npm - @jbrowse/plugin-wiggle - Versions diffs - 2.3.4 → 2.4.0 - Mend

@jbrowse/plugin-wiggle 2.3.4 → 2.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (62) hide show

package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { WiggleDisplayModel } from '../models/model';
-import YScaleBar from './YScaleBar';
+import YScaleBar from '../../shared/YScaleBar';
 declare const LinearWiggleDisplay: (props: {
     model: WiggleDisplayModel;
 }) => JSX.Element;

package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js CHANGED Viewed

@@ -9,7 +9,7 @@ const mobx_react_1 = require("mobx-react");
 const util_1 = require("@jbrowse/core/util");
 const configuration_1 = require("@jbrowse/core/configuration");
 const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-const YScaleBar_1 = __importDefault(require("./YScaleBar"));
+const YScaleBar_1 = __importDefault(require("../../shared/YScaleBar"));
 exports.YScaleBar = YScaleBar_1.default;
 const LinearWiggleDisplay = (0, mobx_react_1.observer)((props) => {
     const { model } = props;

package/dist/LinearWiggleDisplay/components/WiggleDisplayComponent.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"WiggleDisplayComponent.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,6CAI2B;AAC3B,+DAAqD;AACrD,kFAG2C;AAI3C,~~4DAAmC~~;~~AAqC1B~~,oBArCF,mBAAS,CAqCE;AAjClB,MAAM,mBAAmB,GAAG,IAAA,qBAAQ,EAAC,CAAC,KAAoC,EAAE,EAAE;IAC5E,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAE9C,MAAM,EAAE,WAAW,EAAE,GAAG,IAAA,wBAAiB,EAAC,KAAK,CAAQ,CAAA;IACvD,MAAM,KAAK,GAAG,IAAA,yBAAkB,EAAC,KAAK,CAAC,CAAA;IACvC,MAAM,IAAI,GACR,WAAW,KAAK,aAAa;QAC3B,CAAC,CAAC,IAAA,kBAAW,EAAC,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,EAAE,IAAI,CAAC,GAAG,GAAG;QACjD,CAAC,CAAC,EAAE,CAAA;IACR,OAAO,CACL;QACE,8BAAC,sDAA0B,OAAK,KAAK,GAAI;QACxC,KAAK,IAAI,aAAa,CAAC,CAAC,CAAC,CACxB,uCACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI;gBACJ,aAAa,EAAE,MAAM;gBACrB,MAAM;gBACN,KAAK,EAAE,EAAE;aACV;YAED,8BAAC,mBAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CACvB,CACP,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,mBAAmB,CAAA"}
1	+ {"version":3,"file":"WiggleDisplayComponent.js","sourceRoot":"","sources":["../../../src/LinearWiggleDisplay/components/WiggleDisplayComponent.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,6CAI2B;AAC3B,+DAAqD;AACrD,kFAG2C;AAI3C,uEAA8C;AAqCrC,oBArCF,mBAAS,CAqCE;AAjClB,MAAM,mBAAmB,GAAG,IAAA,qBAAQ,EAAC,CAAC,KAAoC,EAAE,EAAE;IAC5E,MAAM,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACvB,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAE9C,MAAM,EAAE,WAAW,EAAE,GAAG,IAAA,wBAAiB,EAAC,KAAK,CAAQ,CAAA;IACvD,MAAM,KAAK,GAAG,IAAA,yBAAkB,EAAC,KAAK,CAAC,CAAA;IACvC,MAAM,IAAI,GACR,WAAW,KAAK,aAAa;QAC3B,CAAC,CAAC,IAAA,kBAAW,EAAC,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,EAAE,IAAI,CAAC,GAAG,GAAG;QACjD,CAAC,CAAC,EAAE,CAAA;IACR,OAAO,CACL;QACE,8BAAC,sDAA0B,OAAK,KAAK,GAAI;QACxC,KAAK,IAAI,aAAa,CAAC,CAAC,CAAC,CACxB,uCACE,KAAK,EAAE;gBACL,QAAQ,EAAE,UAAU;gBACpB,GAAG,EAAE,CAAC;gBACN,IAAI;gBACJ,aAAa,EAAE,MAAM;gBACrB,MAAM;gBACN,KAAK,EAAE,EAAE;aACV;YAED,8BAAC,mBAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CACvB,CACP,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,mBAAmB,CAAA"}

