@jbrowse/plugin-wiggle 2.4.1 → 2.4.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (7) hide show
  1. package/dist/LinearWiggleDisplay/models/model.d.ts +27 -39
  2. package/dist/MultiLinearWiggleDisplay/models/model.d.ts +11 -19
  3. package/dist/index.d.ts +22 -38
  4. package/esm/LinearWiggleDisplay/models/model.d.ts +27 -39
  5. package/esm/MultiLinearWiggleDisplay/models/model.d.ts +11 -19
  6. package/esm/index.d.ts +22 -38
  7. package/package.json +2 -2
package/dist/LinearWiggleDisplay/models/model.d.ts CHANGED
@@ -41,9 +41,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  message: string | undefined;
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  maxHeightReached: boolean;
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  ReactComponent: ({ model, }: {
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- model: any; /**
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- * #property
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- */
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+ model: any;
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  }) => any;
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  renderProps: any;
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  } & {
@@ -64,7 +62,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  setError(error: unknown): void;
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  reload(): void;
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  beforeDestroy(): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; /**
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+ * #property
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+ */
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  userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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  userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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  } & {
@@ -189,12 +189,14 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  reload(): void;
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  } & {
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  currBpPerPx: number;
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- scrollTop: number;
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+ scrollTop: number; /**
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+ * #property
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+ */
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  message: string;
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  featureIdUnderMouse: string | undefined;
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  contextMenuFeature: Feature | undefined;
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- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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+ estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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+ estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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  } & {
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  readonly height: number;
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  readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -203,48 +205,39 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  readonly renderDelay: number;
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  readonly TooltipComponent: React.FC<any>;
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  readonly selectedFeatureId: string | undefined;
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- readonly DisplayMessageComponent: React.FC<any> | undefined; /**
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- * #action
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- */
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+ readonly DisplayMessageComponent: React.FC<any> | undefined;
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  } & {
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- readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>; /**
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- * #action
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- */
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+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
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  readonly featureUnderMouse: Feature | undefined;
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- getFeatureOverlapping(blockKey: string, x: number, y: number): any; /**
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- * #action
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- */
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+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
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  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
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  searchFeatureByID(id: string): [number, number, number, number] | undefined;
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  readonly currentBytesRequested: number;
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  readonly currentFeatureScreenDensity: number;
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  readonly maxFeatureScreenDensity: any;
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- /**
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- * #getter
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- */
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  readonly estimatedStatsReady: boolean;
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  readonly maxAllowableBytes: number;
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  } & {
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  setMessage(message: string): void;
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+ } & {
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  afterAttach(): void;
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- estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
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- headers?: Record<string, string> | undefined;
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- signal?: AbortSignal | undefined;
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- filters?: string[] | undefined;
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- }): Promise<{}>;
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- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
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- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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- clearRegionStats(): void;
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+ estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
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+ setRegionsStatsP(arg: any): void;
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+ setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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+ clearRegionsStats(): void;
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  setHeight(displayHeight: number): number;
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  resizeHeight(distance: number): number;
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  setScrollTop(scrollTop: number): void;
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- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
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+ updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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  setCurrBpPerPx(n: number): void;
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  deleteBlock(key: string): void;
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  selectFeature(feature: Feature): void;
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  clearFeatureSelection(): void;
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  setFeatureIdUnderMouse(feature: string | undefined): void;
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+ /**
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+ * #getter
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+ */
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  reload(): void;
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  setContextMenuFeature(feature?: Feature | undefined): void;
