -5
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@@ -203,6 +203,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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readonly renderDelay: number;
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readonly TooltipComponent: AnyReactComponentType;
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readonly selectedFeatureId: string | undefined;
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copyInfoToClipboard(feature: import("@jbrowse/core/util").Feature): void;
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} & {
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
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readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
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@@ -19,6 +19,9 @@ const useStyles = (0, mui_1.makeStyles)()({
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float: 'right',
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},
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});
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function HelpfulTips() {
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return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: ["Helpful tips", (0, jsx_runtime_1.jsxs)("ul", { children: [(0, jsx_runtime_1.jsx)("li", { children: "You can select rows in the table with the checkboxes" }), (0, jsx_runtime_1.jsx)("li", { children: "Multi-select is enabled with shift-click and control-click" }), (0, jsx_runtime_1.jsx)("li", { children: "The \"Move selected items up/down\" can re-arrange subtracks" }), (0, jsx_runtime_1.jsx)("li", { children: "Sorting the data grid itself can also re-arrange subtracks" }), (0, jsx_runtime_1.jsx)("li", { children: "Changes are applied when you hit Submit" }), (0, jsx_runtime_1.jsx)("li", { children: "You can click and drag the dialog box to move it on the screen" }), (0, jsx_runtime_1.jsx)("li", { children: "Columns in the table can be hidden using a vertical '...' menu on the right side of each column" })] })] }));
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}
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function SetColorDialog({ model, handleClose, }) {
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const { classes } = useStyles();
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const { sources } = model;
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@@ -26,7 +29,7 @@ function SetColorDialog({ model, handleClose, }) {
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const [showTips, setShowTips] = (0, util_1.useLocalStorage)('multiwiggle-showTips', false);
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return ((0, jsx_runtime_1.jsxs)(DraggableDialog_1.default, { open: true, onClose: handleClose, maxWidth: "xl", title: "Multi-wiggle color/arrangement editor", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { className: classes.content, children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", className: classes.float, onClick: () => {
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setShowTips(!showTips);
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}, children: showTips ? 'Hide tips' : 'Show tips' }), (0, jsx_runtime_1.jsx)("br", {}), showTips ? (
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}, children: showTips ? 'Hide tips' : 'Show tips' }), (0, jsx_runtime_1.jsx)("br", {}), showTips ? (0, jsx_runtime_1.jsx)(HelpfulTips, {}) : null, (0, jsx_runtime_1.jsx)(SourcesGrid_1.default, { rows: currLayout, onChange: setCurrLayout, showTips: showTips })] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", type: "submit", color: "inherit", onClick: () => {
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model.clearLayout();
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setCurrLayout(model.sources || []);
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}, children: "Clear custom settings" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
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@@ -68,15 +68,15 @@ function SourcesGrid({ rows, onChange, showTips, }) {
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});
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return ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { disabled: !selected.length, onClick: event => {
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setAnchorEl(event.currentTarget);
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}, children: "Change color of selected items" }), (0, jsx_runtime_1.jsxs)(material_1.Button, { onClick: () => {
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}, children: "Change color of selected items" }), (0, jsx_runtime_1.jsxs)(material_1.Button, { disabled: !selected.length, onClick: () => {
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onChange((0, util_2.moveUp)([...rows], selected));
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},
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}, children: [(0, jsx_runtime_1.jsx)(KeyboardArrowUp_1.default, {}), showTips ? 'Move selected items up' : null] }), (0, jsx_runtime_1.jsxs)(material_1.Button, { disabled: !selected.length, onClick: () => {
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onChange((0, util_2.moveDown)([...rows], selected));
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},
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}, children: [(0, jsx_runtime_1.jsx)(KeyboardArrowDown_1.default, {}), showTips ? 'Move selected items down' : null] }), (0, jsx_runtime_1.jsxs)(material_1.Button, { disabled: !selected.length, onClick: () => {
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onChange((0, util_2.moveUp)([...rows], selected, rows.length));
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},
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}, children: [(0, jsx_runtime_1.jsx)(KeyboardDoubleArrowUp_1.default, {}), showTips ? 'Move selected items to top' : null] }), (0, jsx_runtime_1.jsxs)(material_1.Button, { disabled: !selected.length, onClick: () => {
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onChange((0, util_2.moveDown)([...rows], selected, rows.length));
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},