package/dist/LinearWiggleDisplay/models/model.d.ts CHANGED Viewed

@@ -12,22 +12,20 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     type: import("mobx-state-tree").ISimpleType<string>;
     rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 } & {
-    height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>; /**
-     * #property
-     */
+    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
         region: import("mobx-state-tree").IModelType<{
             refName: import("mobx-state-tree").ISimpleType<string>;
             start: import("mobx-state-tree").ISimpleType<number>;
             end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>; /**
+             * #property
+             */
         } & {
             assemblyName: import("mobx-state-tree").ISimpleType<string>;
         }, {
-            setRefName(newRefName: string): void; /**
-             * #property
-             */
+            setRefName(newRefName: string): void;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
         reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
         isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
@@ -43,11 +41,15 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         message: string | undefined;
         maxHeightReached: boolean;
         ReactComponent: ({ model, }: {
-            model: any;
+            model: any; /**
+             * #property
+             */
         }) => any;
         renderProps: any;
     } & {
-        doReload(): void;
+        doReload(): void; /**
+         * #property
+         */
         afterAttach(): void;
         setStatus(message: string): void;
         setLoading(abortController: AbortController): void;
@@ -158,14 +160,13 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
             type: string;
             rpcDriverName: string | undefined;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            /**
-             * #property
-             */
             rendererTypeName: string;
             error: unknown;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
+            type: import("mobx-state-tree").ISimpleType<string>; /**
+             * #property
+             */
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
@@ -175,13 +176,13 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     readonly adapterConfig: any;
     readonly parentTrack: any;
     renderProps(): any;
-    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType; /**
-     * #action
-     */
+    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
     readonly DisplayMessageComponent: React.FC<any> | undefined;
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-    regionCannotBeRendered(): undefined;
+    regionCannotBeRendered(): undefined; /**
+     * #action
+     */
 } & {
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
@@ -195,6 +196,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
+    readonly height: any;
     readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
@@ -212,9 +214,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     readonly currentFeatureScreenDensity: number;
     readonly maxFeatureScreenDensity: any;
     readonly estimatedStatsReady: boolean;
-    readonly maxAllowableBytes: number; /**
-     * #getter
-     */
+    readonly maxAllowableBytes: number;
 } & {
     setMessage(message: string): void;
     afterAttach(): void;
@@ -226,7 +226,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
     setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
     clearRegionStats(): void;
-    setHeight(displayHeight: number): number;
+    setHeight(displayHeight: number): any;
     resizeHeight(distance: number): number;
     setScrollTop(scrollTop: number): void;
     updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
@@ -236,10 +236,10 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     selectFeature(feature: Feature): void;
     clearFeatureSelection(): void;
     setFeatureIdUnderMouse(feature: string | undefined): void;
-    reload(): void;
-    setContextMenuFeature(feature?: Feature | undefined): void; /**
+    reload(): void; /**
      * #method
      */
+    setContextMenuFeature(feature?: Feature | undefined): void;
 } & {
     readonly regionTooLarge: boolean;
     readonly regionTooLargeReason: string;
@@ -261,6 +261,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
 } & {
     renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
         overrideHeight: number;
+        theme: import("@mui/material").ThemeOptions;
     }): Promise<JSX.Element>;
 } & {
     message: string | undefined;
@@ -459,7 +460,7 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     /**
      * #getter
      */
-    readonly fillSetting: 1 | 2 | 0;
+    readonly fillSetting: 2 | 0 | 1;
 } & {
     /**
      * #method
@@ -494,12 +495,75 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
      */
     renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
         overrideHeight: number;
+        theme: import("@mui/material").ThemeOptions;
     }): Promise<JSX.Element>;
-}, import("mobx-state-tree")._NotCustomized, {
+}, {
+    type: string;
+} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("mobx-state-tree").ISimpleType<string>;
+    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+} & {
+    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
+        key: import("mobx-state-tree").ISimpleType<string>;
+        region: import("mobx-state-tree").IModelType<{
+            refName: import("mobx-state-tree").ISimpleType<string>;
+            start: import("mobx-state-tree").ISimpleType<number>;
+            end: import("mobx-state-tree").ISimpleType<number>;
+            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>; /**
+             * #property
+             */
+        } & {
+            assemblyName: import("mobx-state-tree").ISimpleType<string>;
+        }, {
+            setRefName(newRefName: string): void;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    }, {
+        renderInProgress: AbortController | undefined;
+        filled: boolean;
+        reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
+        features: Map<string, Feature> | undefined;
+        layout: any;
+        status: string;
+        error: unknown;
+        message: string | undefined;
+        maxHeightReached: boolean;
+        ReactComponent: ({ model, }: {
+            model: any; /**
+             * #property
+             */
+        }) => any;
+        renderProps: any;
+    } & {
+        doReload(): void; /**
+         * #property
+         */
+        afterAttach(): void;
+        setStatus(message: string): void;
+        setLoading(abortController: AbortController): void;
+        setMessage(messageText: string): void;
+        setRendered(props: {
+            reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
+            features: Map<string, Feature>;
+            layout: any;
+            maxHeightReached: boolean;
+            renderProps: any;
+        } | undefined): void;
+        setError(error: unknown): void;
+        reload(): void;
+        beforeDestroy(): void;
+    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
     type: string;
-    height: number;
     id: string;
     rpcDriverName: string | undefined;
+    heightPreConfig: number | undefined;
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 } & import("mobx-state-tree")._NotCustomized>;