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  } & {
@@ -252,18 +245,13 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  readonly regionTooLargeReason: string;
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  } & {
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  reload(): Promise<void>;
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+ } & {
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  afterAttach(): void;
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  } & {
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  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
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  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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- contextMenuItems(): {
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- label: string;
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- icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
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- muiName: string;
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- };
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- onClick: () => void;
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- }[];
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+ contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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  renderProps(): any;
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  } & {
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  renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
@@ -540,9 +528,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  message: string | undefined;
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  maxHeightReached: boolean;
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  ReactComponent: ({ model, }: {
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- model: any; /**
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- * #property
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- */
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+ model: any;
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  }) => any;
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  renderProps: any;
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  } & {
@@ -563,7 +549,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
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  setError(error: unknown): void;
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  reload(): void;
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  beforeDestroy(): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; /**
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+ * #property
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+ */
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  userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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  userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
569
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  }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
package/dist/MultiLinearWiggleDisplay/models/model.d.ts CHANGED
@@ -140,8 +140,8 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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  message: string;
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  featureIdUnderMouse: string | undefined;
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  contextMenuFeature: Feature | undefined;
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- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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+ estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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+ estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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  } & {
146
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  readonly height: number;
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  readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -154,7 +154,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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  } & {
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  readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
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  readonly featureUnderMouse: Feature | undefined;
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- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
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+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
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  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
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  searchFeatureByID(id: string): [number, number, number, number] | undefined;
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  readonly currentBytesRequested: number;
@@ -164,19 +164,16 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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  readonly maxAllowableBytes: number;
165
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  } & {
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  setMessage(message: string): void;
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+ } & {
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  afterAttach(): void;
168
- estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
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- headers?: Record<string, string> | undefined;
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- signal?: AbortSignal | undefined;
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- filters?: string[] | undefined;
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- }): Promise<{}>;
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- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
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- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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- clearRegionStats(): void;
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+ estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
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+ setRegionsStatsP(arg: any): void;
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+ setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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+ clearRegionsStats(): void;
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  setHeight(displayHeight: number): number;
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  resizeHeight(distance: number): number;
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  setScrollTop(scrollTop: number): void;
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- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
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+ updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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  setCurrBpPerPx(n: number): void;
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  deleteBlock(key: string): void;
@@ -190,18 +187,13 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
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  readonly regionTooLargeReason: string;
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  } & {
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  reload(): Promise<void>;
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+ } & {
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  afterAttach(): void;
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  } & {
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  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
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  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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- contextMenuItems(): {
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- label: string;
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- icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
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- muiName: string;
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- };
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- onClick: () => void;