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}, children: [(0, jsx_runtime_1.jsx)(KeyboardDoubleArrowDown_1.default, {}), showTips ? 'Move selected items to bottom' : null] }), (0, jsx_runtime_1.jsx)(ColorPicker_1.ColorPopover, { anchorEl: anchorEl, color: widgetColor, onChange: c => {
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setWidgetColor(c);
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for (const id of selected) {
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const elt = rows.find(f => f.name === id);
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@@ -87,7 +87,7 @@ function SourcesGrid({ rows, onChange, showTips, }) {
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onChange([...rows]);
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}, onClose: () => {
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setAnchorEl(null);
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} }), (0, jsx_runtime_1.jsx)("div", { style: { height: 400, width: '100%' }, children: (0, jsx_runtime_1.jsx)(x_data_grid_1.DataGrid, { getRowId: row => row.name, checkboxSelection: true, onRowSelectionModelChange: arg => {
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} }), (0, jsx_runtime_1.jsx)("div", { style: { height: 400, width: '100%' }, children: (0, jsx_runtime_1.jsx)(x_data_grid_1.DataGrid, { disableRowSelectionOnClick: true, getRowId: row => row.name, checkboxSelection: true, onRowSelectionModelChange: arg => {
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setSelected([...arg.ids]);
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}, rows: rows, rowHeight: 25, columnHeaderHeight: 33, columns: [
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{
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@@ -205,6 +205,7 @@ export declare function stateModelFactory(_pluginManager: PluginManager, configS
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readonly renderDelay: number;
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readonly TooltipComponent: AnyReactComponentType;
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readonly selectedFeatureId: string | undefined;
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copyInfoToClipboard(feature: Feature): void;
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} & {
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
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readonly featureUnderMouse: Feature | undefined;
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@@ -197,6 +197,7 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
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readonly renderDelay: number;
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readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
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readonly selectedFeatureId: string | undefined;
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copyInfoToClipboard(feature: Feature): void;
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} & {
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
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readonly featureUnderMouse: Feature | undefined;
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@@ -203,6 +203,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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readonly renderDelay: number;
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readonly TooltipComponent: AnyReactComponentType;
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readonly selectedFeatureId: string | undefined;
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copyInfoToClipboard(feature: import("@jbrowse/core/util").Feature): void;
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} & {
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
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readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
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@@ -13,6 +13,9 @@ const useStyles = makeStyles()({
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float: 'right',
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},
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});
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function HelpfulTips() {
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return (_jsxs(_Fragment, { children: ["Helpful tips", _jsxs("ul", { children: [_jsx("li", { children: "You can select rows in the table with the checkboxes" }), _jsx("li", { children: "Multi-select is enabled with shift-click and control-click" }), _jsx("li", { children: "The \"Move selected items up/down\" can re-arrange subtracks" }), _jsx("li", { children: "Sorting the data grid itself can also re-arrange subtracks" }), _jsx("li", { children: "Changes are applied when you hit Submit" }), _jsx("li", { children: "You can click and drag the dialog box to move it on the screen" }), _jsx("li", { children: "Columns in the table can be hidden using a vertical '...' menu on the right side of each column" })] })] }));
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}
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export default function SetColorDialog({ model, handleClose, }) {
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const { classes } = useStyles();
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const { sources } = model;
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@@ -20,7 +23,7 @@ export default function SetColorDialog({ model, handleClose, }) {
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const [showTips, setShowTips] = useLocalStorage('multiwiggle-showTips', false);
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return (_jsxs(DraggableDialog, { open: true, onClose: handleClose, maxWidth: "xl", title: "Multi-wiggle color/arrangement editor", children: [_jsxs(DialogContent, { className: classes.content, children: [_jsx(Button, { variant: "contained", className: classes.float, onClick: () => {
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setShowTips(!showTips);
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}, children: showTips ? 'Hide tips' : 'Show tips' }), _jsx("br", {}), showTips ?