package/dist/LinearWiggleDisplay/models/model.js CHANGED Viewed

@@ -35,7 +35,7 @@ const mobx_state_tree_1 = require("mobx-state-tree");
 const react_d3_axis_mod_1 = require("react-d3-axis-mod");
 const util_2 = require("../../util");
 const Tooltip_1 = __importDefault(require("../components/Tooltip"));
-const WiggleDisplayComponent_1 = require("../components/WiggleDisplayComponent");
+const YScaleBar_1 = __importDefault(require("../../shared/YScaleBar"));
 const SetMinMaxDlg = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../../shared/SetMinMaxDialog'))));
 const SetColorDlg = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../components/SetColorDialog'))));
 // using a map because it preserves order
@@ -655,7 +655,7 @@ function stateModelFactory(pluginManager, configSchema) {
                 return (react_1.default.createElement(react_1.default.Fragment, null,
                     react_1.default.createElement("g", { id: "snpcov" }, await superRenderSvg(opts)),
                     needsScalebar && stats ? (react_1.default.createElement("g", { transform: `translate(${Math.max(-offsetPx, 0)})` },
-                        react_1.default.createElement(WiggleDisplayComponent_1.YScaleBar, { model: self, orientation: "left" }))) : null));
+                        react_1.default.createElement(YScaleBar_1.default, { model: self, orientation: "left" }))) : null));
             },
         };
     });

package/dist/LinearWiggleDisplay/models/model.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.d.ts CHANGED Viewed

@@ -1,13 +1,13 @@
 /// <reference types="react" />
 import { WiggleDisplayModel } from '../models/model';
-import YScaleBar from './YScaleBar';
+import YScaleBar from '../../shared/YScaleBar';
 export declare const StatBars: (props: {
     model: WiggleDisplayModel;
     orientation?: string;
     exportSVG?: boolean;
 }) => JSX.Element | null;
-declare const LinearWiggleDisplay: (props: {
+declare const _default: (props: {
     model: WiggleDisplayModel;
 }) => JSX.Element;
-export default LinearWiggleDisplay;
+export default _default;
 export { YScaleBar };