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- }[];
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+ contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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  renderProps(): any;
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  } & {
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  renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
package/dist/index.d.ts CHANGED
@@ -186,8 +186,8 @@ export default class WigglePlugin extends Plugin {
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  message: string;
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  featureIdUnderMouse: string | undefined;
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  contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
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- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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+ estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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+ estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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  } & {
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  readonly height: number;
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  readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -200,7 +200,7 @@ export default class WigglePlugin extends Plugin {
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  } & {
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  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
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  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
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- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
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+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
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  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
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  searchFeatureByID(id: string): [number, number, number, number] | undefined;
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  readonly currentBytesRequested: number;
@@ -210,19 +210,16 @@ export default class WigglePlugin extends Plugin {
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  readonly maxAllowableBytes: number;
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  } & {
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  setMessage(message: string): void;
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+ } & {
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  afterAttach(): void;
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- estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
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- headers?: Record<string, string> | undefined;
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- signal?: AbortSignal | undefined;
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- filters?: string[] | undefined;
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- }): Promise<{}>;
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- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
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- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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- clearRegionStats(): void;
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+ estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
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+ setRegionsStatsP(arg: any): void;
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+ setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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+ clearRegionsStats(): void;
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  setHeight(displayHeight: number): number;
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  resizeHeight(distance: number): number;
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  setScrollTop(scrollTop: number): void;
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- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
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+ updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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  setCurrBpPerPx(n: number): void;
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  deleteBlock(key: string): void;
@@ -236,18 +233,13 @@ export default class WigglePlugin extends Plugin {
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  readonly regionTooLargeReason: string;
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  } & {
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  reload(): Promise<void>;
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+ } & {
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  afterAttach(): void;
240
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  } & {
241
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  regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
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  regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | null;
243
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  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
244
- contextMenuItems(): {
245
- label: string;
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- icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
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- muiName: string;
248
- };
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- onClick: () => void;
250
- }[];
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+ contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
251
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  renderProps(): any;
252
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  } & {
253
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  renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
@@ -485,8 +477,8 @@ export default class WigglePlugin extends Plugin {
485
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  message: string;
486
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  featureIdUnderMouse: string | undefined;
487
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  contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
488
- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
489
- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
480
+ estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
481
+ estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
490
482
  } & {
491
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  readonly height: number;
492
484
  readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -499,7 +491,7 @@ export default class WigglePlugin extends Plugin {
499
491
  } & {
500
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  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
501
493
  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
502
- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
494
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
503
495
  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
504
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  searchFeatureByID(id: string): [number, number, number, number] | undefined;
505
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  readonly currentBytesRequested: number;
@@ -509,19 +501,16 @@ export default class WigglePlugin extends Plugin {
509
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  readonly maxAllowableBytes: number;
510
502
  } & {
511
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  setMessage(message: string): void;
504
+ } & {
512
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  afterAttach(): void;
513
- estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
514
- headers?: Record<string, string> | undefined;
515
- signal?: AbortSignal | undefined;
516
- filters?: string[] | undefined;
517
- }): Promise<{}>;
518
- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
519
- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
520
- clearRegionStats(): void;
506
+ estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
507
+ setRegionsStatsP(arg: any): void;
508
+ setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