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}, children: showTips ? 'Hide tips' : 'Show tips' }), _jsx("br", {}), showTips ? _jsx(HelpfulTips, {}) : null, _jsx(SourcesGrid, { rows: currLayout, onChange: setCurrLayout, showTips: showTips })] }), _jsxs(DialogActions, { children: [_jsx(Button, { variant: "contained", type: "submit", color: "inherit", onClick: () => {
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model.clearLayout();
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setCurrLayout(model.sources || []);
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}, children: "Clear custom settings" }), _jsx(Button, { variant: "contained", color: "secondary", onClick: () => {
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});
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return (_jsxs("div", { children: [_jsx(Button, { disabled: !selected.length, onClick: event => {
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setAnchorEl(event.currentTarget);
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}, children: "Change color of selected items" }), _jsxs(Button, { onClick: () => {
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}, children: "Change color of selected items" }), _jsxs(Button, { disabled: !selected.length, onClick: () => {
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onChange(moveUp([...rows], selected));
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},
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}, children: [_jsx(KeyboardArrowUpIcon, {}), showTips ? 'Move selected items up' : null] }), _jsxs(Button, { disabled: !selected.length, onClick: () => {
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onChange(moveDown([...rows], selected));
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},
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}, children: [_jsx(KeyboardArrowDownIcon, {}), showTips ? 'Move selected items down' : null] }), _jsxs(Button, { disabled: !selected.length, onClick: () => {
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onChange(moveUp([...rows], selected, rows.length));
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},
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}, children: [_jsx(KeyboardDoubleArrowUpIcon, {}), showTips ? 'Move selected items to top' : null] }), _jsxs(Button, { disabled: !selected.length, onClick: () => {
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onChange(moveDown([...rows], selected, rows.length));
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},
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}, children: [_jsx(KeyboardDoubleArrowDownIcon, {}), showTips ? 'Move selected items to bottom' : null] }), _jsx(ColorPopover, { anchorEl: anchorEl, color: widgetColor, onChange: c => {
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setWidgetColor(c);
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for (const id of selected) {
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const elt = rows.find(f => f.name === id);
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onChange([...rows]);
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}, onClose: () => {
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setAnchorEl(null);
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} }), _jsx("div", { style: { height: 400, width: '100%' }, children: _jsx(DataGrid, { getRowId: row => row.name, checkboxSelection: true, onRowSelectionModelChange: arg => {
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} }), _jsx("div", { style: { height: 400, width: '100%' }, children: _jsx(DataGrid, { disableRowSelectionOnClick: true, getRowId: row => row.name, checkboxSelection: true, onRowSelectionModelChange: arg => {
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setSelected([...arg.ids]);
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}, rows: rows, rowHeight: 25, columnHeaderHeight: 33, columns: [
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{
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@@ -205,6 +205,7 @@ export declare function stateModelFactory(_pluginManager: PluginManager, configS
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readonly renderDelay: number;
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readonly TooltipComponent: AnyReactComponentType;
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readonly selectedFeatureId: string | undefined;
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copyInfoToClipboard(feature: Feature): void;
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} & {
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
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readonly featureUnderMouse: Feature | undefined;
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@@ -197,6 +197,7 @@ export default function SharedWiggleMixin(configSchema: AnyConfigurationSchemaTy
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readonly renderDelay: number;
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readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
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readonly selectedFeatureId: string | undefined;
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copyInfoToClipboard(feature: Feature): void;
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} & {
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
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readonly featureUnderMouse: Feature | undefined;
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package/package.json
CHANGED
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{
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"name": "@jbrowse/plugin-wiggle",
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"version": "3.5.
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"version": "3.5.1",
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"description": "JBrowse 2 wiggle adapters, tracks, etc.",
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"keywords": [
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"jbrowse",
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},
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"dependencies": {
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"@gmod/bbi": "^7.0.0",
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"@jbrowse/core": "^3.5.
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"@jbrowse/plugin-data-management": "^3.5.
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"@jbrowse/plugin-linear-genome-view": "^3.5.
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"@jbrowse/core": "^3.5.1",
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"@jbrowse/plugin-data-management": "^3.5.1",
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"@jbrowse/plugin-linear-genome-view": "^3.5.1",
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"@mui/icons-material": "^7.0.0",
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"@mui/material": "^7.0.0",
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"@mui/x-charts-vendor": "^8.0.0",
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"distModule": "esm/index.js",
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"srcModule": "src/index.ts",
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"module": "esm/index.js",
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"gitHead": "
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"gitHead": "cb8859da9d838ad2594964777c5c54f385d98f5e"
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}
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