package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js CHANGED Viewed

@@ -9,7 +9,7 @@ const util_1 = require("@jbrowse/core/util");
 const configuration_1 = require("@jbrowse/core/configuration");
 const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
 const mobx_react_1 = require("mobx-react");
-const YScaleBar_1 = __importDefault(require("./YScaleBar"));
+const YScaleBar_1 = __importDefault(require("../../shared/YScaleBar"));
 exports.YScaleBar = YScaleBar_1.default;
 const trackLabelFontSize = 12.8;
 function getOffset(model) {
@@ -21,7 +21,7 @@ function getOffset(model) {
         ? (0, util_1.measureText)(trackName, trackLabelFontSize) + 100
         : 10;
 }
-const Wrapper = (0, mobx_react_1.observer)(({ children, model, exportSVG, }) => {
+const Wrapper = (0, mobx_react_1.observer)(function ({ children, model, exportSVG, }) {
     if (exportSVG) {
         return react_1.default.createElement(react_1.default.Fragment, null, children);
     }
@@ -53,7 +53,7 @@ const ScoreLegend = (0, mobx_react_1.observer)(({ model }) => {
         react_1.default.createElement(RectBg, { y: 0, x: xpos, width: len + 6, height: 16 }),
         react_1.default.createElement("text", { y: 13, x: xpos }, legend)));
 });
-const ColorLegend = (0, mobx_react_1.observer)(({ model, rowHeight, labelWidth, exportSVG, }) => {
+const ColorLegend = (0, mobx_react_1.observer)(function ({ model, rowHeight, labelWidth, exportSVG, }) {
     const { needsCustomLegend, needsScalebar, needsFullHeightScalebar, rowHeightTooSmallForScalebar, renderColorBoxes, sources, } = model;
     const svgFontSize = Math.min(rowHeight, 12);
     const canDisplayLabel = rowHeight > 11;
@@ -72,7 +72,7 @@ const ColorLegend = (0, mobx_react_1.observer)(({ model, rowHeight, labelWidth,
                 canDisplayLabel ? (react_1.default.createElement("text", { y: idx * rowHeight + 13, x: extraOffset + colorBoxWidth + 2, fontSize: svgFontSize }, source.name)) : null));
         }))) : null;
 });
-exports.StatBars = (0, mobx_react_1.observer)((props) => {
+exports.StatBars = (0, mobx_react_1.observer)(function (props) {
     const { model, orientation, exportSVG } = props;
     const { stats, needsCustomLegend, needsFullHeightScalebar, rowHeightTooSmallForScalebar, rowHeight, sources, ticks, } = model;
     const svgFontSize = Math.min(rowHeight, 12);
@@ -95,11 +95,10 @@ exports.StatBars = (0, mobx_react_1.observer)((props) => {
         rowHeightTooSmallForScalebar || needsCustomLegend ? (react_1.default.createElement(ScoreLegend, { ...props })) : (sources.map((_source, idx) => (react_1.default.createElement("g", { transform: `translate(0 ${rowHeight * idx})`, key: JSON.stringify(ticks) + '-' + idx },
             react_1.default.createElement(YScaleBar_1.default, { model: model, orientation: orientation })))))))));
 });
-const LinearWiggleDisplay = (0, mobx_react_1.observer)((props) => {
+exports.default = (0, mobx_react_1.observer)((props) => {
     const { model } = props;
     return (react_1.default.createElement("div", null,
         react_1.default.createElement(plugin_linear_genome_view_1.BaseLinearDisplayComponent, { ...props }),
         react_1.default.createElement(exports.StatBars, { model: model })));
 });
-exports.default = LinearWiggleDisplay;
 //# sourceMappingURL=WiggleDisplayComponent.js.map

package/dist/MultiLinearWiggleDisplay/components/WiggleDisplayComponent.js.map CHANGED Viewed

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package/dist/MultiLinearWiggleDisplay/models/configSchema.js CHANGED Viewed

@@ -102,6 +102,13 @@ function WiggleConfigFactory(pluginManager) {
             MultiLineRenderer: MultiLineRendererConfigSchema,
             MultiRowLineRenderer: MultiRowLineRendererConfigSchema,
         }),
+        /**
+         * #slot
+         */
+        height: {
+            type: 'number',
+            defaultValue: 200,
+        },
     }, {
         /**
          * #baseConfiguration

package/dist/MultiLinearWiggleDisplay/models/configSchema.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/MultiLinearWiggleDisplay/models/model.d.ts CHANGED Viewed