509
+ clearRegionsStats(): void;
521
510
  setHeight(displayHeight: number): number;
522
511
  resizeHeight(distance: number): number;
523
512
  setScrollTop(scrollTop: number): void;
524
- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
513
+ updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
525
514
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
526
515
  setCurrBpPerPx(n: number): void;
527
516
  deleteBlock(key: string): void;
@@ -535,18 +524,13 @@ export default class WigglePlugin extends Plugin {
535
524
  readonly regionTooLargeReason: string;
536
525
  } & {
537
526
  reload(): Promise<void>;
527
+ } & {
538
528
  afterAttach(): void;
539
529
  } & {
540
530
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
541
531
  regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | null;
542
532
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
543
- contextMenuItems(): {
544
- label: string;
545
- icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
546
- muiName: string;
547
- };
548
- onClick: () => void;
549
- }[];
533
+ contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
550
534
  renderProps(): any;
551
535
  } & {
552
536
  renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
package/esm/LinearWiggleDisplay/models/model.d.ts CHANGED
@@ -41,9 +41,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
41
41
  message: string | undefined;
42
42
  maxHeightReached: boolean;
43
43
  ReactComponent: ({ model, }: {
44
- model: any; /**
45
- * #property
46
- */
44
+ model: any;
47
45
  }) => any;
48
46
  renderProps: any;
49
47
  } & {
@@ -64,7 +62,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
64
62
  setError(error: unknown): void;
65
63
  reload(): void;
66
64
  beforeDestroy(): void;
67
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
65
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; /**
66
+ * #property
67
+ */
68
68
  userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
69
69
  userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
70
70
  } & {
@@ -189,12 +189,14 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
189
189
  reload(): void;
190
190
  } & {
191
191
  currBpPerPx: number;
192
- scrollTop: number;
192
+ scrollTop: number; /**
193
+ * #property
194
+ */
193
195
  message: string;
194
196
  featureIdUnderMouse: string | undefined;
195
197
  contextMenuFeature: Feature | undefined;
196
- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
197
- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
198
+ estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
199
+ estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
198
200
  } & {
199
201
  readonly height: number;
200
202
  readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -203,48 +205,39 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
203
205
  readonly renderDelay: number;
204
206
  readonly TooltipComponent: React.FC<any>;
205
207
  readonly selectedFeatureId: string | undefined;
206
- readonly DisplayMessageComponent: React.FC<any> | undefined; /**
207
- * #action
208
- */
208
+ readonly DisplayMessageComponent: React.FC<any> | undefined;
209
209
  } & {
210
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>; /**
211
- * #action
212
- */
210
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
213
211
  readonly featureUnderMouse: Feature | undefined;
214
- getFeatureOverlapping(blockKey: string, x: number, y: number): any; /**
215
- * #action
216
- */
212
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
217
213
  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
218
214
  searchFeatureByID(id: string): [number, number, number, number] | undefined;
219
215
  readonly currentBytesRequested: number;
220
216
  readonly currentFeatureScreenDensity: number;
221
217
  readonly maxFeatureScreenDensity: any;
222
- /**
223
- * #getter
224
- */
225
218
  readonly estimatedStatsReady: boolean;
226
219
  readonly maxAllowableBytes: number;
227
220
  } & {
228
221
  setMessage(message: string): void;
222
+ } & {
229
223
  afterAttach(): void;
230
- estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
231
- headers?: Record<string, string> | undefined;
232
- signal?: AbortSignal | undefined;
233
- filters?: string[] | undefined;
234
- }): Promise<{}>;
235
- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
236
- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
237
- clearRegionStats(): void;
224
+ estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
225
+ setRegionsStatsP(arg: any): void;
226
+ setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
227
+ clearRegionsStats(): void;
238
228
  setHeight(displayHeight: number): number;
239
229
  resizeHeight(distance: number): number;
240
230
  setScrollTop(scrollTop: number): void;
241
- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
231
+ updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
242
232
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
243
233
  setCurrBpPerPx(n: number): void;
244
234
  deleteBlock(key: string): void;
245
235
  selectFeature(feature: Feature): void;
246
236
  clearFeatureSelection(): void;
247
237
  setFeatureIdUnderMouse(feature: string | undefined): void;
238
+ /**
239
+ * #getter
240
+ */
248
241
  reload(): void;
249
242
  setContextMenuFeature(feature?: Feature | undefined): void;
250
243
  } & {
@@ -252,18 +245,13 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
252
245
  readonly regionTooLargeReason: string;
253
246
  } & {
254
247
  reload(): Promise<void>;
248
+ } & {
255
249
  afterAttach(): void;
256
250
  } & {
257
251
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
258
252
  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
259
253
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
260
- contextMenuItems(): {
261
- label: string;
262
- icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
263
- muiName: string;
264
- };
265
- onClick: () => void;
266
- }[];
254
+ contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
267
255
  renderProps(): any;
268
256
  } & {
269
257
  renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
@@ -540,9 +528,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
540
528
  message: string | undefined;
541
529
  maxHeightReached: boolean;
542
530
  ReactComponent: ({ model, }: {
543
- model: any; /**
544
- * #property
545
- */
531
+ model: any;
546
532
  }) => any;
547
533
  renderProps: any;
548
534
  } & {
@@ -563,7 +549,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
563
549
  setError(error: unknown): void;
564
550
  reload(): void;
565
551
  beforeDestroy(): void;
566
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
552
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; /**
553
+ * #property
554
+ */
567
555
  userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
568
556
  userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
569
557
  }>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
package/esm/MultiLinearWiggleDisplay/models/model.d.ts CHANGED
@@ -140,8 +140,8 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
140
140
  message: string;
141
141
  featureIdUnderMouse: string | undefined;
142
142
  contextMenuFeature: Feature | undefined;
143
- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
144
- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
143
+ estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
144
+ estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
145
145
  } & {
146
146
  readonly height: number;
147
147
  readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -154,7 +154,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
154
154
  } & {
155
155
  readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
156
156
  readonly featureUnderMouse: Feature | undefined;
157
- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
157
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
158
158
  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
159
159
  searchFeatureByID(id: string): [number, number, number, number] | undefined;
160
160
  readonly currentBytesRequested: number;
@@ -164,19 +164,16 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
164
164
  readonly maxAllowableBytes: number;
165
165
  } & {
166
166
  setMessage(message: string): void;
167
+ } & {
167
168
  afterAttach(): void;
168
- estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
169
- headers?: Record<string, string> | undefined;
170
- signal?: AbortSignal | undefined;
171
- filters?: string[] | undefined;
172
- }): Promise<{}>;
173
- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
174
- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
175
- clearRegionStats(): void;
169
+ estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
170
+ setRegionsStatsP(arg: any): void;
171
+ setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
172
+ clearRegionsStats(): void;
176
173
  setHeight(displayHeight: number): number;
177
174
  resizeHeight(distance: number): number;
178
175
  setScrollTop(scrollTop: number): void;
179
- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
176
+ updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
180
177
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
181
178
  setCurrBpPerPx(n: number): void;
182
179
  deleteBlock(key: string): void;
@@ -190,18 +187,13 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
190
187
  readonly regionTooLargeReason: string;
191
188
  } & {
192
189
  reload(): Promise<void>;
190
+ } & {
193
191
  afterAttach(): void;
194
192
  } & {
195
193
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
196
194
  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
197
195
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
198
- contextMenuItems(): {
199
- label: string;
200
- icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
201
- muiName: string;
202
- };
203
- onClick: () => void;
204
- }[];
196
+ contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
205
197
  renderProps(): any;
206
198
  } & {
207
199
  renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
package/esm/index.d.ts CHANGED
@@ -186,8 +186,8 @@ export default class WigglePlugin extends Plugin {
186
186
  message: string;
187
187
  featureIdUnderMouse: string | undefined;
188
188
  contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
189
- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
190
- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
189
+ estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
190
+ estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
191
191
  } & {
192
192
  readonly height: number;
193
193
  readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -200,7 +200,7 @@ export default class WigglePlugin extends Plugin {
200
200
  } & {
201
201
  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
202
202
  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
203
- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
203
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
204
204
  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
205
205
  searchFeatureByID(id: string): [number, number, number, number] | undefined;
206
206
  readonly currentBytesRequested: number;
@@ -210,19 +210,16 @@ export default class WigglePlugin extends Plugin {
210
210
  readonly maxAllowableBytes: number;
211
211
  } & {
212
212
  setMessage(message: string): void;
213
+ } & {
213
214
  afterAttach(): void;
214
- estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
215
- headers?: Record<string, string> | undefined;
216
- signal?: AbortSignal | undefined;
217
- filters?: string[] | undefined;
218
- }): Promise<{}>;
219
- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
220
- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
221
- clearRegionStats(): void;
215
+ estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
216
+ setRegionsStatsP(arg: any): void;
217
+ setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
218
+ clearRegionsStats(): void;
222
219
  setHeight(displayHeight: number): number;
223
220
  resizeHeight(distance: number): number;
224
221
  setScrollTop(scrollTop: number): void;
225
- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
222
+ updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
226
223
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
227
224
  setCurrBpPerPx(n: number): void;
228
225
  deleteBlock(key: string): void;
@@ -236,18 +233,13 @@ export default class WigglePlugin extends Plugin {
236
233
  readonly regionTooLargeReason: string;
237
234
  } & {
238
235
  reload(): Promise<void>;
236
+ } & {
239
237
  afterAttach(): void;
240
238
  } & {
241
239
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
242
240
  regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | null;
243
241
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
244
- contextMenuItems(): {
245
- label: string;
246
- icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
247
- muiName: string;
248
- };
249
- onClick: () => void;
250
- }[];
242
+ contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
251
243
  renderProps(): any;
252
244
  } & {
253
245
  renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
@@ -485,8 +477,8 @@ export default class WigglePlugin extends Plugin {
485
477
  message: string;
486
478
  featureIdUnderMouse: string | undefined;
487
479
  contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
488
- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
489
- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
480
+ estimatedRegionsStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
481
+ estimatedRegionsStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
490
482
  } & {
491
483
  readonly height: number;
492
484
  readonly blockType: "dynamicBlocks" | "staticBlocks";
@@ -499,7 +491,7 @@ export default class WigglePlugin extends Plugin {
499
491
  } & {
500
492
  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
501
493
  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
502
- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
494
+ getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
503
495
  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
504
496
  searchFeatureByID(id: string): [number, number, number, number] | undefined;
505
497
  readonly currentBytesRequested: number;
@@ -509,19 +501,16 @@ export default class WigglePlugin extends Plugin {
509
501
  readonly maxAllowableBytes: number;
510
502
  } & {
511
503
  setMessage(message: string): void;
504
+ } & {
512
505
  afterAttach(): void;
513
- estimateRegionsStats(regions: import("@jbrowse/core/util/types").Region[], opts: {
514
- headers?: Record<string, string> | undefined;
515
- signal?: AbortSignal | undefined;
516
- filters?: string[] | undefined;
517
- }): Promise<{}>;
518
- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
519
- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
520
- clearRegionStats(): void;
506
+ estimateRegionsStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
507
+ setRegionsStatsP(arg: any): void;
508
+ setRegionsStats(estimatedRegionsStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
509
+ clearRegionsStats(): void;
521
510
  setHeight(displayHeight: number): number;
522
511
  resizeHeight(distance: number): number;
523
512
  setScrollTop(scrollTop: number): void;
524
- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
513
+ updateStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
525
514
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
526
515
  setCurrBpPerPx(n: number): void;
527
516
  deleteBlock(key: string): void;
@@ -535,18 +524,13 @@ export default class WigglePlugin extends Plugin {
535
524
  readonly regionTooLargeReason: string;
536
525
  } & {
537
526
  reload(): Promise<void>;
527
+ } & {
538
528
  afterAttach(): void;
539
529
  } & {
540
530
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util/types").Region): "" | "Force load to see features";
541
531
  regionCannotBeRendered(_region: import("@jbrowse/core/util/types").Region): JSX.Element | null;
542
532
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
543
- contextMenuItems(): {
544
- label: string;
545
- icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
546
- muiName: string;
547
- };
548
- onClick: () => void;
549
- }[];
533
+ contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
550
534
  renderProps(): any;
551
535
  } & {
552
536
  renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@jbrowse/plugin-wiggle",
3
- "version": "2.4.1",
3
+ "version": "2.4.2",
4
4
  "description": "JBrowse 2 wiggle adapters, tracks, etc.",
5
5
  "keywords": [
6
6
  "jbrowse",
@@ -69,5 +69,5 @@
69
69
  "distModule": "esm/index.js",
70
70
  "srcModule": "src/index.ts",
71
71
  "module": "esm/index.js",
72
- "gitHead": "747c50c4edc0184827efa4f8dfc576ca9a72caeb"
72
+ "gitHead": "36e382a70e7d220343b873e7e6aba5c83e5342c8"
73
73
  }