@@ -13,7 +13,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     type: import("mobx-state-tree").ISimpleType<string>;
     rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
 } & {
-    height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
+    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
         key: import("mobx-state-tree").ISimpleType<string>;
         region: import("mobx-state-tree").IModelType<{
@@ -69,7 +69,6 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
     minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    height: import("mobx-state-tree").IType<number | undefined, number, number>;
     color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -144,6 +143,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
     estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
 } & {
+    readonly height: any;
     readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
 } & {
@@ -173,7 +173,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
     setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
     clearRegionStats(): void;
-    setHeight(displayHeight: number): number;
+    setHeight(displayHeight: number): any;
     resizeHeight(distance: number): number;
     setScrollTop(scrollTop: number): void;
     updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
@@ -206,6 +206,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
 } & {
     renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
         overrideHeight: number;
+        theme: import("@mui/material").ThemeOptions;
     }): Promise<JSX.Element>;
 } & {
     message: string | undefined;
@@ -287,7 +288,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     };
     readonly autoscaleType: string;
     readonly displayCrossHatchesSetting: boolean;
-    readonly rowHeight: number;
+    readonly rowHeight: any;
     readonly rowHeightTooSmallForScalebar: boolean;
     readonly useMinimalTicks: any;
 } & {
@@ -303,7 +304,7 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     renderProps(): any;
     readonly hasResolution: boolean;
     readonly hasGlobalStats: boolean;
-    readonly fillSetting: 1 | 2 | 0;
+    readonly fillSetting: 2 | 0 | 1;
 } & {
     trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
         label: string;
@@ -328,12 +329,69 @@ declare const stateModelFactory: (pluginManager: PluginManager, configSchema: An
     afterAttach(): void;
     renderSvg(opts: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView").ExportSvgOptions & {
         overrideHeight: number;
+        theme: import("@mui/material").ThemeOptions;
     }): Promise<JSX.Element>;
-}, import("mobx-state-tree")._NotCustomized, {
+}, {
+    type: string;
+} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("mobx-state-tree").ISimpleType<string>;
+    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+} & {
+    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
+        key: import("mobx-state-tree").ISimpleType<string>;
+        region: import("mobx-state-tree").IModelType<{
+            refName: import("mobx-state-tree").ISimpleType<string>;
+            start: import("mobx-state-tree").ISimpleType<number>;
+            end: import("mobx-state-tree").ISimpleType<number>;
+            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
+        } & {
+            assemblyName: import("mobx-state-tree").ISimpleType<string>;
+        }, {
+            setRefName(newRefName: string): void;
+        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
+        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    }, {
+        renderInProgress: AbortController | undefined;
+        filled: boolean;
+        reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
+        features: Map<string, Feature> | undefined;
+        layout: any;
+        status: string;
+        error: unknown;
+        message: string | undefined;
+        maxHeightReached: boolean;
+        ReactComponent: ({ model, }: {
+            model: any;
+        }) => any;
+        renderProps: any;
+    } & {
+        doReload(): void;
+        afterAttach(): void;
+        setStatus(message: string): void;
+        setLoading(abortController: AbortController): void;
+        setMessage(messageText: string): void;
+        setRendered(props: {
+            reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
+            features: Map<string, Feature>;
+            layout: any;
+            maxHeightReached: boolean;
+            renderProps: any;
+        } | undefined): void;
+        setError(error: unknown): void;
+        reload(): void;
+        beforeDestroy(): void;
+    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
+}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
     type: string;
-    height: number;
     id: string;
     rpcDriverName: string | undefined;
+    heightPreConfig: number | undefined;
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 } & import("mobx-state-tree")._NotCustomized>;

package/dist/MultiLinearWiggleDisplay/models/model.js CHANGED Viewed

@@ -61,7 +61,6 @@ const stateModelFactory = (pluginManager, configSchema) => mobx_state_tree_1.typ
     resolution: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.number, 1),
     fill: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.boolean),
     minSize: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
-    height: 200,
     color: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
     posColor: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
     negColor: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),